CATH Superfamily 3.30.160.20

Browse Functional Families

ID	Function Family (FunFam) Name	Total Sequences	Structure?	Structural Representative	PDB Sites?	Alignment Diversity (0-100)
1	30S ribosomal protein S5	3828	3D	1pkpA01	-	92.3
2	40S ribosomal protein S2	1564	3D	6faiC01	-	91.8
3	Ribonuclease 3	1180	3D	4m30B02	-	99.2
4	Peptide chain release factor 1	1168	3D	2ihr103	-	95.7
5	Putative double-stranded RNA-specific adenosine deaminase	802	3D	2mdrA00	-	98.7
6	interleukin enhancer-binding factor 3 isoform X2	640	3D	3p1xB00	-	71.0
7	Double-stranded RNA-binding protein Staufen homolog 1	561	3D	1stuA00	-	96.7
8	interleukin enhancer-binding factor 3 isoform X2	552	3D	2dmyA00	-	76.7
9	Adenosine deaminase RNA-specific B2 inactive	549	3D	2l3jA01	-	85.5
10	Peptide chain release factor 2	448	3D	1gqeA03	-	87.0
11	double-stranded RNA-specific editase 1 isoform X1	430	3D	2l2kB00	-	79.2
12	Drosha ribonuclease III	356	3D	2na2A00	-	91.4
13	double-stranded RNA-binding protein Staufen homolog 2 isoform X3	336		-	-	87.2
14	double-stranded RNA-binding protein Staufen homolog 1 isoform X1	330	3D	4dkkA02	-	61.4
15	endoribonuclease Dicer	281	3D	3c4tA02	-	75.6
16	ATP-dependent RNA helicase DHX30 isoform X1	279		-	-	73.4
18	RISC-loading complex subunit TARBP2 isoform X3	262	3D	3adlA01	-	79.5
17	ATP-dependent RNA helicase DHX30 isoform X1	260	3D	2db2A01	-	95.9
19	RISC-loading complex subunit TARBP2	257	3D	4wyqE00	-	83.5
20	Peptide chain release factor 1	253	3D	2b3tB03	-	84.3
21	Microprocessor complex subunit DGCR8	244	3D	2yt4A03	-	96.7
22	28S ribosomal protein S5, mitochondrial	202		-	-	99.0
23	DGCR8, microprocessor complex subunit	192	3D	2yt4A02	-	28.9
24	double-stranded RNA-binding protein Staufen homolog 1 isoform X1	182	3D	6htuC00	-	69.9
25	APOBEC1 complementation factor isoform X1	174		-	-	76.9
26	ATP-dependent RNA helicase A	158	3D	3vyyB00	-	96.9
27	Peptide chain release factor 1	154	3D	1zbtA03	-	84.3
28	ATP-dependent RNA helicase A	147	3D	3vyxA00	-	99.7
29	Peptidyl-tRNA hydrolase YaeJ	130	3D	2rtxA00	-	80.8
30	NFKB repressing factor	124		-	-	72.7
32	endoribonuclease Dicer homolog 1	118	3D	2lrsA00	-	59.5
31	Endoribonuclease Dicer-like protein 1	118		-	-	47.8
33	Adenosine deaminase domain-containing 1 testis-specific	103		-	-	74.8
34	NFKB repressing factor	94		-	-	71.5
36	Double-stranded RNA-binding protein 2	92	3D	2n3hA00	-	86.2
35	RNA polymerase II C-terminal domain phosphatase-like 2	91		-	-	93.9
37	39S ribosomal protein L44, mitochondrial	89		-	-	94.8
41	tRNA-dihydrouridine 20 P	88	3D	6ei8A00	-	40.8
38	Dicer-like 104	88		-	-	86.9
39	30S ribosomal protein S5	82		-	-	73.3
40	Peptide chain release factor 2	81		-	-	69.4
42	SON DNA binding protein	80		-	-	47.5
43	60S ribosomal protein L3	79		-	-	75.1
44	Uncharacterized protein, isoform I	71	3D	2ljhA01	-	73.4
45	Eukaryotic translation initiation factor 2-alpha kinase 2	62	3D	1x49A01	-	94.1
48	Double-stranded RNA-binding protein 1	56	3D	2l2mA00	-	53.6
46	Peptidyl-tRNA hydrolase ICT1	56		-	-	92.7
47	double-stranded RNA-binding protein 1	56		-	-	78.1
49	Uncharacterized protein, isoform I	55		-	-	71.8
50	Peptidyl-tRNA hydrolase ICT1, mitochondrial	54		-	-	81.5
51	Microprocessor complex subunit DGCR8	52		-	-	72.3
52	Peptide chain release factor H	51		-	-	71.9
54	Chromosome 12 open reading frame 65	50	3D	2rsmA00	-	71.3
55	Ribosomal protein S24/S35	49		-	-	74.0
53	protein SON isoform X1	49		-	-	86.5
56	Adenosine deaminase domain-containing 2	48		-	-	90.9
58	Small RNA 2	46	3D	3htxD01	-	79.4
57	Double-stranded RNA-binding protein Staufen homolog 2	46		-	-	59.6
59	DExH-box ATP-dependent RNA helicase DExH3	43		-	-	80.4
61	Mitochondrial ribosomal protein S5,putative	42		-	-	11.2
60	DEA D/H	42		-	-	46.4
62	Eukaryotic translation initiation factor 2-alpha kinase 2	41	3D	1qu6A02	-	75.7
64	Uncharacterized protein, isoform A	40		-	-	57.7
63	Dicer-like 103	40		-	-	77.1
67	40S ribosomal protein S2	37	3D	6az1F01	-	73.1
65	Peptidyl-tRNA hydrolase domain protein	36		-	-	92.6
66	30S ribosomal protein S5	35		-	-	74.0
68	RNA polymerase II C-terminal domain phosphatase-like 1	32		-	-	37.5
70	Related to MRF1-peptide chain release factor, mitochondrial	29	3D	1rq0C03	-	84.9
69	Disco interacting protein isoform TO67	28		-	-	21.2
71	Double-stranded RNA-binding protein 4	25		-	-	91.7
72	Dicer-like 105	23		-	-	0.0
84	Ribonuclease 3	22	3D	4oogC02	-	52.7
73	Double-stranded RNA-binding protein Staufen homolog	21		-	-	64.2
74	RNA polymerase II C-terminal domain phosphatase-like 1	20		-	-	72.4
75	Os04g0529500 protein	19		-	-	0.0
76	Class I peptide chain release factor	18		-	-	49.1
77	Ribonuclease 3	17		-	-	6.0
78	Staufen, isoform C	16		-	-	14.9
80	30s ribosomal protein s5	16		-	-	61.9
79	Disco interacting protein isoform TO67	16		-	-	65.4
82	Uncharacterized protein	15		-	-	5.3
81	Ribonuclease 3	15		-	-	25.1
83	Ribonuclease 3	15		-	-	79.2
133	40S ribosomal protein S2	15	3D	6g5iC01	-	35.8
85	Peptidyl-tRNA hydrolase ICT1, putative	14		-	-	9.4
86	double-stranded RNA-binding protein Staufen homolog 1 isoform X2	14		-	-	27.0
93	Mrpl3p	14		-	-	23.7
89	Dicer-2	13		-	-	72.3
91	Peptide chain release factor 2	13		-	-	0.0
92	Related to MRPL3-Mitochondrial ribosomal protein, large subunit	13		-	-	74.3
90	ATP-dependent RNA helicase A isoform X2	13		-	-	5.0
87	Staufen, isoform C	13		-	-	17.2
88	Uncharacterized protein ZK632.2	13		-	-	88.7
96	Os01g0887400 protein	12		-	-	10.2
94	ATP-dependent RNA helicase A, putative	12		-	-	64.9
95	Uncharacterized protein	12		-	-	15.2
101	Loquacious, isoform B	11		-	-	4.4
99	Unplaced genomic scaffold supercont1.38, whole genome shotgun sequence	11		-	-	11.2
98	30S small subunit ribosomal protein S5	11		-	-	8.5
100	Probable peptide chain release factor 1, mitochondrial	11		-	-	15.7
97	Endoribonuclease dcr-1	11		-	-	39.5
105	YOL114C-like protein	10		-	-	0.8
120	RISC-loading complex subunit TARBP2	10	3D	5npgA00	-	52.2
106	R2D2	10		-	-	25.3
107	Peptide chain release factor 1, putative	10		-	-	7.1
102	DExH-box ATP-dependent RNA helicase DExH7 chloroplastic	10		-	-	1.9
104	GD20369	10		-	-	77.6
103	Ribonuclease 3	10		-	-	1.6
112	Ribonuclease 3-like protein 3	8		-	-	75.4
108	Double-stranded RNA-binding protein	8		-	-	15.2
111	Peptide chain release factor 1	8		-	-	11.3
109	Eukaryotic translation initiation factor 2-alpha kinase 2	8		-	-	7.2
110	30S ribosomal protein S5	8		-	-	1.7
116	Mitochondrial ribosomal protein L44	7		-	-	46.7
117	Related to Ribonuclease III	7		-	-	81.6
113	Dicer-like 4	7		-	-	69.6
119	R2D2	7		-	-	8.1
115	Peptide chain release factor 1	7		-	-	17.0
118	Uncharacterized protein	7		-	-	14.1
114	Uncharacterized protein	7		-	-	7.9
127	Putative trna-specific adenosine deaminase 1	6		-	-	46.4
124	Adenosine deaminase acting on RNA Adar	6		-	-	1.5
121	Glycosyl hydrolase family protein	6		-	-	2.6
122	Glycosyl hydrolase family protein	6		-	-	0.0
125	Peptide chain release factor 2, putative	6		-	-	4.4
126	RF-1 domain-domain-containing protein	6		-	-	84.5
123	Glycosyl hydrolase family protein	6		-	-	12.1
128	RNA HelicAse	5		-	-	15.8
132	Peptide chain release factor H	5		-	-	4.2
129	Uncharacterized protein	5		-	-	53.7
131	GM23818	5		-	-	13.4
130	Endoribonuclease Dicer-like 2 isoform B	5		-	-	9.5
134	Predicted protein	5		-	-	75.3
136	Staufen 1	4		-	-	3.8
137	Putative RNase III	4		-	-	73.6
142	Tapas, isoform B	4		-	-	0.0
147	Predicted protein	4		-	-	59.0
139	Interferon-induced, double-stranded RNA-activated protein kinase	4		-	-	31.2
135	Double-stranded RNA-specific editase Adar-like Protein	4		-	-	40.9
145	Class I peptide chain release factor	4		-	-	15.1
141	Double-stranded RNA-binding domain DsRBD	4		-	-	7.0
146	Uncharacterized protein	4		-	-	5.2
144	Protein CBG12024	4		-	-	16.6
138	Probable RNA-binding protein 46	4		-	-	26.3
140	Eukaryotic translation initiation factor 2-alpha kinase 2	4		-	-	0.0
143	Eukaryotic translation initiation factor 2-alpha kinase 2	4		-	-	4.2
153	Eukaryotic translation initiation factor 2-alpha kinase 2	3		-	-	3.3
155	Os04g0529500 protein	3		-	-	0.0
154	Predicted protein	3		-	-	9.8
158	Predicted protein	3		-	-	17.8
149	Double stranded RNA-binding protein	3		-	-	0.0
152	Dicer-like 4	3		-	-	7.5
161	Ribonuclease 3	3		-	-	41.9
148	Similar to NF-kappa-B-repressing factor NFkB-repressing factor Transcription factor NRF ITBA4 protein	3		-	-	27.9
157	Plastid ribosomal protein S5	3		-	-	14.1
160	Double-stranded RNA-specific adenosine deaminase adr-2	3		-	-	34.7
151	Endoribonuclease Dicer homolog 2	3		-	-	0.0
156	APOBEC1 complementation factor isoform X1	3		-	-	0.0
150	Eukaryotic translation initiation factor 2-alpha kinase 2	3		-	-	1.6
159	Ribonuclease 3	3		-	-	11.0
180	Predicted protein	2		-	-	0.0
191	Uncharacterized protein	2		-	-	34.5
187	Cdl1p	2		-	-	0.0
170	Uncharacterized protein	2		-	-	0.0
207	Uncharacterized protein	2		-	-	48.7
175	Uncharacterized protein	2		-	-	0.0
198	Uncharacterized protein	2		-	-	18.3
202	Peptide chain release factor PrfB3, chloroplastic	2		-	-	0.0
184	39S ribosomal protein L44, mitochondrial	2		-	-	0.0
181	Uncharacterized protein	2		-	-	0.0
165	Uncharacterized protein	2		-	-	22.5
209	Uncharacterized protein	2		-	-	19.9
168	Ribonuclease III	2		-	-	4.5
178	Uncharacterized protein	2		-	-	0.0
200	Blanks	2		-	-	1.8
224	Uncharacterized protein	2	3D	3rv0B03	-	0.0
192	Uncharacterized protein	2		-	-	21.2
199	Uncharacterized protein	2		-	-	34.9
195	Uncharacterized protein	2		-	-	11.1
174	Predicted protein	2		-	-	0.0
188	Ribonuclease 3 1	2		-	-	0.0
183	Uncharacterized protein	2		-	-	0.0
203	STAUfen DsRNA binding protein	2		-	-	40.9
204	STAUfen DsRNA binding protein	2		-	-	40.5
179	Ribonuclease III	2		-	-	0.0
164	Nkrf protein, putative	2		-	-	49.0
193	Adenosine deaminase domain containing 1	2		-	-	10.9
189	Uncharacterized protein	2		-	-	8.6
177	Endoribonuclease Dicer	2		-	-	4.0
205	Uncharacterized protein	2		-	-	45.6
182	Ribosomal protein S5, C-terminal domain-domain-containing protein	2		-	-	0.0
167	Uncharacterized protein	2		-	-	1.5
163	Uncharacterized protein	2		-	-	43.0
186	39S ribosomal protein L44, mitochondrial	2		-	-	0.0
173	Eukaryotic translation initiation factor 2 alpha kinase 2	2		-	-	0.0
196	Uncharacterized protein	2		-	-	5.6
206	Eukaryotic translation initiation factor 2 alpha kinase 2	2		-	-	46.7
194	Uncharacterized protein	2		-	-	0.0
244	RNA interference promoting factor	2	3D	2ltrA00	-	0.0
171	Endoribonuclease Dicer-like 2	2		-	-	0.0
197	Class I peptide chain release factor	2		-	-	10.2
176	Putative endoribonuclease dicer	2		-	-	0.0
208	A-to-I RNA editing regulator adr-1	2		-	-	44.2
162	Double-stranded RNA-binding protein Staufen homolog 2	2		-	-	0.0
201	R3D1	2		-	-	0.0
169	Uncharacterized protein	2		-	-	0.0
190	Ribonuclease III domain-containing protein	2		-	-	0.0
172	Uncharacterized protein	2		-	-	0.0
166	Uncharacterized protein	2		-	-	0.0
185	Uncharacterized protein	2		-	-	0.0
246	RNA interference promoting factor	1		-	-	0.0
212	Double-stranded RNA-specific editase Adar-like Protein	1		-	-	0.0
232	Predicted protein	1		-	-	0.0
225	Double-stranded RNA-activated protein kinase 2	1		-	-	0.0
229	Predicted protein	1		-	-	0.0
222	Uncharacterized protein	1		-	-	0.0
217	Uncharacterized protein	1		-	-	0.0
247	A-to-I RNA editing regulator adr-1	1		-	-	0.0
210	Double-stranded RNA-binding protein Staufen homolog	1		-	-	0.0
252	Adenosine deaminase, RNA specific B2 inactive	1		-	-	0.0
242	Mitochondrial translation release factor 1	1		-	-	0.0
254	Interleukin enhancer-binding factor 3a	1		-	-	0.0
213	Double-stranded RNA-specific editase Adar-like Protein	1		-	-	0.0
233	Uncharacterized protein	1		-	-	0.0
243	Predicted protein	1		-	-	0.0
228	Uncharacterized protein	1		-	-	0.0
238	Spliced leader RNA PSE-promoter transcription factor, putative	1		-	-	0.0
253	Uncharacterized protein	1		-	-	0.0
248	Double-stranded RNA-specific editase Adar-like Protein	1		-	-	0.0
211	Predicted protein	1		-	-	0.0
236	Uncharacterized protein	1		-	-	0.0
218	Uncharacterized protein	1		-	-	0.0
234	Uncharacterized protein	1		-	-	0.0
221	HEN1 protein	1		-	-	0.0
227	Uncharacterized protein	1		-	-	0.0
255	Predicted protein	1		-	-	0.0
250	Predicted protein	1		-	-	0.0
249	Uncharacterized protein	1		-	-	0.0
240	Uncharacterized protein	1		-	-	0.0
230	Double-strand-specific pac1 ribonuclease	1		-	-	0.0
214	Uncharacterized protein	1		-	-	0.0
239	Uncharacterized protein	1		-	-	0.0
219	Uncharacterized protein	1		-	-	0.0
220	Predicted protein	1		-	-	0.0
226	Predicted protein	1		-	-	0.0
237	Ribosomal protein S2	1		-	-	0.0
235	Uncharacterized protein	1		-	-	0.0
251	RISC-loading complex subunit TARBP2	1		-	-	0.0
215	Uncharacterized protein	1		-	-	0.0
245	Double-stranded RNA-specific editase B2, putative	1		-	-	0.0
241	Uncharacterized protein	1		-	-	0.0
231	Predicted protein	1		-	-	0.0
223	Uncharacterized protein	1		-	-	0.0
216	Uncharacterized protein	1		-	-	0.0