CATH Superfamily 1.10.10.10

Browse Functional Families

ID	Function Family (FunFam) Name	Total Sequences	Enzyme?	Structure?	Structural Representative	PDB Sites?	Alignment Diversity (0-100)
264130	DNA-binding transcriptional dual regulator Crp	99973		3D	1cgpA02	-	75.2
262961	Aerobic respiration control protein arcA	77640	EC		-	-	87.0
265914	Transcriptional regulator, AsnC family	73785	EC	3D	2gqqA01	-	98.9
266694	Transcriptional repressor, LexA family	69489	EC	3D	1jhfA02	-	88.7
265980	Transcriptional regulator, GntR family	62001	EC	3D	5kvrA00	-	87.5
263984	Fatty acid metabolism regulator	58843		3D	1e2xA01	-	71.9
265937	DNA-binding transcriptional regulator AsnC	57463		3D	2cg4A01	-	97.4
263276	Phosphate regulon response regulator PhoB	57111		3D	1gxpA00	-	84.2
64882	Capsular synthesis regulator component B	56967		3D	1p4wA00	-	50.2
265378	DNA-binding transcriptional repressor DgsA	56553	EC	3D	1z6rA01	-	89.9
266333	Arginine biosynthesis repressor	52687		3D	1aoyA00	-	97.1
5261	Transcriptional repressor mprA	47943			-	-	38.1
67127	Nitrate/nitrite response regulator protein	46952	EC	3D	1a04A02	-	38.1
265134	LysR family transcriptional regulator	46136	EC		-	-	95.2
224575	HTH-type transcriptional regulator UlaR	45669			-	-	54.1
60909	Mn-dependent transcriptional regulator MntR	43400		3D	2h09A01	-	15.5
263997	CysB family transcriptional regulator	42481	EC		-	-	88.7
265941	Fumarate/nitrate reduction transcriptional regulator	40904		3D	5cvrA02	-	98.7
57640	Positive transcription regulator evgA	40001			-	-	0.0
264943	RNA polymerase sigma factor	39028			-	-	90.6
266375	RNA polymerase sigma factor	38495			-	-	98.2
266206	ArsR family transcriptional regulator	37627	EC	3D	3cuoA00	-	98.5
35661	DNA-binding transcriptional regulator PhoP	36432			-	-	61.6
180360	Galactonate operon transcriptional repressor	35771			-	-	64.5
263187	Transcriptional regulatory protein CusR	35232	EC		-	-	70.6
264738	Chromosome initiation inhibitor	34580			-	-	66.8
264946	DNA-binding transcriptional repressor GlpR	33785			-	-	80.6
263751	DNA-binding transcriptional regulator OxyR	32467			-	-	61.4
263707	Chromosome partition protein MukF	31442		3D	1t98A01	-	79.3
265560	LysR family transcriptional regulator	31238			-	-	82.1
264797	Two component system response regulator	30116		3D	4uhtA00	-	81.1
266146	DNA-binding transcriptional regulator ModE	29543	EC	3D	1b9mA01	-	96.9
262761	HTH-type transcriptional repressor NsrR	29003			-	-	81.0
266816	HxlR family transcriptional regulator	28732	EC	3D	5hs7A00	-	96.5
266094	RNA polymerase sigma factor	28650	EC		-	-	94.3
252082	Predicted DNA-binding transcriptional regulator	28378			-	-	73.4
129166	GntR family transcriptional regulator	28261			-	-	45.7
147599	Transcriptional regulator	28159		3D	1fseA00	-	33.9
139582	GntR family transcriptional regulator	26485			-	-	50.3
107710	Transcriptional regulator, LysR family protein	25300			-	-	56.9
266362	Methylated-DNA--protein-cysteine methyltransferase family protein	24746	EC	3D	1eh6A02	-	94.5
265482	HTH-type transcriptional regulator TdcA	24570			-	-	77.6
200456	DeoR C terminal sensor domain protein	24339			-	-	8.2
266895	Ferrous iron transport protein C	23250		3D	1xn7A00	-	96.9
235226	Transcriptional regulator gadE	23109			-	-	1.9
89916	Putative DNA-binding transcriptional regulator	22611			-	-	59.0
265970	Transcriptional regulator, LuxR family	22177	EC	3D	3klnA02	-	83.6
265926	Zinc uptake transcriptional repressor	21712	EC	3D	4mtdA01	-	93.2
265953	Regulatory protein RecX	21636		3D	3c1dA03	-	91.7
266005	Regulatory protein RecX	21550		3D	3c1dA01	-	94.8
266451	Regulatory protein RecX	21171		3D	3dfgA02	-	100.0
33623	Transcriptional regulator, RpiR family protein	21034	EC		-	-	4.4
265703	Transcriptional regulator, DeoR family	20966	EC		-	-	94.8
266125	Transcriptional regulator SlyA	19881		3D	3deuA00	-	93.0
224586	DeoR family transcriptional regulator	19576			-	-	68.4
264242	GTP-sensing transcriptional pleiotropic repressor CodY	18128		3D	2b0lA00	-	80.5
142187	Repressor of aceBA operon	18118			-	-	63.1
265323	DNA-binding transcriptional repressor ExuR	18101			-	-	90.4
53963	DNA-binding transcriptional regulator BaeR	15530		3D	4b09A02	-	43.0
253214	DeoR-like helix-turn-helix domain protein	15389			-	-	10.7
265395	FUR family transcriptional regulator	15345	EC	3D	2fe3A01	-	92.1
263236	DNA-binding transcriptional repressor AllR	14813			-	-	35.4
227786	Glucitol operon repressor	14496			-	-	23.9
163145	DNA-binding transcriptional regulator KdgR	14280			-	-	91.1
264747	ATP-dependent DNA helicase RuvB	13855	EC		-	-	97.4
106291	DNA-binding transcriptional regulator CsiR	13826			-	-	30.2
264429	Ferric uptake regulation protein	13615			-	-	81.6
265173	Arginine repressor	13224		3D	1f9nA01	-	90.8
28110	Helix-turn-helix domain, rpiR family protein	13050			-	-	30.9
35257	Transcriptional regulatory protein pcoR	13016		3D	2jzyA00	-	9.4
265814	FUR family transcriptional regulator	12545			-	-	98.2
265510	RNA polymerase sigma factor	12357			-	-	11.2
265211	Two-component response regulator OmpR	11756	EC	3D	1oddA00	-	95.8
19178	Putative transcriptional regulator	11666			-	-	3.6
190313	Bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor	11523	EC	3D	1biaA01	-	73.2
135846	Phosphonate metabolism transcriptional regulator PhnF	11330			-	-	46.1
265905	RNA polymerase sigma factor	10633		3D	4jk1X03	-	89.6
266731	Redox-sensing transcriptional repressor Rex	10421		3D	2dt5A01	-	99.7
262931	PhoP family transcriptional regulator	10261	EC	3D	2d1vA00	-	83.1
264814	Ferric uptake regulator Fur	10153	EC	3D	2fu4A00	-	92.7
264361	HTH-type transcriptional regulator IscR	10052	EC	3D	4hf0A00	-	92.9
164057	Transcriptional regulator, GntR family	10009			-	-	24.6
264792	RNA polymerase sigma factor	9967		3D	4jk1X04	-	83.5
264888	Capsule biosynthesis protein CapA	9945			-	-	70.5
61180	DeoR family transcriptional regulator	9745	EC		-	-	73.1
264994	Forkhead box protein L1	9699	EC	3D	1d5vA00	-	92.9
148959	DNA-binding transcriptional repressor LldR	9234			-	-	18.5
262754	ATP-dependent DNA helicase RecQ	8944	EC	3D	1oywA03	-	82.8
102923	Putative DNA-binding transcriptional regulator	8837			-	-	2.5
80325	Transcriptional regulator, LysR family	8797			-	-	16.7
266001	Heat-inducible transcription repressor HrcA	8783		3D	1stzA01	-	91.5
153453	Ethanolamine utilization protein EutK	8364		3D	3i71A00	-	51.9
266193	ArsR family transcriptional regulator	8327	EC		-	-	95.9
128147	Marine sediment metagenome DNA, contig: S03H2_C02027	7768			-	-	18.0
94016	LysR family transcriptional regulator	7726			-	-	30.1
265275	Transcriptional regulator, GntR family	7719	EC	3D	2wv0A01	-	88.6
266457	RNA polymerase sigma factor	7646	EC	3D	1or7A02	-	98.3
206858	Galactitol utilization operon repressor	7575			-	-	24.1
262767	HTH-type transcriptional regulator Hpr	7557		3D	2fxaA00	-	80.2
266808	Putative transcription factor FapR	7143	EC		-	-	98.5
264804	Transcriptional regulator, MarR family	6258	EC	3D	1z91A00	-	93.1
265148	Heat shock transcription factor	6258	EC	3D	2lduA01	-	80.5
262835	Two component response regulator	6241			-	-	70.2
263335	Transcriptional activator protein NhaR	6200			-	-	89.5
44234	DNA-binding transcriptional repressor	5955	EC		-	-	28.8
131945	GntR family transcriptional regulator	5884			-	-	54.2
62185	LysR family transcriptional regulator	5699			-	-	37.6
90725	Transcriptional activator protein metR	5625		3D	5fo5A00	-	27.7
74549	DNA-binding transcriptional regulator LysR	5535			-	-	71.0
262710	DNA-binding transcriptional repressor MarR	5475		3D	1jgsA00	-	49.0
266242	Transcriptional regulator, LysR family	5060	EC		-	-	97.5
263259	Transcriptional regulator LysR family	4845			-	-	58.2
266227	GntR family transcriptional regulator	4733	EC	3D	3bwgA01	-	97.2
266483	LuxR family transcriptional regulator	4555	EC	3D	4lfuA02	-	100.0
266246	Arginine repressor	4341	EC	3D	3ereD01	-	97.3
246040	Cyclic di-GMP phosphodiesterase yahA	4309			-	-	31.2
107051	Manganese transport regulator MntR	4275			-	-	46.6
266417	O-methyltransferase family protein, expressed	4231	EC	3D	4a6dA01	-	95.9
265103	Holliday junction DNA helicase RuvB	4175	EC		-	-	91.6
263591	Transcriptional regulator NanR	4150			-	-	39.5
264770	Holliday junction DNA helicase RuvB	4066	EC		-	-	90.6
266334	HTH-type transcriptional regulator cbl	4066	EC		-	-	99.7
266671	PadR family transcriptional regulator	4013			-	-	88.9
223664	LuxR family transcriptional regulator	4007			-	-	24.0
85169	LysR family transcriptional regulator	3919			-	-	37.5
265224	Segregation and condensation protein B	3899		3D	4i98B01	-	96.7
264144	ETS translocation variant 1	3743	EC	3D	1k78B00	-	88.4
265005	Segregation and condensation protein B	3697		3D	3w6jB02	-	97.3
266800	Helix-turn-helix transcriptional regulator, putative	3683			-	-	93.4
72408	LysR family transcriptional regulator	3666			-	-	61.3
266614	Paired box transcription factor	3666	EC	3D	2k27A02	-	88.9
80751	Response regulator receiver domain protein	3636			-	-	28.8
266761	Methionine aminopeptidase 2, putative, expressed	3553	EC	3D	1b59A02	-	86.5
265036	Paired box transcription factor	3412	EC	3D	2k27A01	-	91.3
266413	Eukaryotic initiation factor	3320	EC	3D	4d0pA02	-	90.3
266071	Transcriptional regulator, AsnC family	3312		3D	2ivmA01	-	99.5
75726	Fimbriae Z protein	3251			-	-	13.3
262882	DNA-binding response regulator MtrA	3118		3D	2gwrA02	-	24.2
51107	Transcriptional regulator HilA	3105			-	-	3.8
264883	Pur operon repressor PurR	3086	EC	3D	1o57A01	-	87.8
264765	Putative two component response regulator	3084	EC	3D	3r0jA02	-	91.1
263682	Holliday junction ATP-dependent DNA helicase RuvB	3023	EC		-	-	38.2
266241	Penicillinase repressor BlaI	2956		3D	1sd4A01	-	93.2
265188	ATP-dependent DNA helicase RecQ	2847	EC	3D	4q47A03	-	94.8
218726	Putative transcriptional regulator	2795			-	-	55.3
263051	Stage 0 sporulation protein A	2763		3D	1lq1A00	-	91.6
107688	Ferric uptake regulation protein	2754			-	-	1.3
266056	Transcriptional regulator, LysR family	2723			-	-	99.7
266021	HTH-type transcriptional regulator MalT	2653			-	-	78.7
265171	DNA-binding transcriptional regulator QseB	2641	EC		-	-	96.8
266788	Putative rfx transcription factor	2587		3D	1dp7P00	-	68.1
265975	Probable disease resistance protein	2581	EC		-	-	99.2
107755	Crp/Fnr family transcriptional regulator	2559		3D	3d0sA02	-	28.5
264767	Holliday junction DNA helicase RuvB	2549	EC		-	-	92.3
28324	DNA-binding transcriptional regulator BasR	2479			-	-	29.9
153466	Segregation and condensation protein B	2401			-	-	0.0
265038	Cell division protein FtsK	2370	EC	3D	5dcfA02	-	97.9
265125	Holliday junction DNA helicase RuvB	2357	EC		-	-	96.4
266378	Regulatory protein RecX	2354		3D	3d5lA02	-	100.0
265032	LysR family transcriptional regulator	2328			-	-	94.3
265468	E2F family transcription factor	2327		3D	1cf7A00	-	81.4
266463	Regulatory protein RecX	2322			-	-	100.0
266988	ORC1-type DNA replication protein	2305	EC	3D	1fnnA03	-	91.3
262735	Transcriptional regulatory protein ChvI	2305			-	-	64.8
265414	Response regulator protein GraR	2299			-	-	68.6
264597	HTH-type transcriptional regulator yiaJ	2281	EC		-	-	56.6
263037	Response regulator ArlR	2280			-	-	62.7
264882	DNA-binding transcriptional regulator IlvY	2266			-	-	78.1
235268	Transcriptional regulator, DeoR family	2261			-	-	69.0
264933	Lactose phosphotransferase system repressor	2112			-	-	72.3
37970	Regulator of kdp operon	2111		3D	3zq7A00	-	59.8
266109	Bifunctional ligase/repressor BirA	2106	EC		-	-	95.3
266885	Transcriptional regulator LsrR	1987	EC	3D	4go1A01	-	94.6
266176	SARP family transcriptional regulator	1970	EC	3D	2fezA01	-	90.1
262919	Transcriptional regulatory protein ResD	1946			-	-	51.0
45416	Transcriptional regulatory protein CutR	1900			-	-	17.5
266879	Regulatory protein RecX	1890			-	-	96.9
264742	Interferon regulatory factor 1	1858		3D	1if1A00	-	91.5
264929	ATP-dependent DNA helicase RuvB	1698	EC	3D	3pfiA03	-	92.0
266823	RIO-type serine/threonine-protein kinase Rio2	1671	EC	3D	1tqiA01	-	91.3
264859	Cell division protein FtsK	1659			-	-	92.6
263668	Heme response regulator HssR	1629			-	-	77.4
264275	Iron dependent regulatory protein	1612		3D	1b1bA01	-	82.3
178714	Uncharacterized protein	1604			-	-	1.9
175362	HTH-type transcriptional regulator YidZ	1514			-	-	36.3
109142	Two-component response regulator TtrR	1508			-	-	49.2
102646	Transcriptional regulator, LysR family	1506	EC		-	-	17.0
82892	LysR family transcriptional regulator	1503			-	-	52.0
264011	SWI/SNF complex subunit SMARCC1	1491	EC	3D	2fq3A00	-	96.7
264022	Transcriptional regulator DtxR family	1464		3D	1on1A01	-	62.7
44402	TorCAD operon transcriptional regulatory protein torR	1451			-	-	9.0
7435	Homoprotocatechuate degradation operon regulator, HpaR	1448			-	-	8.8
266998	RepE family replication initiation protein	1405	EC	3D	1repC02	-	89.3
110594	2-aminoethylphosphonate uptake and metabolism regulator	1393			-	-	54.6
266501	Topoisomerase 6 subunit A	1393	EC	3D	2q2eA01	-	96.4
266399	Vacuolar sorting protein SNF8	1392	EC	3D	2zmeA02	-	96.9
37151	Sensory transduction protein regX3	1391		3D	2oqrA03	-	58.3
2024	RepE family replication initiation protein	1391	EC	3D	1repC01	-	63.4
263913	Segregation and condensation protein B	1266		3D	4i98B02	-	56.3
236712	Transposase for IS431mec	1260			-	-	78.4
266798	RecX family transcriptional regulator	1253			-	-	98.3
263919	Forkhead box P1 protein	1250		3D	3qrfF00	-	94.5
263739	Segregation and condensation protein B	1225			-	-	68.5
265960	Histone H1 linker	1214			-	-	85.0
6716	HTH-type transcriptional regulator MgrA	1203		3D	2bv6A00	-	10.1
265350	DNA-binding transcriptional regulator DsdC	1181			-	-	90.1
266256	RecX family transcriptional regulator	1177			-	-	72.6
265701	Bkd operon transcriptional regulator	1142			-	-	77.5
33162	Transcriptional regulatory protein RprY	1128			-	-	47.8
18646	Staphylococcal accessory regulator A	1123		3D	1fzpB00	-	36.2
266794	Response regulator receiver/ANTAR domain-containing protein	1106		3D	1s8nA02	-	97.9
264185	Arginine repressor, ArgR	1100			-	-	43.1
263062	Response regulator SaeR	1080		3D	4qwqA00	-	24.8
264806	Segregation and condensation protein B	1074			-	-	57.8
189214	LuxR family transcriptional regulator	1073			-	-	34.0
265916	Eukaryotic initiation factor 3E subunit	1052			-	-	98.0
153459	RNA polymerase sigma factor	1031			-	-	48.8
266396	Regulatory protein RecX	1031		3D	3dfgA01	-	100.0
118469	LysR family transcriptional regulator	991			-	-	2.8
264734	Transcription factor Dp-2, putative	990		3D	1cf7B00	-	86.9
265444	Cadmium efflux system accessory protein	967		3D	1u2wA00	-	98.2
222225	DeoR family transcriptional regulator	965			-	-	0.0
266113	RNA polymerase sigma factor	942			-	-	96.1
41000	Phosphate regulon transcriptional regulatory protein PhoB	926			-	-	20.9
21464	Staphylococcal accessory regulator R	912		3D	1hsjB03	-	29.2
264789	Forkhead box subgroup O	912		3D	3co6C00	-	93.0
264473	Regulatory protein RecX	906			-	-	48.1
193562	Arginine repressor	902			-	-	1.9
266128	Histone cluster 1, H1t	897		3D	1ghcA00	-	94.5
262894	Transcriptional regulatory protein GlnR	881	EC		-	-	65.1
89936	Putative transcriptional regulator	860			-	-	39.1
181961	Pca operon regulatory protein	859			-	-	57.0
194298	Putative frv operon regulatory protein	858			-	-	51.8
263163	HTH-type transcriptional regulator MurR	857			-	-	34.2
29167	DNA-binding response regulator CiaR	843			-	-	50.1
75425	Transcriptional antiterminator	842			-	-	0.0
263989	Segment polarity protein dishevelled	838		3D	3ml6A01	-	90.2
266619	Selenocysteine-specific translation elongation factor	822	EC	3D	2pjpA02	-	93.4
264350	RNA polymerase sigma factor	819			-	-	57.4
264139	Cullin-3 CUL-3	811		3D	1iuyA00	-	77.6
264172	Segregation and condensation protein B	810			-	-	43.4
262830	DNA-binding transcriptional regulator HexR	790	EC		-	-	31.6
265107	La-related protein 1	788			-	-	84.7
262864	ETS-related transcription factor Elf-2	785			-	-	80.8
31598	Transcriptional regulatory , C terminal family protein	755			-	-	11.0
94131	Transcriptional regulator, LysR family	745			-	-	14.6
266377	Regulatory protein RecX	738			-	-	90.8
264758	Holliday junction ATP-dependent DNA helicase RuvB	733	EC		-	-	94.7
264835	La ribonucleoprotein domain family, member 4	728		3D	2cqkA00	-	97.8
114345	HTH-type transcriptional regulator CynR	718			-	-	4.3
266283	Lysine-specific histone demethylase 1	717	EC	3D	2comA00	-	94.7
74142	Hca operon transcriptional activator	707			-	-	29.8
266240	Vacuolar-sorting protein SNF8	698		3D	2zmeA03	-	100.0
227792	Putative DEOR-type transcriptional regulator	694			-	-	44.4
140450	Transcriptional regulator, LuxR family	685			-	-	11.9
250601	Putative transcriptional regulator SgcR	678			-	-	3.9
75565	Xanthosine operon regulatory protein	677			-	-	1.4
267046	Putative NUDIX superfamily hydrolase	674	EC		-	-	86.1
264326	HTH-type transcriptional regulator SgrR	665			-	-	91.4
264775	DNA translocase FtsK	658	EC		-	-	78.1
60806	HTH-type transcriptional regulator McbR	645		3D	4p9fA01	-	29.8
266469	Putative recombination regulator RecX	644			-	-	97.3
189108	Methicillin resistance regulatory protein	638		3D	1okrA01	-	4.5
33037	Two-component system transcriptional regulator PrrA	632		3D	1ys6A02	-	24.1
266051	Arginine repressor	613			-	-	92.4
266245	26S proteasome regulatory subunit	610	EC		-	-	100.0
265933	RNA polymerase III subunit C34	604	EC	3D	2dk5A01	-	94.2
39588	Fis family transcriptional regulator	603			-	-	39.1
266721	DDRGK domain-containing protein 1	571	EC	3D	1wi9A01	-	84.1
51115	Transcriptional activator protein IrlR	570			-	-	21.9
264885	COP9 signalosome complex subunit 3	569			-	-	79.4
189135	Selenocysteine-specific translation elongation factor	555	EC		-	-	29.7
265582	Eukaryotic translation initiation factor 3 subunit K	554			-	-	95.6
221479	Selenocysteine-specific translation elongation factor	545	EC	3D	2pjpA01	-	23.0
262849	ETS translocation variant 3	544			-	-	69.6
265372	Vacuolar membrane-associated protein IML1	543			-	-	91.4
202188	DNA translocase FtsK	541			-	-	34.3
153361	Holliday junction ATP-dependent DNA helicase RuvB	540	EC		-	-	16.7
264025	Forkhead box protein N3	516			-	-	83.7
264138	Ubiquitin-protein ligase, cullin 4	504		3D	2do7A01	-	67.0
266644	Beta-lactamase-like protein 2	499		3D	4ad9A02	-	98.8
75654	Two-component system response regulator VanRB	488			-	-	3.9
231518	Transcriptional regulator, AsnC family	488			-	-	78.9
264402	ETS-related transcription factor Elf-5	487		3D	1yo5C00	-	85.3
265143	Histone H1	479		3D	1uhmA00	-	91.7
165261	Terminase small subunit domain protein	476		3D	1j9iA00	-	27.7
148828	Pca regulon regulatory protein PcaR	475	EC		-	-	33.5
264973	Transcriptional regulatory protein CseB	457			-	-	76.7
169030	CRP-like protein Clp	457		3D	3iwzA02	-	34.7
31996	Transcriptional regulator, ArsR family	457			-	-	46.3
265832	Eukaryotic translation initiation factor 3 subunit K	448		3D	1rz4A02	-	94.2
73422	RNA polymerase sigma-70 factor	447			-	-	28.8
262828	Developmental regulator flbA, variant	446			-	-	87.8
266925	Regulatory protein RecX	439			-	-	99.2
82771	Putative transcriptional regulator YhjC	439			-	-	16.8
265848	Vacuolar protein-sorting-associated protein 36	438		3D	2zmeB02	-	96.3
87126	RepFIB replication protein A	436			-	-	12.6
153291	ATP-dependent DNA helicase RuvB	433	EC		-	-	55.2
264212	DNA translocase FtsK	427			-	-	83.9
264207	Regulator of G-protein signaling 6	422			-	-	89.4
153258	Redox-sensing transcriptional repressor Rex	420			-	-	59.8
264856	HTH-type transcriptional regulator CatR	417		3D	3k1mA01	-	87.8
264870	RNA polymerase sigma factor	416		3D	1l0oC00	-	59.3
263741	Transcription factor E2F8	414			-	-	69.9
82776	Putative HTH-type transcriptional regulator ycaN	412	EC		-	-	4.1
264801	cDNA FLJ58509, highly similar to Cullin-1	411		3D	1ldjA07	-	88.9
76977	HTH-type transcriptional regulator CmtR	411			-	-	13.2
263097	Forkhead box protein N1	410			-	-	76.1
32281	DNA-binding response regulator MtrA	409			-	-	35.2
214900	Transcriptional regulator, DeoR family	400			-	-	0.0
144025	RNA polymerase factor sigma-70	400	EC		-	-	6.5
264559	RNA polymerase sigma factor	397			-	-	58.7
267000	Vacuolar protein-sorting-associated protein 36	390		3D	2zmeB03	-	93.1
266430	Segregation and condensation protein B	390			-	-	99.7
263040	DEP domain-containing protein 1A	390		3D	2ysrA00	-	93.4
266066	Global nitrogen regulator Ycf28	384		3D	3la2A02	-	92.2
263858	Spi-B transcription factor Spi-1/PU.1 related	379		3D	1pueE00	-	60.4
263965	Transcription factor E2F7	377			-	-	67.1
262918	ETS-related transcription factor Elf-3	376		3D	3jtgA01	-	84.4
11319	Uncharacterized protein	376			-	-	52.3
148478	Possible transcriptional regulatory protein	374			-	-	36.7
37976	Transcriptional activator CadC	370			-	-	14.4
41268	Response regulator receiver domain protein	363			-	-	15.4
266085	cDNA FLJ58509, highly similar to Cullin-1	357		3D	1ldjA06	-	88.4
98227	GntR family transcriptional regulator	346			-	-	31.1
156217	GntR family transcriptional regulator	344			-	-	42.7
9201	MarR family transcriptional regulator	344			-	-	35.7
140180	GntR family transcriptional regulator	339			-	-	15.0
264753	Segregation and condensation protein B	335			-	-	39.5
263254	Segregation and condensation protein B	335			-	-	18.4
264921	Transcriptional regulator, LysR family	332		3D	1ixcA01	-	89.3
265077	Lupus La protein homolog	329		3D	1s7aA00	-	90.9
266327	General transcription factor IIE subunit 1	321			-	-	98.1
266672	Transcriptional regulator, MarR family	318			-	-	90.6
189104	Transcriptional regulatory protein	317			-	-	36.7
263830	Phosphatidylinositol-3,4, 5-trisphosphate-dependent Rac exchange factor 1	315			-	-	88.0
266397	Transcription factor E	307			-	-	89.8
82193	Cullin-5, putative	303		3D	3dplC03	-	76.9
264289	RNA polymerase sigma factor	295			-	-	48.5
190403	RNA polymerase sigma factor	294			-	-	41.0
23119	HTH-type transcriptional regulator SarV	290			-	-	9.3
185747	RNA polymerase sigma factor	290			-	-	12.2
135755	Transcriptional regulator, gntR-family	289			-	-	0.0
196625	RNA polymerase sigma factor	287			-	-	28.0
262878	Transcription factor ETV7-like protein	286		3D	2lf7A01	-	70.7
264413	General transcription factor IIF subunit 2	283	EC	3D	1bbyA00	-	62.6
51110	Transcriptional regulator, MarR family	281		3D	4yifA00	-	41.8
118450	Transcriptional regulator, LysR family	279			-	-	1.4
45329	Transcriptional regulator, ArsR family	262		3D	2lkpA00	-	0.0
159567	RpiR family transcriptional regulator	262	EC		-	-	13.1
242286	RNA polymerase sigma factor SigF	257			-	-	10.4
87092	GntR family transcriptional regulator	256			-	-	25.5
264672	Vacuolar protein-sorting-associated protein 25	256		3D	3cuqC02	-	96.6
13929	Hypothetical transcriptional regulatory protein	256			-	-	0.0
75423	ArsR family transcriptional regulator	256			-	-	0.0
264399	Probable RuBisCO transcriptional regulator	255			-	-	91.0
264905	Cullin 2, isoform A	251			-	-	88.6
102699	Oxidative stress response regulatory protein OxyS	249			-	-	31.3
16918	Transcriptional regulator MarR family	248			-	-	88.0
263171	Phosphatidylinositol-3,4, 5-trisphosphate-dependent Rac exchange factor 1	246			-	-	67.4
266627	Phenylalanine--tRNA ligase alpha subunit	244	EC		-	-	98.5
266129	Regulatory protein RecX	244			-	-	94.6
260739	RecX family transcriptional regulator	243			-	-	2.8
263017	Forkhead box protein M1	239		3D	3g73A00	-	73.2
153391	RNA polymerase sigma factor	236			-	-	40.0
263322	Glycerol operon regulatory protein	235			-	-	39.5
266270	Vacuolar protein-sorting-associated protein 25	232		3D	1u5tC02	-	96.6
64942	PadR family transcriptional regulator	230			-	-	0.0
266205	Regulatory protein RecX	226			-	-	97.0
41106	Putative transcriptional regulatory protein	226	EC		-	-	0.0
91891	Fur family transcriptional regulator	226			-	-	8.9
165255	Terminase small subunit Gp1	226			-	-	3.6
264352	Resistance candidate RPP8-like protein	225			-	-	97.0
264944	Histone acetyltransferase KAT6A	225	EC		-	-	80.6
6572	Transcriptional repressor	225			-	-	0.0
198007	Transcriptional regulator	225			-	-	0.0
265559	LysR family transcriptional regulator	221			-	-	92.1
165123	RNA polymerase sigma factor	217			-	-	43.4
266825	Transcriptional activator protein TraR	216		3D	1h0mA02	-	65.9
177265	Transcriptional regulator, GntR family protein	214			-	-	20.8
48784	ArsR family transcriptional regulator	213			-	-	15.5
265163	Putative histone H1.6	212		3D	1hstA00	-	84.2
265627	Rap guanine nucleotide exchange factor 4	209	EC	3D	1o7fA02	-	70.8
249943	Transcription factor FapR	209		3D	4a0xA01	-	20.7
4350	Transcriptional regulator, MarR family	208			-	-	47.5
266853	Transcriptional regulator, LysR family	206		3D	3szpA01	-	67.3
170600	GntR family transcriptional regulator	205			-	-	63.5
69522	Phenazine-specific methyltransferase	204		3D	2ip2A01	-	0.0
37814	Transcriptional regulatory , C terminal family protein	203			-	-	6.3
41496	Two-component system response regulator QseB	200			-	-	40.8
39542	Virulence transcriptional regulatory protein phoP	200			-	-	1.2
75877	HTH-type transcriptional regulator HdfR	200			-	-	27.8
266768	Transcriptional regulator, GntR family	199			-	-	49.4
91893	RNA polymerase sigma factor	197			-	-	0.0
3166	Transcriptional regulator TcaR	197			-	-	19.0
231397	Glycerol-3-phosphate regulon repressor	196			-	-	0.0
60574	Two-component response regulator	196			-	-	0.0
262811	1-phosphatidylinositol 3-phosphate 5-kinase	194	EC		-	-	61.1
122981	DNA-binding transcriptional activator MhpR	193			-	-	62.4
87956	IclR family transcriptional regulator	193			-	-	55.1
44945	Flagellar transcriptional regulator FtcR	191			-	-	21.3
265769	Transcriptional activator CadC, putative	188			-	-	83.9
11116	MarR family transcriptional regulator	185			-	-	9.6
266059	Homologous-pairing protein 2 homolog	183		3D	2mh2A00	-	94.6
144041	Zinc uptake regulation protein Zur	180			-	-	39.7
116906	LuxR family transcriptional regulator	178			-	-	12.1
266110	Regulatory protein RecX	178			-	-	95.2
263306	Cell division protein FtsK	175	EC		-	-	45.9
5529	Uncharacterized protein	173	EC		-	-	12.1
265068	Holliday junction DNA helicase RuvB	171	EC	3D	1in4A02	-	90.6
265583	General transcription factor IIE subunit 2	171		3D	1d8jA00	-	82.6
231393	Bkd operon transcriptional regulator	170			-	-	9.6
107780	RNA polymerase sigma factor	169			-	-	0.0
113326	DEP domain-containing mTOR-interacting protein	165			-	-	56.2
5504	MarR family transcriptional regulator	164		3D	2nyxA01	-	2.7
263117	Histone H1	164			-	-	83.0
263661	HTH-type transcriptional regulator NsrR	161			-	-	57.0
263652	RNA polymerase sigma factor sigE, chloroplastic/mitochondrial	159			-	-	63.0
266223	Transcription factor E	157		3D	1q1hA00	-	98.7
13928	Transcriptional regulator, MarR family	148			-	-	2.7
66418	Putative transcriptional regulator ArsR family	148			-	-	11.6
265981	Ferric uptake regulator, Fur family	147			-	-	63.6
263346	Heterochromatin protein 1-binding protein 3	147		3D	2rqpA00	-	74.3
180367	Transcriptional regulatory protein PtsJ	147			-	-	17.7
20120	HTH-type transcriptional regulator SarS	146		3D	1p4xA02	-	1.7
184990	Probable Transcription initiation factor IIF subunit beta	145	EC		-	-	10.7
17382	HTH-type transcriptional regulator SarS	145		3D	1p4xA01	-	0.0
264610	Coffea canephora DH200=94 genomic scaffold, scaffold_5	145			-	-	72.8
262939	La-related protein 7	144			-	-	56.3
178747	GntR family transcriptional regulator	142	EC		-	-	37.6
263160	DNA-directed RNA polymerase III subunit RPC3	142	EC	3D	2xubA04	-	67.2
262949	Meiotic nuclear divisions 1 homolog	140			-	-	70.1
15274	Uncharacterized HTH-type transcriptional regulator BCE_2019	139			-	-	42.8
173052	RNA polymerase sigma factor SigM	139			-	-	30.3
153408	IclR family transcriptional regulator	138			-	-	26.0
83384	LysR family transcriptional regulator	138			-	-	29.5
264975	Regulatory protein RecX	136		3D	3dfgA03	-	46.0
266179	Transcriptional regulator, RpiR family	136	EC		-	-	84.4
263441	General transcription factor IIF subunit 1	133		3D	1i27A00	-	50.4
263569	Holliday junction ATP-dependent DNA helicase RuvB	133	EC		-	-	55.9
139798	GntR family transcriptional regulator	132			-	-	16.5
263140	Heterochromatin protein 1-binding protein 3	131			-	-	48.4
148444	GntR family transcriptional regulator	130			-	-	11.6
264983	RNA polymerase sigma factor	129			-	-	89.7
165143	P-hydroxybenzoate hydroxylase transcriptional activator	128			-	-	15.2
175375	YeiL transcriptional activator	127			-	-	11.4
263168	Heterochromatin protein 1-binding protein 3	127			-	-	48.4
265946	Regulatory protein RecX	127			-	-	76.3
227791	HTH-type transcriptional regulator IolR	126			-	-	6.4
7754	HTH-type transcriptional regulator CymR	126		3D	2y75A00	-	31.3
76809	ArsR family transcriptional regulator	126			-	-	24.1
153521	Holliday junction ATP-dependent DNA helicase RuvB	125	EC		-	-	11.7
265434	RNA polymerase III subunit Rpc82	124			-	-	87.0
33860	DNA-binding response regulator TorR	124			-	-	24.9
266079	LuxR family transcriptional regulator	123			-	-	77.4
18394	Replication termination protein	123		3D	1bm9A00	-	0.0
28197	ArsR family transcriptional regulator	122			-	-	0.0
127244	GntR family transcriptional regulator	121			-	-	0.0
266845	Uncharacterized ATP-binding protein MJ1301	120		3D	3bjoA00	-	99.4
11111	Uncharacterized HTH-type transcriptional regulator SAR2349	117		3D	4em0B00	-	29.1
231412	Transcriptional regulator, AsnC family	117			-	-	14.2
7528	Rap guanine nucleotide exchange factor 5	117			-	-	76.4
118490	Fur family transcriptional regulator	116		3D	5fd5A01	-	24.0
262758	Interferon regulatory factor 3	115		3D	2o61A04	-	52.7
266074	Regulatory protein RecX	112			-	-	84.4
262936	Two-component response regulator KdpE	109	EC		-	-	53.7
264443	CTP-dependent riboflavin kinase	109	EC		-	-	83.0
154382	RNA polymerase sigma factor	108			-	-	48.3
18515	MarR family transcriptional regulator	106			-	-	17.0
265031	Arginine repressor	105	EC		-	-	75.4
78053	Forkhead transcription factor HCM1	105			-	-	65.4
70198	Lysine-specific histone demethylase 1B	105			-	-	28.5
159555	Anaphase-promoting complex subunit 2	105		3D	4yiiA00	-	70.8
118428	AT-rich interactive domain-containing protein 2	104			-	-	53.1
265029	ETS translocation variant 2	104			-	-	74.2
263672	Forkhead box protein R1	103			-	-	76.4
230962	Transcriptional regulator of fimbriae expression FimY	103			-	-	16.6
218284	Fimbriae regulatory protein FimW	101			-	-	0.0
198066	Putative stage III sporulation protein E	101			-	-	9.3
206848	Arginine regulator	101			-	-	3.9
15405	Uncharacterised protein	101		3D	1xd7A00	-	6.6
47368	Transcriptional regulator ArsR family	99			-	-	12.1
91901	LysR family transcriptional regulator	97			-	-	6.0
166533	RNA polymerase sigma factor	97			-	-	55.7
266680	6-hydroxytryprostatin B O-methyltransferase	96	EC		-	-	92.0
87124	Apoptotic protease-activating factor 1	96		3D	1z6tA04	-	45.2
265389	Regulatory protein RecX	95			-	-	37.9
159792	Transcriptional regulator, GntR family	93			-	-	21.4
167802	DNA-binding protein, 42 kDa	92			-	-	15.3
266330	HTH-type transcriptional regulator LrpA	92		3D	2dbbA01	-	93.1
265416	Replication protein A 32 kDa subunit	89		3D	1dpuA00	-	79.8
20118	MarR family transcriptional regulator	89			-	-	8.1
264920	Histone H1oo	89			-	-	86.6
262950	SEC62 splice variant	89			-	-	58.7
265699	Putative LysR type transcriptional regulator	89			-	-	60.9
165245	Anaphase promoting complex APC	88		3D	1lddA00	-	13.3
263257	Putative cullin-like protein 1	88			-	-	48.0
194282	Arginine repressor	85			-	-	18.9
263260	La ribonucleoprotein domain family, member 6	84			-	-	43.5
44231	Putative P4-specific DNA primase	83	EC	3D	1ka8A00	-	13.3
263330	Riboflavin kinase	83	EC		-	-	18.3
153382	Segregation and condensation protein B	83			-	-	12.6
258821	Regulatory protein recx	82			-	-	0.0
265712	Rrf2 family transcriptional regulator	82			-	-	75.4
55863	Two-component response regulator	81			-	-	0.0
5476	MarR family transcriptional regulator	81			-	-	0.0
7450	Transcriptional regulator MarR family	81			-	-	0.0
189115	Trehalose operon transcriptional repressor	81			-	-	0.0
47837	DNA-binding response regulator	81			-	-	0.0
65066	Phosphate regulon transcriptional regulatory protein PhoB	81			-	-	0.0
91902	HTH-type transcriptional regulator CitR	81			-	-	0.0
118501	Segregation and condensation protein B	81			-	-	0.0
159622	Segregation and condensation protein B	81			-	-	0.0
25055	DNA-binding protein YizB	81			-	-	0.0
264731	Two-component response regulator OmpR subfamily	81			-	-	82.1
3408	HTH-type transcriptional repressor NicR	81			-	-	0.0
69292	Uncharacterized protein	81			-	-	0.0
16461	MarR family transcriptional regulator	81			-	-	0.0
249334	Regulatory protein RecX	81			-	-	0.0
114607	Crp-like transcriptional regulator	80			-	-	0.0
266992	HTH-type transcriptional regulator SarT	80			-	-	79.3
122962	E3 ubiquitin-protein ligase SHPRH	80	EC		-	-	30.9
180410	Transcription initiation factor IIF subunit beta	80	EC		-	-	22.7
14356	Multidrug resistance operon repressor	78		3D	1lnwA01	-	13.4
265884	Disease resistance protein ADR1	78			-	-	94.7
262729	HTH-type transcriptional repressor NsrR	77			-	-	27.0
267053	Methionine aminopeptidase 2	77	EC	3D	3fm3A02	-	76.7
223095	Transcriptional regulator	76			-	-	68.1
165269	Holliday junction DNA helicase	76	EC		-	-	20.0
3738	DEP domain-containing mTOR-interacting protein	75			-	-	40.6
262900	Pre-rRNA processing protein FHL1	75			-	-	39.9
105738	Lhp1p	75			-	-	6.6
267006	Replication protein 15	75			-	-	72.1
266023	Transcriptional regulatory protein CitT	74			-	-	62.0
22005	Poly-beta-hydroxybutyrate-responsive repressor	74			-	-	3.2
266668	Transposase	73			-	-	83.0
16596	Ets DNA-binding protein pokkuri	73			-	-	45.9
266673	P fimbrial regulatory protein KS71A	71		3D	2htjA01	-	96.2
266674	Possible regulatory protein RecX-like protein	71			-	-	76.1
266136	ORC1-type DNA replication protein	70			-	-	83.3
131563	H1 histone family, member X	70		3D	2lsoA00	-	25.3
118659	DNA-binding transcriptional regulator CynR	69			-	-	9.7
127157	LysR family transcriptional regulator	68			-	-	20.7
264913	DNA-directed RNA polymerase III subunit RPC3	67			-	-	70.5
31616	Integral membrane protein GPR155	67			-	-	68.8
184972	M protein trans-acting positive transcriptional regulator	67			-	-	56.8
266829	Selenocysteine-specific translation elongation factor SelB	67		3D	1lvaA02	-	64.7
21686	Pleckstrin-2	66		3D	1v3fA00	-	56.4
66512	Putative transcriptional regulator LysR family	66			-	-	16.9
266681	Replication factor A2	66			-	-	51.6
122991	LysR family transcriptional regulator	65			-	-	2.7
48786	Transcriptional regulator	65			-	-	0.0
242220	L-fucose operon activator	64	EC		-	-	0.0
263183	Double-stranded RNA-specific adenosine deaminase	64	EC	3D	1xmkA00	-	47.2
159999	RNA polymerase sigma factor	64			-	-	0.0
229025	AsnC family transcriptional regulator	64			-	-	0.0
13044	Putative transcriptional regulator MarR family	64			-	-	0.0
18393	Staphylococcal accessory regulator U	64			-	-	0.0
76000	Forkhead domain protein	64			-	-	15.5
153198	Sigma factor PvdS, controling pyoverdin biosynthesi	63			-	-	28.5
202122	Nuclear apoptosis-inducing factor 1	63			-	-	36.4
264292	Gluconate operon transcriptional repressor	62			-	-	30.0
266166	Regulatory protein RecX	62			-	-	84.3
97577	Transcriptional regulator, LysR family	62			-	-	1.4
133804	Sro9p	61			-	-	19.7
264754	Holliday junction ATP-dependent DNA helicase RuvB	60	EC		-	-	61.8
202215	DNA translocase SftA	59			-	-	25.5
92278	LysR-family transcriptional regulator	58			-	-	18.5
238910	RNA polymerase sigma factor	58			-	-	8.7
231374	Proline dehydrogenase transcriptional activator	58			-	-	11.2
264518	RNA polymerase sigma factor SigS	56			-	-	17.0
31074	HTH-type transcriptional regulator rot	56			-	-	0.0
211724	RNA polymerase subunit, putative	56			-	-	14.8
262822	PLEK protein variant	56		3D	1w4mA00	-	44.8
197909	Holliday junction ATP-dependent DNA helicase RuvB	56	EC		-	-	51.9
179778	Putative HTH-type transcriptional regulator YfjR	56			-	-	16.4
207720	Glycerol-3-phosphate regulon repressor	56			-	-	18.1
20119	Heat shock transcription factor, Y-linked	55			-	-	80.0
118433	Ferric uptake regulation protein	55			-	-	10.1
51109	Listeriolysin positive regulatory protein	54		3D	1omiA03	-	15.1
32908	Transcriptional regulatory protein tcrA	53			-	-	0.0
264985	Heat shock factor protein 5	53			-	-	83.9
88386	Hypothetical transcriptional regulatory protein	50			-	-	0.0
73218	Transcriptional regulator, LysR family	50			-	-	0.0
98040	Transcription factor E	50			-	-	40.8
99029	Transcriptional regulator, LysR family	50			-	-	9.7
44263	Copper-sensing two-component system response regulator CpxR	50			-	-	1.1
200059	AsnC family transcriptional regulator	50			-	-	0.0
34772	Putative DNA-binding protein YwzG	50			-	-	0.0
264713	Possible regulatory protein RecX-like protein	50			-	-	28.2
31631	Alkaline phosphatase synthesis transcriptional regulatory protein PhoP	50			-	-	10.1
72141	Transcriptional regulator	50			-	-	1.4
63416	Two-component system response regulator	49			-	-	0.0
113353	Segregation and condensation protein B	49			-	-	0.0
193547	ArgR family transcriptional regulator	49			-	-	0.0
4874	ArsR family transcriptional regulator	49			-	-	0.0
170431	RNA polymerase sigma factor	49			-	-	0.0
72161	Negative transcription regulator PadR	49			-	-	0.0
102667	Central glycolytic genes regulator	49			-	-	0.0
83032	LysR family transcriptional regulator	49			-	-	0.0
89292	Transcriptional activator IlvY	49			-	-	0.0
9134	HTH-type transcriptional regulator YvmB	49			-	-	0.0
131596	Uncharacterized HTH-type transcriptional regulator YdhC	49			-	-	0.0
131560	Rtt101p	48			-	-	16.0
265424	Riboflavin kinase	48	EC		-	-	67.5
80016	Rgd2p	48			-	-	4.9
264823	Regulatory protein RecX	48			-	-	13.1
211139	Selenocysteine-specific elongation factor	48			-	-	2.0
47758	Eukaryotic translation initiation factor 3 subunit K	48			-	-	17.7
107772	Transcriptional regulator, LysR family	48			-	-	49.8
97251	Cell division cycle-related protein	47		3D	3o2pE00	-	4.2
134150	IclR family transcriptional regulator	47			-	-	12.8
264237	E2F transcription factor-like E2FE	47			-	-	53.4
20528	Protein MGA1	47			-	-	10.8
97257	Iron-regulated virulence regulatory protein IrgB	47			-	-	6.4
266812	RNA polymerase sigma-70 factor	47			-	-	97.3
263193	Cell division cycle 6 homolog	46			-	-	43.2
265780	Regulatory protein RecX	46			-	-	56.4
61391	Transcriptional regulator	46			-	-	14.6
148389	Transcriptional regulator	46			-	-	35.4
91689	Vacuolar protein-sorting-associated protein 36	45		3D	1u5tB01	-	7.5
118563	Transcriptional regulator, LysR family	45			-	-	10.4
189136	Protein SLF1	45			-	-	12.3
165280	Vacuolar protein-sorting-associated protein 36	45		3D	1u5tB02	-	6.7
265592	Arginine repressor	43			-	-	63.1
266008	Regulatory protein RecX	42			-	-	80.3
263454	Holliday junction ATP-dependent DNA helicase RuvB	42	EC		-	-	28.7
202206	DNA translocase FtsK	42			-	-	34.1
228633	RNA polymerase sigma factor SigA	42		3D	1iw7F02	-	2.3
224592	DeoR family transcriptional regulator	41			-	-	21.0
115984	HTH-type transcriptional regulator LinR	41			-	-	0.0
38009	DNA-binding response regulator	41			-	-	2.8
169859	Transcriptional regulator LuxR family	40			-	-	13.0
147079	GntR family transcriptional regulator	39			-	-	45.3
263509	Segregation and condensation protein B	39		3D	3w6kB00	-	35.8
256234	Regulatory protein RecX	39			-	-	0.0
251910	Regulatory protein RecX	39			-	-	7.8
266767	Z-DNA binding protein 1	39		3D	2l4mA00	-	59.7
52398	Putative 2-component transcriptional regulator	39			-	-	49.3
121816	Transcriptional regulator, LysR family	38			-	-	0.0
113601	Transcriptional regulator, LysR family	38			-	-	2.4
263455	Segregation and condensation protein B	38			-	-	29.0
265111	Segregation and condensation protein B	37			-	-	83.8
49764	Regulatory component QseB	37			-	-	17.6
253250	Cyclic nucleotide binding protein	37			-	-	9.9
262686	Rap guanine nucleotide exchange factor 3	37			-	-	37.8
148681	RNA polymerase sigma factor SigA	37		3D	3wodF02	-	35.1
51689	Putative transcriptional regulator	37			-	-	9.7
75573	Transcriptional regulator LysR family	37			-	-	1.4
176477	Plastid RNA polymerase sigma factor	37			-	-	30.6
153519	RNA polymerase sigma factor RpoD	37			-	-	13.3
41012	Response regulator protein GraR	36			-	-	0.0
170399	Toxin co-regulated pilus biosynthesis protein P	36			-	-	0.0
159564	RNA polymerase sigma factor	36		3D	1ttyA00	-	49.3
180394	GntR family transcriptional regulator	36			-	-	0.0
153500	Segregation and condensation protein B	36			-	-	0.0
202198	Arginine repressor	36			-	-	0.0
153276	Holliday junction ATP-dependent DNA helicase RuvB	36	EC		-	-	3.2
263286	Sensory transduction protein BceR	36			-	-	37.4
256241	Regulatory protein RecX	36			-	-	0.0
148482	Transcriptional regulator, LuxR family	36			-	-	0.0
202199	S-DNA-T family DNA segregation ATPase FtsK/SpoIIIE	34			-	-	17.5
14955	Topoisomerase 6 subunit A3	33	EC		-	-	14.8
113359	GntR family transcriptional regulator	33		3D	4mgrA01	-	16.1
87134	Crp/Fnr family transcriptional regulator	32			-	-	10.8
227790	DeoR family transcriptional regulator	32			-	-	17.3
131229	Central glycolytic genes regulator	32			-	-	0.0
266049	Segregation and condensation protein B	31			-	-	92.2
263769	Probable LysR-family transcriptional regulator	31			-	-	51.6
264761	Biofilm growth-associated repressor	31		3D	3pqjA00	-	38.8
170406	Positive control sigma-like factor	31	EC		-	-	17.9
266007	Regulatory protein RecX	31			-	-	72.5
266157	Transcriptional regulator, LuxR family	30			-	-	97.4
263217	DNA-binding response regulator CreB	30			-	-	37.0
57565	Probable transcription factor HMS2	30			-	-	5.8
262699	ATP-dependent DNA helicase Q1	30	EC		-	-	35.3
247115	Regulatory protein RecX	29			-	-	0.0
90415	Uncharacterized HTH-type transcriptional regulator YdfF	29			-	-	11.6
91924	LysR family transcriptional regulator	29			-	-	8.2
264902	DNA translocase FtsK	29			-	-	76.2
30942	Transcriptional repressor SmtB	28		3D	1r1tB00	-	22.9
264506	Histone H1, early embryonic	28			-	-	79.3
207250	Transcriptional regulator, AsnC family	27			-	-	0.0
68059	Bacterial regulatory s, luxR family protein	27			-	-	1.2
265888	DNA-directed RNA polymerase III subunit RPC3	27	EC		-	-	45.8
38626	DeoR faimly transcriptional regulator	27			-	-	12.8
175389	Anthrax toxin expression trans-acting positive regulator	27			-	-	13.1
16089	Transcriptional regulator, MarR family	27			-	-	34.4
66548	Transcriptional regulator, LysR family	26			-	-	1.3
100154	Transcriptional regulator, LysR family	26			-	-	32.1
262855	Regulatory protein VirG	26			-	-	43.7
5013	Transcriptional regulator, MarR family	26			-	-	1.3
113602	Transcriptional regulator, LysR family	26			-	-	2.7
95258	Paired box protein Pax-6	26			-	-	37.0
264951	DNA-directed RNA polymerase III subunit RPC3	26	EC		-	-	59.2
44232	Transcriptional regulator	26			-	-	2.9
265515	Segregation and condensation protein B	26			-	-	42.2
13045	Protein aau3	26			-	-	3.8
263222	Holliday junction ATP-dependent DNA helicase RuvB	26	EC		-	-	24.7
266084	26S proteasome regulatory subunit	26			-	-	82.8
154378	Transcriptional activator protein RaiR	26			-	-	44.9
202205	Cell division protein FtsK	26			-	-	15.0
69293	Transcriptional regulatory protein DltR	25			-	-	0.0
122973	Segregation and condensation protein B	25			-	-	0.0
83850	ESCRT-II complex subunit VPS36	25			-	-	8.0
202705	DNA translocase ftsK	25			-	-	11.7
91911	LysR family transcriptional regulator	25			-	-	0.0
4101	MarR family transcriptional regulator	25			-	-	0.0
202194	S-DNA-T family septal DNA translocator	25			-	-	0.0
18400	HTH-type transcriptional regulator YxaD	25			-	-	0.0
135201	DeoR family transcriptional regulator	25			-	-	0.0
263625	Regulatory protein RecX	25			-	-	0.0
148546	GntR family transcriptional regulator	25			-	-	0.0
82781	RNA polymerase sigma factor SigY	25			-	-	0.0
122843	LuxR family transcriptional regulator	25			-	-	10.6
267054	Putative nitrilotriacetate monooxygenase component B	25	EC		-	-	0.0
168517	RNA polymerase sigma factor	25			-	-	0.0
264521	Uncharacterized HTH-type transcriptional regulator PYRAB06490	25		3D	1ri7A01	-	30.4
266404	Regulatory protein RecX	25			-	-	90.8
193577	Arginine repressor	25			-	-	0.0
25123	Transcriptional regulatory protein MalR	25			-	-	0.0
107900	HTH-type transcriptional regulator CysL	25			-	-	5.1
109622	Uncharacterized protein	24			-	-	36.0
185144	PTS sugar transporter subunit IIA	24	EC		-	-	26.2
227780	Uncharacterized protein PF11_0213	24			-	-	8.5
167029	Fork-head transcriptional regulator FHL1	23			-	-	5.2
264865	Arginine repressor	23			-	-	60.6
264508	Putative Transcriptional regulatory protein fixJ	23			-	-	44.7
266717	AflO/ omtB/ dmtA/ O-methyltransferase B	23	EC		-	-	41.6
163664	Transcriptional regulator, GntR family	22	EC		-	-	8.3
242828	ESCRT-II complex subunit VPS36	22			-	-	13.1
131555	Cul3p	22			-	-	2.7
19508	Interferon regulatory factor 7	22		3D	2o61A03	-	24.0
15984	Replicase A	21			-	-	10.9
139826	GntR family transcriptional regulator	21			-	-	12.1
186668	HTH domain family	21	EC		-	-	17.8
266048	RNA polymerase sigma-54 factor	21			-	-	24.3
239661	Plastid RNA polymerase sigma factor	20			-	-	2.4
82765	cDNA clone:J013128B21, full insert sequence	20			-	-	45.3
30952	RepL	20			-	-	25.3
102635	HTH-type transcriptional regulator MetR	20			-	-	37.3
193600	HTH domain family	20	EC		-	-	6.3
52994	KDP operon transcriptional regulatory protein KdpE	20			-	-	13.1
57637	Transcriptional activator protein irlR	20			-	-	2.3
165689	Phage-like element PBSX protein XkdB	20			-	-	12.7
9995	HTH-type transcriptional regulator SarZ	20			-	-	62.6
127212	Double-stranded RNA-binding protein	20		3D	1oyiA00	-	22.6
266014	Holliday junction ATP-dependent DNA helicase RuvB	19	EC		-	-	67.5
189868	Histone acetyltransferase	19	EC		-	-	14.6
263755	Disease resistance protein RPP13	19			-	-	64.7
4722	MarR family transcriptional regulator	19			-	-	7.8
153428	Putative PLP-dependent transcriptional regulator	19			-	-	10.4
262741	Transcriptional regulator, MarR family	19			-	-	22.5
72144	Lysine-specific histone demethylase 1-1-like protein	19			-	-	24.2
265751	cDNA FLJ50125, highly similar to Cullin-2	19			-	-	39.3
100004	La-related protein 6A	19			-	-	38.0
11115	HTH-type transcriptional regulator YwaE	19			-	-	21.1
71857	Transcriptional regulator, Crp/Fnr family	19			-	-	32.7
118894	Transcriptional regulator Dnr	19			-	-	2.7
259926	Transcriptional regulatory protein CitB	18			-	-	16.1
155224	ATP-dependent DNA helicase RuvB	18	EC	3D	1ixsB03	-	23.9
235221	Sigma factor A isoform 2	18			-	-	24.1
266633	Carminomycin 4-O-methyltransferase DnrK	18	EC	3D	1tw2A01	-	55.9
166344	Anaphase-promoting complex subunit 2	18			-	-	12.3
265367	Phenylalanine--tRNA ligase alpha subunit	17	EC		-	-	67.4
22532	Transcription factor SFL1	17			-	-	0.0
51129	Transcriptional regulator	17			-	-	0.0
180612	HTH domain family	17	EC		-	-	9.4
90042	Hydrogen peroxide-inducible genes activator	17			-	-	0.0
167206	Transcriptional enhancer	17			-	-	4.9
153278	Holliday junction ATP-dependent DNA helicase RuvB	17	EC		-	-	5.9
215795	ISPsy9, transposase OrfA	17			-	-	0.0
263245	Sterigmatocystin 8-O-methyltransferase	17	EC		-	-	42.0
185002	Transcriptional regulator, GntR family	17			-	-	0.0
263270	Late blight resistance protein, putative	17			-	-	51.5
97260	HTH-type transcriptional regulator YxjO	17			-	-	0.0
259886	Regulatory protein RecX	17			-	-	4.8
5475	HTH-type transcriptional regulator YvaV	16			-	-	0.0
151475	CTP-dependent riboflavin kinase	16	EC		-	-	0.0
171146	Uncharacterized protein	16			-	-	0.0
206877	HTH-type transcriptional repressor YcnK	16			-	-	0.0
264925	Regulatory protein RecX	16			-	-	55.5
91887	LysR family transcriptional regulator	16			-	-	0.0
254783	Regulatory protein RecX	16			-	-	0.0
189435	Lrp/AsnC family transcriptional regulator	16			-	-	0.0
75407	Activator of middle period transcription	16			-	-	0.0
29457	Putative transcriptional regulatory protein	16			-	-	0.0
83158	HTH-type transcriptional regulator YusO	16			-	-	0.0
20127	MarR family transcriptional regulator	16			-	-	0.0
58704	Transcriptional regulator, LysR family	16			-	-	0.0
170994	RNA polymerase sigma factor	16			-	-	0.0
266620	Selenocysteine-specific translation elongation factor SelB	16			-	-	0.0
69322	Replicase A	16			-	-	0.0
214896	Z-DNA binding protein 1	16		3D	2lnbA00	-	27.5
103489	DOMINA protein	16			-	-	17.1
51114	Eukaryotic translation initiation factor 3 subunit K	16			-	-	39.1
206872	Transcriptional repressor AccR	16			-	-	0.0
61852	HTH-type transcriptional regulator GltR	16			-	-	0.0
9132	NO-dependent activator of the ResDE regulon	16			-	-	0.0
189297	Uncharacterized HTH-type transcriptional regulator B-115	15			-	-	47.7
266269	Regulatory protein RecX	15			-	-	95.4
126568	E2F transcription factor-like E2FE	15			-	-	11.6
159563	RNA polymerase sigma factor	15			-	-	43.2
131549	Double-stranded RNA-specific adenosine deaminase	15	EC	3D	1qgpA00	-	23.1
148460	Eukaryotic translation initiation factor 3 subunit K	15			-	-	10.1
93882	LysR family transcriptional regulator	15			-	-	4.2
264703	Regulatory protein RecX	14			-	-	24.6
193668	Replication protein A 32 kDa subunit A	14			-	-	0.0
165251	Homologous-pairing protein 2 homolog	14			-	-	12.6
107696	HTH-type transcriptional regulator PhcA	14	EC		-	-	14.2
265885	Regulatory protein NocR	14			-	-	37.2
202222	DNA translocase FtsK 2	14	EC		-	-	18.0
265094	RNA polymerase sigma-54 factor	14			-	-	78.5
264224	Holliday junction ATP-dependent DNA helicase RuvB	14	EC		-	-	43.3
265344	Regulatory protein RecX	13			-	-	23.5
263483	Cullin 7	13			-	-	53.0
30937	Probable transcriptional regulator ycf27	13			-	-	35.8
109583	Response regulator VieA	13			-	-	0.0
264418	Regulatory protein RecX	13			-	-	17.9
189363	Transcriptional regulator, putative	13			-	-	1.8
239481	Uncharacterized protein	13			-	-	14.8
175397	General transcription factor IIF subunit 1	13			-	-	15.3
263821	Holliday junction ATP-dependent DNA helicase RuvB	12	EC		-	-	13.4
266172	Telomere repeat-binding factor 4	12			-	-	49.5
78980	Cullin-2	12			-	-	33.8
265842	HTH-type transcriptional regulator AlkS	12			-	-	63.4
165253	Anaphase-promoting complex subunit 2	12			-	-	13.4
136016	Putative HTH-type transcriptional regulator	12			-	-	29.4
98765	Histone acetyltransferase	12	EC		-	-	25.2
97512	Transcriptional regulator LysR family	12			-	-	6.9
150798	Transcriptional regulatory protein fixJ	12		3D	1x3uA01	-	10.7
264340	DNA translocase FtsK	12			-	-	33.6
197910	Arginine repressor	11			-	-	13.1
83258	HTH-type transcriptional regulator DgdR	11			-	-	11.3
203382	Cell division protein FtsK	11			-	-	24.0
198059	CG9273 protein	11			-	-	23.4
265991	Heat shock transcription factor	11			-	-	77.2
54445	Transcriptional regulator	11			-	-	3.8
92032	Transcriptional regulator, LysR family	11			-	-	13.3
189120	RNA polymerase sigma-70 factor	11			-	-	11.4
265602	Transcriptional regulatory protein TdiR	11			-	-	53.1
98416	HTH-type transcriptional regulator AbgR	11			-	-	0.0
19442	Interferon regulatory factor 7	11		3D	3qu3A01	-	2.7
256232	Regulatory protein RecX	10			-	-	0.0
262690	Type 2 DNA topoisomerase 6 subunit A	10	EC		-	-	17.0
202212	Putative cell division protein	10			-	-	1.8
263980	Histone H1-I	10			-	-	57.1
158598	Transcriptional regulator, GntR family	10			-	-	10.0
265822	Regulatory protein RecX	10			-	-	49.8
264320	Uncharacterized HTH-type transcriptional regulator MG101 homolog	10			-	-	26.8
263714	Holliday junction ATP-dependent DNA helicase RuvB	10	EC		-	-	42.4
102679	Putative transcriptional regulator	10			-	-	10.0
48449	RNA recognition motif-containing protein	10			-	-	17.9
83337	Cullin 5	10			-	-	2.4
254812	Regulatory protein RecX	10			-	-	2.9
109024	RNA polymerase sigma factor YlaC	10			-	-	2.8
263314	RNA polymerase sigma factor SigA	10			-	-	15.6
252588	Regulatory protein RecX	10			-	-	2.0
249340	Regulatory protein RecX	9			-	-	0.0
202209	Arginine repressor	9			-	-	0.0
144014	RNA polymerase sigma70	9			-	-	0.0
207018	RNA polymerase sigma-70 factor	9			-	-	0.0
221018	Protein traJ	9			-	-	9.6
266587	Regulatory protein RecX	9			-	-	75.2
256248	Regulatory protein RecX	9			-	-	0.0
123592	ESCRT-II complex subunit VPS22	9			-	-	8.9
153255	Segregation and condensation protein B	9			-	-	0.0
257671	Regulatory protein RecX	9			-	-	0.0
82769	ArsR family transcriptional regulator	9			-	-	0.0
128137	CG12065, isoform C	9			-	-	2.1
231366	30S ribosomal protein S25e	9			-	-	0.0
222249	Transcriptional regulator AzlB	9			-	-	0.0
13935	Vacuolar membrane-associated protein IML1	9			-	-	41.7
199336	HTH-type transcriptional repressor GlcR	9			-	-	0.0
16025	MarR family transcriptional regulator	9			-	-	0.0
131570	Segregation and condensation protein B	9			-	-	0.0
156502	Transcriptional regulator, RpiR family/SIS domain protein	9			-	-	0.0
122968	Segregation and condensation protein B	9			-	-	0.0
264877	Uncharacterized HTH-type transcriptional regulator PYRAB04820	9			-	-	37.3
179551	RNA polymerase sigma factor	9			-	-	0.0
48681	VIRF-1	9			-	-	0.0
249339	Regulatory protein RecX	9			-	-	0.0
189109	Two component regulator	9			-	-	0.0
264494	Uncharacterized HTH-type transcriptional regulator PH1013	9		3D	2ia0A01	-	32.9
127237	GntR family transcriptional regulator	9			-	-	5.9
134177	Transcriptional regulator, ArsR family	9			-	-	0.0
263969	Transcription factor E	9			-	-	37.0
263685	Transcription factor E	9			-	-	37.4
148433	Putative transcriptional regulator	9			-	-	0.0
235224	Putative HTH-type transcriptional regulator YuaB	9			-	-	0.0
47348	Heavy metal response regulator	9			-	-	0.0
69314	LysR family transcriptional regulator	9			-	-	0.0
159536	RNA polymerase sigma factor sigB	9			-	-	19.6
41021	ORC1-type DNA replication protein	8			-	-	13.7
195216	Os08g0242800 protein	8			-	-	6.0
256464	Aliphatic amidase regulator	8			-	-	7.2
82590	Histone acetyltransferase KAT6B	8			-	-	4.8
13043	Replication protein	8			-	-	0.0
265658	Regulatory protein RecX	8			-	-	33.9
127243	Telomere repeat-binding factor 2	8			-	-	34.9
30950	Naringenin 7-O-methyltransferase	8	EC		-	-	22.0
263647	Ferric uptake regulation protein	8			-	-	24.5
202929	Cell division protein FtsK	8			-	-	21.4
264666	Arginine repressor	8			-	-	5.3
36149	WGS project CABT00000000 data, contig 2.71	7			-	-	25.2
153520	Holliday junction ATP-dependent DNA helicase RuvB	7	EC		-	-	9.1
1225	DEP domain-containing protein 7	7			-	-	14.6
159572	Holliday junction ATP-dependent DNA helicase RuvB	7	EC		-	-	10.9
265593	Ubiquitin-protein ligase, Cullin 4	7			-	-	31.3
180392	RNA polymerase sigma factor sigA	7			-	-	12.3
69286	SWI/SNF complex subunit SWI3D	7			-	-	1.4
170413	RNA polymerase sigma factor sigC	7			-	-	14.7
37989	ORC1-type DNA replication protein	7			-	-	21.6
264347	Uncharacterized HTH-type transcriptional regulator PYRAB16920	7			-	-	22.3
97758	Brahma associated protein 170kD	7			-	-	4.4
221465	Lactose phosphotransferase system repressor	7			-	-	5.7
66402	LuxR family transcriptional regulator	7			-	-	7.8
53282	FKH-9, isoform a	7			-	-	11.9
173898	Carbon starvation induced regulator	7			-	-	5.0
94075	Cullin 1	6			-	-	13.5
57537	NisR	6			-	-	26.0
148403	E2F transcription factor-like E2FF	6			-	-	8.9
265489	Probable transcriptional regulator ycf29	6			-	-	47.9
264317	Z-DNA binding protein 1	6		3D	1j75A00	-	21.4
197899	Replication protein A 32 kDa subunit A	6			-	-	16.5
161217	Z-DNA binding protein kinase	6		3D	5j6xA00	-	7.3
240330	Transcription factor E2F7	6			-	-	18.3
265993	Putative xylose repressor	6			-	-	56.2
211043	RNA polymerase sigma-B factor	6			-	-	12.7
198568	Repressor protein c	6		3D	1g4dA00	-	1.8
263287	Holliday junction ATP-dependent DNA helicase RuvB	6	EC		-	-	17.8
254795	Regulatory protein RecX	6			-	-	21.2
123018	Type-2 restriction enzyme StsI	6	EC		-	-	12.9
153236	RNA polymerase sigma factor	6			-	-	13.5
264220	HTH-type transcriptional activator CmpR	6			-	-	40.1
103822	Transcription factor IIEbeta, isoform B	6			-	-	0.0
264915	Insertion element IS1 protein InsA	6			-	-	17.6
54384	ORC1-type DNA replication protein 13	6			-	-	3.5
264436	RNA polymerase sigma factor CnrH	5			-	-	32.4
115910	Telomere repeat-binding factor 3	5			-	-	7.1
7438	HTH-type transcriptional regulator NsrR	5			-	-	10.2
122986	Segregation and condensation protein B	5			-	-	5.6
189122	HTH-type transcriptional regulator TtgV	5			-	-	0.0
264380	Riboflavin kinase	5	EC	3D	3ctaA01	-	18.9
263566	Transcriptional regulator, SARP family	5			-	-	5.0
263797	Double-stranded RNA-specific adenosine deaminase	5	EC		-	-	35.5
153418	Segregation and condensation protein B	5			-	-	22.2
63489	Forkhead box protein N5	5			-	-	5.4
256261	Regulatory protein recX	5			-	-	18.8
264650	Segregation and condensation protein B	5			-	-	38.4
91920	HTH-type transcriptional regulator SyrM	5			-	-	1.4
142467	Transcriptional regulatory protein EntR	5			-	-	4.1
204690	Replication protein A 32 kDa subunit B	5			-	-	0.0
127214	Vacuolar protein-sorting-associated protein 25	5			-	-	19.3
97267	Transcriptional regulator, LysR family	5			-	-	0.0
251397	Regulatory protein RecX	5			-	-	7.4
97309	RE51913p	5			-	-	3.7
159632	CRISPR locus-related DNA-binding protein	5			-	-	8.1
52602	O-methyltransferase GliM	5			-	-	2.2
63498	Transcriptional regulator, MarR family	5			-	-	35.9
263468	Probable transcriptional regulator ycf27	5			-	-	33.2
231382	Selenocysteine-specific translation elongation factor	5	EC		-	-	5.5
264707	Arginine repressor	5			-	-	41.3
82770	Malonate utilization transcriptional regulator	5			-	-	0.0
197866	Beta-lactamase-like protein 2 homolog	5			-	-	8.9
262903	Probable transcriptional regulator ycf27	5			-	-	24.2
262696	HTH-type transcriptional repressor NsrR	5			-	-	10.3
249313	Regulatory protein RecX	5			-	-	13.3
51113	SWI/SNF complex subunit SWI3B	5			-	-	3.9
44246	Transcriptional regulatory protein SpaR	5			-	-	7.4
135883	Probable transcriptional regulatory protein	5			-	-	0.0
131584	Probable RNA polymerase sigma factor RfaY	4			-	-	0.0
197867	3H domain-containing protein	4			-	-	0.0
214914	Probable transcriptional regulator SauR	4			-	-	0.0
153285	Holliday junction ATP-dependent DNA helicase RuvB	4	EC		-	-	0.0
159588	MuA-transposase/repressor protein CI DNA-binding protein	4			-	-	0.0
266655	Regulatory protein RecX	4			-	-	50.9
481	ATP-dependent DNA helicase Q-like SIM	4	EC		-	-	7.2
153642	RNA polymerase sigma factor	4			-	-	27.6
266306	Regulatory protein RecX	4			-	-	77.3
263649	ArsR family transcriptional regulator	4			-	-	0.0
165231	RNA polymerase sigma factor sigD, chloroplastic	4			-	-	10.6
91905	Sperm-specific protein PHI-2B/PHI-3	4			-	-	12.2
63730	Uncharacterized protein	4			-	-	0.0
165242	Riboflavin kinase	4	EC		-	-	0.0
202180	Arginine repressor	4			-	-	0.0
258829	Regulatory protein RecX	4			-	-	0.0
64670	Uncharacterized protein	4			-	-	0.0
19777	FMN reductase NADH	4	EC		-	-	0.0
170386	Redox-sensing transcriptional repressor Rex	4			-	-	0.0
52318	SWI/SNF complex subunit SWI3C	4			-	-	7.8
78988	HTH-type transcriptional regulator CfxR	4			-	-	0.0
256221	Regulatory protein RecX	4			-	-	0.0
184956	Transcription initiation factor IIF subunit alpha	4			-	-	11.8
60573	Transcriptional activator protein FnrL	4			-	-	0.0
266833	O-methyltransferase 4	4			-	-	70.4
32910	Protein RcaC	4			-	-	0.0
183739	Transcription initiation factor IIF subunit beta	4	EC		-	-	3.7
189112	Transcription activator GvpE	4			-	-	0.0
39203	LuxR family transcriptional regulator	4			-	-	25.1
102682	Putative transcriptional regulator	4			-	-	17.6
170433	Putative HTH-type transcriptional regulator RmpR	4			-	-	0.0
9141	ExpG	4			-	-	0.0
144040	Segregation and condensation protein	4			-	-	0.0
15409	HTH-type transcriptional repressor NsrR	4			-	-	0.0
266706	Uncharacterized HTH-type transcriptional regulator MJ0229	4			-	-	64.5
265568	Riboflavin kinase	4	EC		-	-	0.0
264204	HTH-type transcriptional regulator TtuA	4			-	-	36.8
124049	IclR family transcriptional regulator	4			-	-	0.0
197881	Arginine repressor	4			-	-	0.0
148428	Redox-sensing transcriptional repressor Rex	4			-	-	0.0
66382	Replication protein	4			-	-	0.0
127235	Segregation and condensation protein	4			-	-	0.0
44385	Putative sensory transduction protein YcbL	4			-	-	0.0
140463	RNA polymerase, sigma-24 subunit, ECF subfamily	4			-	-	25.6
102669	Transcriptional regulator, LysR family	4			-	-	0.0
26676	DNA-binding transcriptional dual regulator	3			-	-	12.2
70123	La autoantigen-like 2	3			-	-	9.6
51457	Nitrate/nitrite response regulator protein	3			-	-	0.0
37985	Putative HTH-type transcriptional regulator MJ1563	3			-	-	16.4
60580	Amine oxidase family member 1	3			-	-	16.2
66417	La-related protein 7	3			-	-	0.0
265754	Forkhead transcription factor X	3			-	-	62.0
52213	Cell division control 6	3			-	-	6.3
74534	E2F transcription factor-like E2FD	3			-	-	7.5
130386	Telomere repeat-binding factor 1	3			-	-	11.0
219309	HTH-type transcriptional regulator sgrR	3			-	-	15.3
1909	Mediator of RNA polymerase II transcription subunit 34	3	EC		-	-	9.3
231378	Uncharacterized HTH-type transcriptional regulator PH1055	3			-	-	9.6
57535	Transcriptional activator protein PfeR	3			-	-	0.0
265613	Putative DNA-binding protein	3			-	-	44.5
90198	Uncharacterized HTH-type transcriptional regulator in the TAR-I ttuE-ttuC' intergenic region	3			-	-	8.7
135866	Heat-inducible transcription repressor HrcA	3			-	-	12.8
265724	Regulatory protein RecX	3			-	-	53.6
266689	Meiotic W68	3	EC		-	-	29.1
113405	LysR family transcriptional regulator	3			-	-	0.0
266122	Regulatory protein RecX	3			-	-	69.8
165275	Anaphase-promoting complex subunit 2	3			-	-	17.4
106345	Transcriptional regulator Crp/Fnr family	2			-	-	6.7
139803	E2F transcription factor-like E2FD	2			-	-	3.3
188359	Riboflavin kinase	2	EC		-	-	1.7
30947	Phenylalanyl-tRNA synthetase alpha chain	2	EC		-	-	3.2
265547	Regulatory protein RecX	2			-	-	39.3
159610	Holliday junction ATP-dependent DNA helicase RuvB	2	EC		-	-	7.6
129403	Transcriptional regulator, LysR family	2			-	-	17.4
264437	E2F/DP family winged-helix DNA-binding domain-containing protein	2			-	-	0.0
265417	Segregation and condensation protein B	2			-	-	40.3
193560	Replication protein RPA32B	2			-	-	12.7
45920	Cookie monster	2			-	-	3.2
231373	Transcriptional regulator, AsnC family	2			-	-	0.0
95175	Uncharacterized protein	2			-	-	9.3
104851	Transcriptional regulator, LysR family	2			-	-	2.4
6266	Putative HTH-type transcriptional regulator slr0846	2			-	-	2.0
231390	HTH-type transcriptional regulator Ptr2	2			-	-	0.0
127361	Transcriptional regulator, LysR family	2			-	-	4.2
231341	Transcriptional regulator, AsnC family	2			-	-	2.4
266609	Riboflavin kinase	2	EC		-	-	38.8
251392	Regulatory protein RecX	2			-	-	5.6
66384	Crossover junction endonuclease MUS81	2			-	-	0.0
233970	Selenocysteine-specific elongation factor	2			-	-	8.4
142020	Putative transcriptional regulator, Crp/Fnr family	2			-	-	9.8
202235	Glycerol-3-phosphate regulon repressor	2			-	-	10.0
248440	Capsule synthesis positive regulator AcpB	2			-	-	14.7
206866	DNA translocase FtsK	2			-	-	0.0
1910	PI protein	2			-	-	5.7
204141	Z-DNA binding protein kinase	2			-	-	0.0
9123	Putative HTH-type transcriptional regulator aq_268	2			-	-	0.0
264453	Riboflavin kinase	2	EC		-	-	33.3
266602	Alkylmercury lyase	2		3D	1s6lA01	-	35.1
266612	UPF0761 membrane protein Nmul_A0452	2			-	-	45.7
72153	SWI/SNF complex subunit SWI3A	2			-	-	4.2
22786	F26K24.21 protein	2			-	-	13.0
264704	RNA polymerase sigma factor	2			-	-	15.1
118524	Histone H1	2			-	-	15.5
266596	Riboflavin kinase	2	EC		-	-	46.4
265415	Cullin 3, isoform C	2			-	-	34.6
148462	Uncharacterized protein MJECL04	2			-	-	10.7
170420	Anaphase-promoting complex subunit Apc2	2			-	-	15.8
193144	Transcriptional regulator, ArsR family	2			-	-	10.4
44454	La domain-containing protein	2			-	-	8.5
153427	Uncharacterized HTH-type transcriptional regulator MJ0774	2			-	-	17.8
91907	DNA-directed RNA polymerase III subunit rpc3	2			-	-	6.9
52212	Lysine-specific histone demethylase 1 homolog 3	2			-	-	3.9
257900	Contains similarity to regulatory protein RecX	2			-	-	11.7
82759	Probable hydrogen peroxide-inducible genes activator	2			-	-	0.0
118502	Histone H1-beta, late embryonic	2			-	-	8.3
257899	Contains similarity to regulatory protein RecX	2			-	-	0.0
264567	Riboflavin kinase	2	EC		-	-	27.4
266589	Regulatory protein RecX	2			-	-	52.3
263521	Histone H1, gonadal	2			-	-	31.4
264684	Arginine repressor	2			-	-	26.4
256254	Regulatory protein RecX	2			-	-	0.0
265427	Regulatory protein RecX	2			-	-	28.9
206876	DNA translocase FtsK	2			-	-	19.6
197883	Arginine repressor	2			-	-	13.3
264296	Uncharacterized protein PH0614	2			-	-	22.6
135779	Transcriptional regulator, ArsR family	2			-	-	8.4
260696	Histone acetyltransferase KAT6B	2			-	-	8.6
227795	Transcription initiation factor IIF subunit alpha	2			-	-	0.0
19095	Transcription factor SFL2	2			-	-	0.0
263428	Holliday junction ATP-dependent DNA helicase RuvB	2	EC		-	-	27.1
265390	Histone H1B	2			-	-	37.1
54422	Transcriptional activator protein CzcR	2			-	-	2.2
184968	General transcription factor IIF subunit 2	2	EC		-	-	0.0
106858	Uncharacterized protein	2			-	-	0.0
264551	Riboflavin kinase	2	EC		-	-	26.9
52633	Two-component transcriptional regulatory protein DevR	2		3D	3c3wA02	-	0.0
227794	Replication protein A 28 kDa subunit	2			-	-	7.8
107739	Replication factor C small subunit	1			-	-	0.0
60571	GE23871	1			-	-
37977	Protein let-99	1			-	-	0.0
202193	DNA translocase FtsK	1			-	-	0.0
264400	Transcription factor E	1			-	-	0.0
259889	Regulatory protein RecX	1			-	-	0.0
102657	Fur family transcriptional regulator	1			-	-	0.0
197900	Mu DNA-binding domain protein	1			-	-	0.0
145933	Uncharacterized protein	1			-	-	0.0
266692	Contains similarity to regulatory protein RecX	1			-	-	0.0
253844	Cyclic nucleotide-binding protein	1			-	-	0.0
206882	COP9 signalosome complex subunit 4	1			-	-	0.0
72145	TraJ	1			-	-
180383	RNA polymerase sigma factor SigA2	1			-	-	0.0
14742	Probable replication protein rep	1			-	-	0.0
82763	Protein F-93	1			-	-	0.0
165267	Riboflavin kinase	1	EC		-	-	0.0
251394	Regulatory protein RecX	1			-	-	0.0
127200	Uncharacterized HTH-type transcriptional regulator MJ0300	1			-	-	0.0
69316	O-methyltransferase 2	1			-	-	0.0
148431	Iron Metal	1			-	-	0.0
144002	Histone H1, sperm	1			-	-	0.0
253221	Regulatory protein RecX	1			-	-	0.0
202185	Transcription initiation factor IIF subunit alpha	1			-	-	0.0
231977	Hepatocyte nuclear factor 3-beta	1			-	-	0.0
153647	Transcriptional regulatory protein LuxR family	1			-	-	0.0
7437	Putative HTH-type transcriptional regulator rrf2-like	1			-	-	0.0
13144	HTH-type transcriptional repressor NsrR	1			-	-	0.0
206883	Replication factor A protein 2	1			-	-	0.0
175416	Anaphase-promoting complex subunit 2	1			-	-	0.0
264607	FKH-4	1			-	-	0.0
254806	Regulatory protein RecX	1			-	-	0.0
256233	Regulatory protein RecX	1			-	-	0.0
256238	Regulatory protein RecX	1			-	-	0.0
1866	Transcriptional activatory protein BadR	1			-	-	0.0
150136	Probable transcriptional regulator ycf29	1			-	-	0.0
258817	Regulatory protein RecX	1			-	-	0.0
193558	Putative transcriptional regulator MtlR	1			-	-	0.0
17595	Type-2 restriction enzyme NaeI	1	EC		-	-	0.0
30080	Transcriptional regulator, LuxR family	1			-	-	0.0
148422	Segregation and condensation protein B	1			-	-	0.0
193583	Uncharacterized protein MJ1515	1			-	-	0.0
247125	Regulatory protein RecX	1			-	-	0.0
202211	Arginine repressor	1			-	-	0.0
2025	Transcriptional regulator, MarR family	1			-	-	0.0
10100	Putative HTH-type transcriptional regulator BadM	1			-	-	0.0
73326	Uncharacterized protein	1			-	-	0.0
189140	RNA polymerase sigma factor SigA3	1			-	-	0.0
29275	Response regulator GtcR	1			-	-	0.0
144032	Protein KorA	1			-	-	0.0
259887	Regulatory protein RecX	1			-	-	0.0
261405	Regulatory protein RecX	1			-	-	0.0
165298	Uncharacterized HTH-type transcriptional regulator RHOS4_30730	1			-	-	0.0
136487	Putative regulatory protein MocR	1			-	-	0.0
230338	RPA-2	1			-	-	0.0
13494	Putative uncharacterized protein	1			-	-	0.0
139845	Methionine aminopeptidase	1	EC		-	-	0.0
231379	Putative transcriptional regulator	1			-	-	0.0
32905	Probable transcriptional regulatory protein y4xI	1			-	-	0.0
265840	Nitrite reductase heme biosynthesis D/L protein, putative	1			-	-	0.0
148451	Eukaryotic translation initiation factor 3 subunit C	1			-	-	0.0
258823	Regulatory protein RecX	1			-	-	0.0
242227	Probable Werner syndrome ATP-dependent helicase homolog 1	1	EC		-	-	0.0
170430	Sperm-specific protein PL-I	1			-	-	0.0
91895	Virulence factors transcription regulator	1			-	-	0.0
82775	Malolactic fermentation system transcriptional activator	1			-	-	0.0
205117	Putative uncharacterized protein At5g23710	1			-	-	0.0
235566	Transposase for insertion sequence element	1			-	-	0.0
66401	Putative epidermin response regulator	1			-	-	0.0
83453	YNL213C-like protein	1			-	-	0.0
170402	Uxu operon regulator	1			-	-	0.0
41005	Rho-GTPase-activating protein 8	1			-	-	0.0
72159	Riboflavin kinase	1	EC		-	-	0.0
257678	Regulatory protein RecX	1			-	-	0.0
183582	ECF RNA polymerase sigma factor RpoE	1			-	-	0.0
127236	Type-2 restriction enzyme FokI	1	EC		-	-	0.0
193574	Regulatory protein RecX	1			-	-	0.0
264216	Cullin 5	1			-	-
244164	CRISPR locus-related DNA-binding protein	1			-	-	0.0
221470	Arginine repressor	1			-	-	0.0
231371	Riboflavin kinase	1	EC		-	-	0.0
48842	Transcriptional regulatory DpiA domain protein	1			-	-	0.0
113334	HTH-type transcriptional regulator BlaA	1			-	-	0.0
116916	HTH-type transcriptional regulator GalR	1			-	-	0.0
66392	Eukaryotic translation initiation factor 3 subunit K	1			-	-	0.0
262247	Regulatory protein RecX	1			-	-	0.0
254786	Regulatory protein RecX	1			-	-	0.0
202195	Putative transcriptional regulator MtlR	1			-	-	0.0
263516	Histone H1B, sperm	1			-	-	0.0
136853	IS3 element transposase	1			-	-
211044	Uncharacterized HTH-type transcriptional regulator PH0140	1			-	-	0.0
97263	Cullin-4	1			-	-	0.0
63506	30S ribosomal protein S25e	1			-	-	0.0
170421	Mu-like prophage FluMu transposase A	1			-	-	0.0
66409	Cullin-5	1			-	-	0.0
235250	HTH-type transcriptional regulator Ptr1	1			-	-	0.0
249341	Regulatory protein RecX	1			-	-	0.0
206855	Transcriptional regulator ManR	1			-	-	0.0
135759	Segregation and condensation protein B	1			-	-	0.0
197895	HTH-type transcriptional repressor PhnF	1			-	-	0.0
202218	CRISPR locus-related putative DNA-binding protein Csa3	1			-	-	0.0
263001	LuxR family transcriptional regulator	1			-	-
47749	Cyclic GMP-binding protein C	1	EC		-	-	0.0
266670	Protein CBR-CUL-2	1			-	-
84279	Zgc:113424	1			-	-	0.0
251426	KDP operon transcriptional regulatory protein kdpE	1			-	-	0.0
26681	Transcriptional regulatory protein DegU	1			-	-	0.0
211041	Selenocysteine-specific translation elongation factor	1			-	-	0.0
262905	ORC1-type DNA replication protein	1			-	-	0.0
206864	Arginine repressor	1			-	-	0.0
129719	Transcriptional regulator/arsenate reductase	1			-	-	0.0
159594	Transcriptional activator protein CarR	1			-	-	0.0
260063	Regulatory protein RecX	1			-	-	0.0
90939	Carbon monoxide oxidation system transcription regulator CooA-1	1			-	-	0.0
188383	Uncharacterized HTH-type transcriptional regulator in unstable DNA locus	1			-	-	0.0
131574	HTH-type pyridoxine biosynthesis transcriptional regulator PdxR	1			-	-	0.0
202237	RNA polymerase sigma factor RpoS	1			-	-	0.0