The name of this superfamily has been modified since the most recent official CATH+ release (v4_4_0). At the point of the last release, this superfamily was named:
"K Homology domain, type 1
".
FunFam 16: Putative splicing factor 1
Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.
There are 7 GO terms relating to "molecular function"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Transcription corepressor activity GO:0003714
A protein or a member of a complex that interacts specifically and non-covalently with a DNA-bound DNA-binding transcription factor to repress the transcription of specific genes. Corepressors often act by altering chromatin structure and modifications. For example, one class of transcription coregulators modifies chromatin structure through covalent modification of histones. A second ATP-dependent class modifies the conformation of chromatin. A third class occludes DNA-binding transcription factor protein-protein interaction domains. A fourth class of corepressors prevents interactions of DNA bound DNA-binding transcription factor with coactivators.
|
21 |
Q15637 (/TAS)
Q15637 (/TAS)
Q15637 (/TAS)
Q15637 (/TAS)
Q15637 (/TAS)
Q15637 (/TAS)
Q15637 (/TAS)
Q15637 (/TAS)
Q15637 (/TAS)
Q15637 (/TAS)
(11 more) |
RNA binding GO:0003723
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
|
21 |
Q15637 (/HDA)
Q15637 (/HDA)
Q15637 (/HDA)
Q15637 (/HDA)
Q15637 (/HDA)
Q15637 (/HDA)
Q15637 (/HDA)
Q15637 (/HDA)
Q15637 (/HDA)
Q15637 (/HDA)
(11 more) |
RNA binding GO:0003723
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
|
21 |
Q15637 (/TAS)
Q15637 (/TAS)
Q15637 (/TAS)
Q15637 (/TAS)
Q15637 (/TAS)
Q15637 (/TAS)
Q15637 (/TAS)
Q15637 (/TAS)
Q15637 (/TAS)
Q15637 (/TAS)
(11 more) |
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
|
21 |
Q15637 (/IPI)
Q15637 (/IPI)
Q15637 (/IPI)
Q15637 (/IPI)
Q15637 (/IPI)
Q15637 (/IPI)
Q15637 (/IPI)
Q15637 (/IPI)
Q15637 (/IPI)
Q15637 (/IPI)
(11 more) |
Identical protein binding GO:0042802
Interacting selectively and non-covalently with an identical protein or proteins.
|
21 |
Q15637 (/IPI)
Q15637 (/IPI)
Q15637 (/IPI)
Q15637 (/IPI)
Q15637 (/IPI)
Q15637 (/IPI)
Q15637 (/IPI)
Q15637 (/IPI)
Q15637 (/IPI)
Q15637 (/IPI)
(11 more) |
RNA binding GO:0003723
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
|
2 | Q9U1J9 (/ISS) Q9VEJ1 (/ISS) |
RNA binding GO:0003723
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
|
1 | Q64213 (/IPI) |
There are 12 GO terms relating to "biological process"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
MRNA splicing, via spliceosome GO:0000398
The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.
|
23 |
Q15637 (/IC)
Q15637 (/IC)
Q15637 (/IC)
Q15637 (/IC)
Q15637 (/IC)
Q15637 (/IC)
Q15637 (/IC)
Q15637 (/IC)
Q15637 (/IC)
Q15637 (/IC)
(13 more) |
Spliceosomal complex assembly GO:0000245
The aggregation, arrangement and bonding together of a spliceosomal complex, a ribonucleoprotein apparatus that catalyzes nuclear mRNA splicing via transesterification reactions.
|
21 |
Q15637 (/NAS)
Q15637 (/NAS)
Q15637 (/NAS)
Q15637 (/NAS)
Q15637 (/NAS)
Q15637 (/NAS)
Q15637 (/NAS)
Q15637 (/NAS)
Q15637 (/NAS)
Q15637 (/NAS)
(11 more) |
MRNA 3'-splice site recognition GO:0000389
Recognition of the intron 3'-splice site by components of the assembling U2- or U12-type spliceosome.
|
21 |
Q15637 (/TAS)
Q15637 (/TAS)
Q15637 (/TAS)
Q15637 (/TAS)
Q15637 (/TAS)
Q15637 (/TAS)
Q15637 (/TAS)
Q15637 (/TAS)
Q15637 (/TAS)
Q15637 (/TAS)
(11 more) |
MRNA splicing, via spliceosome GO:0000398
The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.
|
21 |
Q15637 (/TAS)
Q15637 (/TAS)
Q15637 (/TAS)
Q15637 (/TAS)
Q15637 (/TAS)
Q15637 (/TAS)
Q15637 (/TAS)
Q15637 (/TAS)
Q15637 (/TAS)
Q15637 (/TAS)
(11 more) |
Retina development in camera-type eye GO:0060041
The process whose specific outcome is the progression of the retina over time, from its formation to the mature structure. The retina is the innermost layer or coating at the back of the eyeball, which is sensitive to light and in which the optic nerve terminates.
|
4 | A0A0R4IBT0 (/IMP) B3DKQ7 (/IMP) F1QP64 (/IMP) Q6TNQ8 (/IMP) |
Negative regulation of smooth muscle cell proliferation GO:0048662
Any process that stops, prevents or reduces the rate or extent of smooth muscle cell proliferation.
|
3 | F1LM37 (/IMP) F1LSC3 (/IMP) F1LSC3 (/IMP) |
MRNA splicing, via spliceosome GO:0000398
The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.
|
2 | Q9U1J9 (/ISS) Q9VEJ1 (/ISS) |
Male sex determination GO:0030238
The specification of male sex of an individual organism.
|
1 | Q64213 (/IGI) |
Nuclear body organization GO:0030575
A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of any of the extra-nucleolar nuclear domains usually visualized by confocal microscopy and fluorescent antibodies to specific proteins.
|
1 | Q64213 (/IMP) |
Leydig cell differentiation GO:0033327
The process in which a relatively unspecialized cell acquires specialized structural and/or functional features of a Leydig cell. A Leydig cell is a testosterone-secreting cell in the interstitial area, between the seminiferous tubules, in the testis.
|
1 | Q64213 (/IGI) |
Negative regulation of smooth muscle cell proliferation GO:0048662
Any process that stops, prevents or reduces the rate or extent of smooth muscle cell proliferation.
|
1 | Q64213 (/ISO) |
Regulation of steroid biosynthetic process GO:0050810
Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus.
|
1 | Q64213 (/IGI) |
There are 11 GO terms relating to "cellular component"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
|
75 |
A0A024R566 (/IDA)
A0A024R566 (/IDA)
A0A024R572 (/IDA)
A0A024R572 (/IDA)
A0A024R572 (/IDA)
A0A024R572 (/IDA)
A0A024R572 (/IDA)
A0A024R572 (/IDA)
A0A024R572 (/IDA)
A0A024R572 (/IDA)
(65 more) |
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
21 |
Q15637 (/NAS)
Q15637 (/NAS)
Q15637 (/NAS)
Q15637 (/NAS)
Q15637 (/NAS)
Q15637 (/NAS)
Q15637 (/NAS)
Q15637 (/NAS)
Q15637 (/NAS)
Q15637 (/NAS)
(11 more) |
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
|
21 |
Q15637 (/TAS)
Q15637 (/TAS)
Q15637 (/TAS)
Q15637 (/TAS)
Q15637 (/TAS)
Q15637 (/TAS)
Q15637 (/TAS)
Q15637 (/TAS)
Q15637 (/TAS)
Q15637 (/TAS)
(11 more) |
Spliceosomal complex GO:0005681
Any of a series of ribonucleoprotein complexes that contain snRNA(s) and small nuclear ribonucleoproteins (snRNPs), and are formed sequentially during the spliceosomal splicing of one or more substrate RNAs, and which also contain the RNA substrate(s) from the initial target RNAs of splicing, the splicing intermediate RNA(s), to the final RNA products. During cis-splicing, the initial target RNA is a single, contiguous RNA transcript, whether mRNA, snoRNA, etc., and the released products are a spliced RNA and an excised intron, generally as a lariat structure. During trans-splicing, there are two initial substrate RNAs, the spliced leader RNA and a pre-mRNA.
|
21 |
Q15637 (/IDA)
Q15637 (/IDA)
Q15637 (/IDA)
Q15637 (/IDA)
Q15637 (/IDA)
Q15637 (/IDA)
Q15637 (/IDA)
Q15637 (/IDA)
Q15637 (/IDA)
Q15637 (/IDA)
(11 more) |
Ribosome GO:0005840
An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.
|
21 |
Q15637 (/NAS)
Q15637 (/NAS)
Q15637 (/NAS)
Q15637 (/NAS)
Q15637 (/NAS)
Q15637 (/NAS)
Q15637 (/NAS)
Q15637 (/NAS)
Q15637 (/NAS)
Q15637 (/NAS)
(11 more) |
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
2 | Q9U1J9 (/IDA) Q9VEJ1 (/IDA) |
Spliceosomal complex GO:0005681
Any of a series of ribonucleoprotein complexes that contain snRNA(s) and small nuclear ribonucleoproteins (snRNPs), and are formed sequentially during the spliceosomal splicing of one or more substrate RNAs, and which also contain the RNA substrate(s) from the initial target RNAs of splicing, the splicing intermediate RNA(s), to the final RNA products. During cis-splicing, the initial target RNA is a single, contiguous RNA transcript, whether mRNA, snoRNA, etc., and the released products are a spliced RNA and an excised intron, generally as a lariat structure. During trans-splicing, there are two initial substrate RNAs, the spliced leader RNA and a pre-mRNA.
|
2 | Q9U1J9 (/ISS) Q9VEJ1 (/ISS) |
Precatalytic spliceosome GO:0071011
A spliceosomal complex that is formed by the recruitment of a preassembled U5-containing tri-snRNP to the prespliceosome. Although all 5 snRNPs are present, the precatalytic spliceosome is catalytically inactive. The precatalytic spliceosome includes many proteins in addition to those found in the associated snRNPs.
|
2 | Q9U1J9 (/HDA) Q9VEJ1 (/HDA) |
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
1 | Q64213 (/ISS) |
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
|
1 | Q64213 (/ISS) |
Nuclear body GO:0016604
Extra-nucleolar nuclear domains usually visualized by confocal microscopy and fluorescent antibodies to specific proteins.
|
1 | Q64213 (/IDA) |