CATH Superfamily 3.30.1370.10

Browse Functional Families

ID	Function Family (FunFam) Name	Total Sequences	Structure?	Structural Representative	PDB Sites?	Alignment Diversity (0-100)
1	Polyribonucleotide nucleotidyltransferase	1495	3D	4nbqC04	-	99.6
2	poly RC	1175	3D	2jzxA02	-	74.1
3	poly RC	1127	3D	2py9D00	-	92.6
4	Fragile X mental retardation 1, isoform CRA_e	1017	3D	2qndB01	-	89.0
5	poly RC	974	3D	2p2rA00	-	88.3
6	Ribonuclease Y	839		-	-	72.4
7	far upstream element-binding protein 1 isoform X1	837	3D	2hh2A00	-	93.5
8	far upstream element-binding protein 1 isoform X1	655	3D	4b8tA00	-	74.4
9	RNA-binding protein PNO1	643		-	-	94.1
10	far upstream element-binding protein 1 isoform X1	599	3D	2opuA00	-	74.1
11	KRR1 small subunit processome component	551	3D	4qmfD02	-	91.1
12	Mex-3 RNA-binding family member D	542	3D	5wwwA01	-	80.3
13	Mex-3 RNA-binding family member B	537	3D	5wwzC01	-	59.7
14	KRR1 small subunit processome component	522	3D	4qmfD01	-	95.9
15	Far upstream element-binding protein 1 isoform X1	504	3D	1x4mA01	-	33.9
16	Putative splicing factor 1	438	3D	1k1gA00	-	81.3
17	Fragile X mental retardation syndrome-related protein 1	433		-	-	70.5
18	vigilin isoform X1	432	3D	2ctjA00	-	92.9
19	RNA-binding protein Nova-1 isoform 1	424	3D	1dt4A00	-	75.0
20	RNA-binding protein Nova-1 isoform 1	417	3D	2anrA01	-	53.6
21	Heterogeneous nuclear ribonucleoprotein K, like	414		-	-	71.7
22	RNA-binding protein Nova-1 isoform 1	407	3D	2anrA02	-	78.6
25	Heterogeneous nuclear ribonucleoprotein K, like	387	3D	1zzkA00	-	77.5
23	Heterogeneous nuclear ribonucleoprotein K, like	384		-	-	88.1
24	Branchpoint-bridging protein-like protein	384	3D	4wanG00	-	82.3
26	Insulin-like growth factor 2 mRNA-binding protein 3	375		-	-	75.3
28	protein quaking isoform X2	374	3D	4jvyB00	-	67.3
27	insulin-like growth factor 2 mRNA-binding protein 3 isoform X1	373		-	-	73.0
29	ankyrin repeat and KH domain-containing protein 1 isoform X2	259		-	-	35.0
30	KH domain-containing, RNA-binding, signal transduction-associated protein 3 isoformX2	258		-	-	67.1
31	ankyrin repeat domain-containing protein 17 isoform X1	247		-	-	44.4
32	synaptic functional regulator FMR1 isoform X2	235		-	-	36.9
33	vigilin isoform X1	234	3D	2cteA01	-	70.7
34	synaptic functional regulator FMR1 isoform X2	231		-	-	59.3
35	KH domain-containing 4, pre-mRNA-splicing factor	169	3D	2yqrA01	-	73.6
36	KH RNA binding domain containing, signal transduction associated 1	167		-	-	77.2
37	KH domain protein	167		-	-	93.7
38	exosome complex component RRP40	166	3D	6d6rG03	-	95.6
39	vigilin isoform X1	165	3D	1vihA00	-	92.9
40	KH domain-containing protein At2g38610	158		-	-	73.2
41	vigilin isoform X1	157	3D	2ctkA00	-	63.6
44	Polyribonucleotide nucleotidyltransferase 1, mitochondrial	157	3D	3u1kD04	-	97.9
42	Vigilin isoform X1	155	3D	2ctfA00	-	57.0
43	KH domain-containing protein	153		-	-	74.9
45	KH domain-containing 4, pre-mRNA-splicing factor	135		-	-	38.8
46	High density lipoprotein binding protein	133		-	-	67.7
47	splicing factor-like protein 1	130		-	-	75.0
49	far upstream element-binding protein 2	126	3D	2opvA00	-	24.9
48	RNA-binding protein PNO1 isoform X2	125		-	-	80.5
50	vigilin isoform X1	123	3D	2ctlA00	-	71.3
51	Putative kh domain-containing protein	117		-	-	77.4
52	Kep1, isoform A	117		-	-	88.7
55	protein quaking isoform X1	115	3D	4jvhA00	-	73.4
53	Fragile X mental retardation syndrome-related protein 1	115		-	-	63.7
54	Fragile X mental retardation protein 1	113		-	-	92.4
56	Tudor and KH domain containing	111		-	-	64.9
57	High density lipoprotein binding protein	111		-	-	77.7
58	poly RC	110		-	-	12.5
59	Tudor and KH domain containing, isoform CRA_a	108	3D	1we8A01	-	38.4
60	Far upstream element binding protein 3	101		-	-	44.8
61	High density lipoprotein binding protein	95		-	-	67.9
62	vigilin isoform X1	95	3D	2ctmA00	-	60.6
63	A-kinase anchor protein 1, mitochondrial	82		-	-	17.8
64	protein bicaudal C homolog 1 isoform X1	82		-	-	19.7
65	KH domain-containing protein	67		-	-	65.8
66	KH domain containing 4, pre-mRNA splicing factor	60		-	-	89.7
67	High density lipoprotein binding protein	60		-	-	70.8
68	IGF-II mRNA-binding protein, isoform D	54		-	-	35.6
69	Zinc finger CCCH domain-containing protein 52	54		-	-	73.4
70	Uncharacterized protein	50		-	-	52.6
71	KH domain containing 1 like	44		-	-	70.5
74	Small subunit rRNA processing KH domain protein, putative	41		-	-	19.0
72	Uncharacterized protein, isoform A	41		-	-	70.7
73	Transcription or splicing factor-like protein	41		-	-	18.5
76	KH domain protein	39	3D	3aevB02	-	94.8
75	KRR1 small subunit processome component	37		-	-	21.1
77	vigilin isoform X2	36		-	-	36.8
78	Uncharacterized protein, isoform A	33		-	-	10.8
79	developmental pluripotency-associated 5 protein-like	30		-	-	77.2
80	RNA binding protein	29		-	-	13.8
81	RNA binding protein	29		-	-	18.0
82	RNA-binding protein PNO1	27		-	-	28.2
83	DEAD Asp-Glu-Ala-Asp	26		-	-	95.4
84	KH domain-containing, RNA-binding, signal transduction-associated protein 1 isoform X3	25		-	-	9.0
85	KH domain-containing, RNA-binding, signal transduction-associated protein 1 isoform X3	24		-	-	0.0
86	Oocyte-expressed protein homolog	22		-	-	61.1
87	KH domain containing 3 like, subcortical maternal complex member	21		-	-	16.4
114	Exosome complex component RRP40	21	3D	5vzjG03	-	15.2
88	Uncharacterized protein, isoform A	21		-	-	33.0
89	BnaC09g50550D protein	19		-	-	10.9
90	KRR1 small subunit processome component	19		-	-	25.3
91	Putative exosome complex exonuclease Rrp40	18		-	-	85.2
92	PRE-binding protein	18		-	-	11.5
95	Exosome complex component Rrp4	18	3D	4ba2I03	-	85.7
93	KH domain-containing protein	17		-	-	78.2
94	Exosome complex component RRP40, putative	16		-	-	1.4
96	KH domain-containing protein	15		-	-	17.3
97	Splicing factor-like protein 1 isoform A	15		-	-	74.9
99	Pbp2p	14		-	-	18.0
100	Putative branch point binding protein	14		-	-	36.2
98	Pbp2p	14		-	-	16.2
105	Protein CBG12765	13		-	-	90.8
102	Cleavage and polyadenylation specificity factor subunit 4	13		-	-	19.0
103	Pbp2p	13		-	-	11.0
101	Activating signal cointegrator 1 complex subunit 1	13		-	-	56.5
104	Uncharacterized protein	13		-	-	0.0
111	Uncharacterized protein, isoform A	12		-	-	12.7
119	KH type 1 domain protein	12	3D	3aevB01	-	82.8
110	Uncharacterized protein, isoform A	12		-	-	15.6
108	DEAD box polypeptide 43 Predicted	12		-	-	22.9
109	Heterogeneous nuclear rnp K-like protein 2	12		-	-	5.2
106	Scp160p	12		-	-	27.9
107	Scp160p	12		-	-	12.4
112	Scp160p	11		-	-	15.8
113	P-element somatic inhibitor, isoform A	11		-	-	6.0
118	Heterogeneous nuclear rnp K-like protein 2	10		-	-	4.6
116	RNA-binding KH domain-containing protein	10		-	-	21.4
117	Poly rC	10		-	-	6.0
120	Uncharacterized protein, isoform D	10		-	-	8.2
121	Meiotic recombination 1 protein	10		-	-	0.0
115	Scp160p	10		-	-	20.7
122	Scp160p	10		-	-	60.2
123	KH domain-containing, RNA-binding, signal transduction-associated protein 3 isoform X5	10		-	-	24.0
128	Heterogeneous nuclear ribonucleoprotein K, isoform B	9		-	-	16.5
129	Pre-rRNA-processing protein PNO1	9		-	-	10.2
124	Scp160p	9		-	-	4.1
125	Scp160p	9		-	-	21.0
126	Protein CBR-SFA-1	9		-	-	32.3
127	RNA-binding KH domain-containing protein	9		-	-	45.0
130	YLL032C-like protein	9		-	-	15.7
132	RNA-binding protein, putative	8		-	-	2.2
131	Exosome complex exonuclease RRP40	8		-	-	40.3
133	Uncharacterized protein, isoform A	8		-	-	23.5
134	Uncharacterized protein, isoform B	7		-	-	11.4
136	RNA-binding protein, putative	7		-	-	5.9
137	KRR1 small subunit processome component	7		-	-	41.7
135	RE73736p	7		-	-	14.9
138	KH type 1 domain protein	7		-	-	13.9
142	AGAP004145-PA	6		-	-	10.5
139	Exosome complex exonuclease RRP40, putative	6		-	-	5.6
141	KRR1 small subunit processome component	6		-	-	1.4
144	Drosophila dodeca-satellite protein 1	6		-	-	18.0
143	Partner of Nob1	6		-	-	1.3
140	RNA-binding KH domain-containing protein	6		-	-	12.2
149	Uncharacterized protein	5		-	-	7.5
148	Protein CBG01583	5		-	-	80.4
147	FUBP1 isoform 1	5		-	-	31.1
145	KH domain-containing protein	5		-	-	15.0
146	Heterogeneous nuclear rnp K-like protein 2	5		-	-	8.6
151	Protein CBG06045	5		-	-	72.5
150	Drosophila dodeca-satellite protein 1	5		-	-	7.2
158	Drosophila dodeca-satellite protein 1	4		-	-	4.7
157	KH homology domain-containing protein 1C	4		-	-	30.2
156	RNA-binding protein	4		-	-	12.1
153	KH domain containing protein, putative	4		-	-	2.9
155	RNA-binding KH domain-containing protein	4		-	-	6.2
154	RNA-binding KH domain-containing protein	4		-	-	11.1
152	Vigilin 1	4		-	-	80.4
197	KH domain-containing protein 3	4	3D	3v69B00	-	1.0
165	Far upstream element FUSE	3		-	-	0.0
163	KH domain-containing, RNA-binding, signal transduction-associated protein 3	3		-	-	33.8
166	Vigilin 1	3		-	-	48.0
161	RNA-binding protein rnc1	3		-	-	1.5
164	Protein CBG07980	3		-	-	12.4
160	Branchpoint-bridging protein, putative	3		-	-	1.9
159	Putative eukaryotic LigT	3		-	-	3.4
162	KRR1 small subunit processome component	3		-	-	7.6
191	Protein CBG10565	2		-	-	4.3
170	Vigilin 1	2		-	-	44.3
184	KH homology domain-containing protein 4-like	2		-	-	0.0
181	Tudor and KH domain-containing protein homolog	2		-	-	2.4
168	Exosome non-catalytic core subunit	2		-	-	0.0
178	DDX53 isoform 1	2		-	-	0.0
192	KH domain-containing protein	2		-	-	0.0
183	YALI0C05324p	2		-	-	0.0
179	Uncharacterized protein	2		-	-	0.0
193	High density lipoprotein-binding protein a	2		-	-	0.0
177	Hydrolase	2		-	-	0.0
186	KH homology domain-containing protein 4-like	2		-	-	0.0
196	LOC553525 protein	2		-	-	58.7
194	Predicted protein	2		-	-	34.1
171	Exosomal 3'-5' exoribonuclease complex subunit, putative	2		-	-	16.4
176	Uncharacterized protein	2		-	-	0.0
185	KRR1 small subunit processome component	2		-	-	0.0
180	Uncharacterized protein	2		-	-	0.0
187	YALI0C05324p	2		-	-	0.0
175	Tudor and KH domain-containing protein homolog	2		-	-	8.8
195	Predicted protein	2		-	-	38.1
174	Zinc finger CCCH domain-containing protein 52	2		-	-	0.0
188	Protein CBG16603	2		-	-	26.2
189	Putative UPF0469 protein	2		-	-	8.9
182	KH domain containing 4, pre-mRNA splicing factor	2		-	-	1.4
167	Exosome complex component Rrp4	2		-	-	0.0
173	Tudor and KH domain-containing protein homolog	2		-	-	12.0
169	Protein CBR-NUO-2	2		-	-	46.8
190	KH domain-containing, RNA-binding, signal transduction-associated protein 3	2		-	-	0.6
172	Uncharacterized protein	2		-	-	0.0
232	Predicted protein	1		-	-	0.0
225	Uncharacterized protein	1		-	-	0.0
207	Uncharacterized protein	1		-	-	0.0
222	Uncharacterized protein	1		-	-	0.0
217	Uncharacterized protein	1		-	-	0.0
209	KRR1 small subunit processome component homolog-like protein	1		-	-	0.0
224	Predicted protein	1		-	-	0.0
233	U1 snRNP-associated protein usp108	1		-	-	0.0
199	Uncharacterized protein	1		-	-	0.0
204	Vigilin 1	1		-	-	0.0
248	Hdlbp protein	1		-	-	0.0
236	Uncharacterized protein	1		-	-	0.0
234	Uncharacterized protein	1		-	-	0.0
205	Uncharacterized protein	1		-	-	0.0
227	Far upstream element-binding protein 2	1		-	-	0.0
214	Uncharacterized protein	1		-	-	0.0
226	Uncharacterized protein	1		-	-	0.0
244	Uncharacterized protein	1		-	-	0.0
237	Uncharacterized protein	1		-	-	0.0
235	Uncharacterized protein	1		-	-	0.0
215	ATP-dependent RNA helicase p62-like Protein	1		-	-	0.0
246	LD38872p	1		-	-	0.0
212	Predicted protein	1		-	-	0.0
198	Synaptic functional regulator FMR1	1		-	-	0.0
202	Vigilin 1	1		-	-	0.0
229	KH domain containing protein	1		-	-	0.0
247	EG:EG0003.2 protein Fbgn0014870;psi protein	1		-	-	0.0
210	Polyribonucleotide nucleotidyltransferase, putative	1		-	-	0.0
242	Predicted protein	1		-	-	0.0
213	AGAP004351-PA	1		-	-	0.0
200	Vigilin 1	1		-	-	0.0
243	Uncharacterized protein	1		-	-	0.0
203	Uncharacterized protein	1		-	-	0.0
228	KRR1 small subunit processome component	1		-	-	0.0
238	Uncharacterized protein	1		-	-	0.0
211	Uncharacterized protein	1		-	-	0.0
218	Vigilin 1	1		-	-	0.0
221	Uncharacterized protein	1		-	-	0.0
240	Heterogeneous nuclear RibonucleoProtein HnRNP	1		-	-	0.0
230	KH domain containing protein	1		-	-	0.0
239	Uncharacterized protein	1		-	-	0.0
219	RNA-binding protein rnc1	1		-	-	0.0
206	Uncharacterized protein	1		-	-	0.0
220	LD29992p	1		-	-	0.0
245	Predicted protein	1		-	-	0.0
208	KRR1 small subunit processome component homolog-like protein	1		-	-	0.0
241	Uncharacterized protein	1		-	-	0.0
201	Protein CBR-NUO-2	1		-	-	0.0
231	Uncharacterized protein	1		-	-	0.0
223	KRR1 small subunit processome component	1		-	-	0.0
216	Vigilin 1	1		-	-	0.0