CATH Superfamily 2.30.30.100
The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was: waiting to be named.
FunFam 94: U6 snRNA-associated Sm-like protein LSm7p
Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.
There are 0 GO terms relating to "molecular function"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
There are 5 GO terms relating to "biological process"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
| GO Term | Annotations | Evidence |
|---|---|---|
|
MRNA trans splicing, via spliceosome GO:0000365
The joining together of exons from two different primary transcripts of messenger RNA (mRNA) via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.
|
10 | D6XGY7 (/IPI) D6XGY7 (/IPI) D6XGY7 (/IPI) D6XGY7 (/IPI) D6XGY7 (/IPI) Q6QA15 (/IPI) Q6QA15 (/IPI) Q6QA15 (/IPI) Q6QA15 (/IPI) Q6QA15 (/IPI) |
|
MRNA splicing, via spliceosome GO:0000398
The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.
|
10 | D6XGY7 (/ISM) D6XGY7 (/ISM) D6XGY7 (/ISM) D6XGY7 (/ISM) D6XGY7 (/ISM) Q6QA15 (/ISM) Q6QA15 (/ISM) Q6QA15 (/ISM) Q6QA15 (/ISM) Q6QA15 (/ISM) |
|
Deadenylation-dependent decapping of nuclear-transcribed mRNA GO:0000290
Cleavage of the 5'-cap of a nuclear mRNA triggered by shortening of the poly(A) tail to below a minimum functional length.
|
1 | Q4Q9J1 (/IDA) |
|
RNA splicing GO:0008380
The process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA.
|
1 | Q4Q9J1 (/IDA) |
|
RNA metabolic process GO:0016070
The cellular chemical reactions and pathways involving RNA, ribonucleic acid, one of the two main type of nucleic acid, consisting of a long, unbranched macromolecule formed from ribonucleotides joined in 3',5'-phosphodiester linkage.
|
1 | Q4Q9J1 (/IDA) |
There are 3 GO terms relating to "cellular component"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
| GO Term | Annotations | Evidence |
|---|---|---|
|
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
10 | D6XGY7 (/IPI) D6XGY7 (/IPI) D6XGY7 (/IPI) D6XGY7 (/IPI) D6XGY7 (/IPI) Q6QA15 (/IPI) Q6QA15 (/IPI) Q6QA15 (/IPI) Q6QA15 (/IPI) Q6QA15 (/IPI) |
|
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
10 | D6XGY7 (/ISM) D6XGY7 (/ISM) D6XGY7 (/ISM) D6XGY7 (/ISM) D6XGY7 (/ISM) Q6QA15 (/ISM) Q6QA15 (/ISM) Q6QA15 (/ISM) Q6QA15 (/ISM) Q6QA15 (/ISM) |
|
P-body GO:0000932
A focus in the cytoplasm where mRNAs may become inactivated by decapping or some other mechanism. Protein and RNA localized to these foci are involved in mRNA degradation, nonsense-mediated mRNA decay (NMD), translational repression, and RNA-mediated gene silencing.
|
1 | Q4Q9J1 (/IDA) |
