CATH Superfamily 2.30.30.100

Browse Functional Families

ID	Function Family (FunFam) Name	Total Sequences	Structure?	Structural Representative	PDB Sites?	Alignment Diversity (0-100)
1	RNA-binding protein Hfq	1660	3D	4v2sF00	-	86.8
2	Small nuclear ribonucleoprotein Sm D3	1024	3D	6id1h00	-	94.2
3	U6 snRNA-associated Sm-like protein LSm5	645		-	-	90.9
4	Small nuclear ribonucleoprotein-associated proteins	505	3D	4pjop00	-	94.7
5	U6 snRNA-associated Sm-like protein LSm4	453		-	-	75.2
6	Protein LSM14 homolog A isoform b	443	3D	6f9wA00	-	76.9
9	U6 snRNA-associated Sm-like protein LSm2	440	3D	6asoB00	-	88.3
7	U6 snRNA-associated Sm-like protein LSm3	429		-	-	93.1
8	Small nuclear ribonucleoprotein Sm D1	422		-	-	90.3
10	U6 snRNA-associated Sm-like protein LSm6	370		-	-	76.9
12	RNA-binding protein Hfq	366	3D	4y91L00	-	79.1
11	small nuclear ribonucleoprotein F	364		-	-	86.9
16	Small nuclear ribonucleoprotein Sm D1	347	3D	6id1j00	-	67.5
13	Small nuclear ribonucleoprotein E	323		-	-	96.2
17	Small nuclear ribonucleoprotein G	321	3D	6id1n00	-	94.9
15	Small nuclear ribonucleoprotein Sm D2	308	3D	6id1k00	-	81.1
14	Small nuclear ribonucleoprotein Sm D1	305		-	-	86.6
18	Small nuclear ribonucleoprotein Sm D2	290	3D	3jb9l00	-	86.9
19	Small nuclear ribonucleoprotein G	255	3D	3jb9o00	-	72.1
20	Small nuclear ribonucleoprotein Sm D2	249		-	-	85.5
23	Small nuclear ribonucleoprotein G	200	3D	6j6qx00	-	93.5
21	U6 snRNA-associated Sm-like protein LSm1	194		-	-	85.2
22	U6 snRNA-associated Sm-like protein LSm8	177		-	-	83.9
24	U6 snRNA-associated Sm-like protein LSm4	159		-	-	81.9
25	U6 snRNA-associated Sm-like protein LSm7	151		-	-	76.5
26	Enhancer of mRNA-decapping protein 3	136	3D	2vc8A00	-	92.8
27	U6 snRNA-associated Sm-like protein LSm8	127		-	-	94.7
30	Bifunctional ligase/repressor BirA	116	3D	4wf2A03	-	66.0
28	N-alpha-acetyltransferase 38, NatC auxiliary subunit	115		-	-	75.5
29	U6 snRNA-associated Sm-like protein LSm1	110		-	-	88.3
31	Small nuclear ribonucleoprotein E	99	3D	3jb9m00	-	74.9
33	Trailer hitch, isoform C	95	3D	2vxeA00	-	77.7
32	U7 snRNA-associated Sm-like protein LSm11	94		-	-	52.1
37	U6 snRNA-associated Sm-like protein LSm6	90	3D	5zwox00	-	92.3
34	sm-like protein LSM7	87		-	-	71.8
35	U6 snRNA-associated Sm-like protein LSm8	84		-	-	57.3
36	U6 snRNA-associated Sm-like protein LSm3	80		-	-	77.6
59	Small nuclear ribonucleoprotein E	72	3D	6id1l00	-	33.3
38	Gem-associated protein 6	66	3D	1y96C00	-	94.3
40	Gem-associated protein 7	61	3D	1y96D00	-	47.8
39	U7 snRNA-associated Sm-like protein LSm10	60		-	-	28.2
41	U6 snRNA-associated Sm-like protein LSm5	59		-	-	67.7
70	Small nuclear ribonucleoprotein F	59	3D	6j6qw00	-	81.3
42	U6 snRNA-associated Sm-like protein LSm2	58		-	-	30.9
69	Small nuclear ribonucleoprotein Sm D2	53	3D	5xjuB00	-	29.6
43	U6 snRNA-associated Sm-like protein LSm7	53		-	-	81.7
44	Probable U6 snRNA-associated Sm-like protein LSm6	52	3D	4emkB00	-	83.9
50	Small nuclear ribonucleoprotein Sm D1	50	3D	5wsgm00	-	82.4
45	U6 snRNA-associated Sm-like protein LSm1	49	3D	4m75H00	-	86.3
92	Small nuclear ribonucleoprotein E	48	3D	6j6qu00	-	31.0
72	RNA-binding protein Hfq	47	3D	1kq2M00	-	1.6
46	RNA-binding protein Hfq	42		-	-	13.7
63	U6 snRNA-associated Sm-like protein LSm3	40	3D	6asoC00	-	64.8
103	Bifunctional protein BirA: biotin operon repressor + biotin--[acetyl-CoA-carboxylase] synthetase	38	3D	4xu3B02	-	2.6
67	U6 snRNA-associated Sm-like protein LSm5	38	3D	3swnS00	-	83.0
47	Small nuclear ribonucleoprotein SmB, putative	38		-	-	89.0
48	U6 snRNA-associated Sm-like protein LSm4	37		-	-	47.1
49	Small nuclear ribonucleoprotein-associated protein B	36		-	-	77.4
51	RNA-binding protein Hfq	35		-	-	15.3
64	U6 snRNA-associated Sm-like protein LSm4	34	3D	6asoD00	-	77.4
52	Small nuclear ribonucleoprotein Sm D2	32		-	-	14.3
53	U6 snRNA-associated Sm-like protein LSm2	32		-	-	80.3
55	Probable small nuclear ribonucleoprotein F	29		-	-	62.5
54	Polyadenylate-binding protein-interacting protein 3	29		-	-	52.9
56	Small nuclear ribonucleoprotein E	27		-	-	53.5
57	LSM1 homolog, mRNA degradation associated	24		-	-	7.5
58	Small nuclear ribonucleoprotein Sm D3	22		-	-	89.9
61	Small nuclear ribonucleoprotein G	19		-	-	13.1
60	LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated	19		-	-	56.8
98	U6 snRNA-associated Sm-like protein LSm7	19	3D	6asoG00	-	78.8
62	Probable U6 snRNA-associated Sm-like protein LSm7	18		-	-	77.4
65	Small nuclear ribonucleoprotein E	17		-	-	16.0
66	Bifunctional ligase/repressor BirA	17		-	-	12.5
68	Small nuclear ribonucleoprotein Sm D1	16		-	-	38.9
71	U6 snRNA-associated Sm-like protein LSm1	15		-	-	7.5
74	LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated	15		-	-	0.0
75	Small nuclear ribonucleoprotein Sm D2	15		-	-	75.5
73	LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated	15		-	-	0.0
78	Small nuclear ribonucleoprotein E	14		-	-	0.0
80	Small nuclear ribonucleoprotein Sm-F, putative	14		-	-	83.9
76	small Nuclear ribonucleoprotein F, Putative	14		-	-	21.0
77	Scd6p	14		-	-	4.5
79	Sm B	14		-	-	77.9
82	U6 snRNA-associated Sm-like protein LSm3	13		-	-	4.1
81	U6 snRNA-associated Sm-like protein LSm8p	13		-	-	67.4
83	Small nuclear ribonucleoprotein E	13		-	-	67.2
91	Enhancer of mRNA-decapping protein 3	12	3D	2rm4A01	-	7.5
84	U6 snRNA-associated Sm-like protein LSm8	12		-	-	74.1
85	Small nuclear ribonucleoprotein F	12		-	-	9.5
86	SNRPF isoform 1	12		-	-	10.0
89	U6 snRNA-associated Sm-like protein LSm7, putative	11		-	-	0.0
90	SnRNP Sm-like protein	11		-	-	17.4
87	U6 snRNA-associated Sm-like protein LSm4	11		-	-	39.0
88	Small nuclear ribonucleoprotein Sm-G	11		-	-	72.8
93	U6 snRNA-associated Sm-like protein LSm4	10		-	-	34.8
94	U6 snRNA-associated Sm-like protein LSm7p	10		-	-	36.9
95	U6 snRNA-associated Sm-like protein LSm8	10		-	-	70.2
97	U6 snRNA-associated Sm-like protein LSm8	10	3D	5vsuH00	-	3.0
96	Small nuclear ribonucleoprotein G	9		-	-	74.9
99	Small nuclear ribonucleoprotein G	8		-	-	40.3
102	N-alpha-acetyltransferase 38, NatC auxiliary subunit	8		-	-	0.0
100	Small nuclear ribonucleoprotein D1	8		-	-	19.0
101	AGAP007326-PB	8		-	-	45.8
105	Lsm10	7		-	-	13.7
106	Gem nuclear organelle associated protein 6	7		-	-	37.5
104	Small nuclear ribonucleoprotein Sm D2	7		-	-	0.0
112	U6 snRNA-associated Sm family protein LSm2, putative	6		-	-	0.0
111	U6 snrnaassociated Sm family LSm3 protein	6		-	-	1.6
113	Lsm7 u6 small nuclear rna associated	6		-	-	8.0
110	Small nuclear ribonucleoprotein E	6		-	-	14.8
133	Small nuclear ribonucleoprotein F	6	3D	3jb9n00	-	71.8
108	Small nuclear ribonucleoprotein E	6		-	-	0.0
109	U6 snRNA-associated Sm-like protein LSm5	6		-	-	1.5
107	Small nuclear ribonucleoprotein G	6		-	-	50.1
119	LSM domain containing protein, putative	5		-	-	8.3
118	Probable small nuclear ribonucleoprotein F	5		-	-	3.2
116	Small nuclear ribonucleoprotein Sm D1	5		-	-	17.1
117	U6 snRNA-associated Sm-like protein LSm5p	5		-	-	0.0
120	U7 snRNA-associated Sm protein LSm11	5		-	-	9.8
121	Small nuclear ribonucleoprotein F	5		-	-	5.6
115	Yeast Enhancer of DeCapping homolog	5		-	-	59.5
122	U7 snRNA-associated Sm-like protein LSm11	5		-	-	82.2
114	Small nuclear ribonucleoprotein G	5		-	-	26.1
123	U6 snRNA-associated Sm-like protein LSm3, putative	5		-	-	85.9
128	U6 snRNA-associated Sm-like protein LSm3p	4		-	-	0.0
132	Putative small nuclear ribonucleoprotein G	4		-	-	4.0
139	Sm snRNP core protein Smb1	4	3D	3jb9b00	-	5.2
129	U6 snRNA-associated Sm-like protein LSm4	4		-	-	5.3
124	Small nuclear ribonucleoprotein Sm D2	4		-	-	45.9
131	RNA-binding protein Hfq	4		-	-	8.0
125	Uncharacterized protein	4		-	-	58.9
126	Uncharacterized protein	4		-	-	0.0
127	Scd6-like Sm domain containing protein, putative	4		-	-	0.0
130	LSM domain containing protein, putative	4		-	-	4.5
142	Small nuclear ribonucleoprotein F, putative	3		-	-	12.8
149	Small nuclear ribonucleoprotein f, putative	3		-	-	12.7
148	Small nuclear ribonucleoprotein B, putative	3		-	-	6.6
141	Probable U6 snRNA-associated Sm-like protein LSm4	3		-	-	9.0
144	U6 snRNA-associated Sm-like protein LSm6	3		-	-	10.8
143	Ssm4 protein, putative	3		-	-	0.0
134	Probable U6 snRNA-associated Sm-like protein LSm2	3		-	-	17.7
136	YALI0D14102p	3		-	-	0.0
137	U6 snRNA-associated Sm-like protein LSm2	3		-	-	6.1
147	Probable U6 snRNA-associated Sm-like protein LSm5	3		-	-	10.4
135	Protein CBG17705	3		-	-	37.0
145	SnRNP Sm-like protein, putative	3		-	-	7.9
152	Gem nuclear organelle associated protein 6	3		-	-	68.3
146	SnRNP Sm-like protein, putative	3		-	-	7.9
151	U6 snRNA-associated Sm-like protein LSm7	3		-	-	20.8
138	Small nuclear ribonucleoprotein LSM7	3		-	-	0.0
140	Probable U6 snRNA-associated Sm-like protein LSm4	3		-	-	13.5
150	AGAP003131-PA	3		-	-	5.2
191	U6 snRNA-associated Sm-like protein LSm5	2		-	-	13.1
170	U6 snRNA-associated Sm-like protein LSm2	2		-	-	5.1
184	U6 snRNA-associated Sm-like protein LSm6p	2		-	-	0.0
181	Gem-associated protein 6	2		-	-	0.0
158	LSM11, U7 small nuclear RNA associated	2		-	-	15.3
165	U6 snRNA-associated Sm-like protein LSm2, putative	2		-	-	0.0
168	Protein CBG22276	2		-	-	9.6
178	YALI0F30426p	2		-	-	0.0
192	Uncharacterized protein	2		-	-	0.0
183	Probable small nuclear ribonucleoprotein G	2		-	-	11.6
157	Small nuclear ribonucleoprotein E	2		-	-	21.4
179	Uncharacterized protein	2		-	-	0.0
193	Uncharacterized protein	2		-	-	0.0
177	Small nuclear ribonucleoprotein E	2		-	-	12.9
163	Small nuclear ribonucleoprotein Sm D2	2		-	-	8.2
186	Small nuclear ribonucleoprotein Lsm8, putative AFU_orthologue AFUA_1G11670	2		-	-	0.0
156	Small nuclear ribonucleoprotein Sm D2	2		-	-	28.0
196	enhancer of mRNA-decapping protein 3-like	2		-	-	0.0
194	Bifunctional ligase/repressor BirA	2		-	-	0.0
171	U6 snRNA-associated Sm-like protein LSm3	2		-	-	0.0
176	U6 snRNA-associated Sm-like protein LSm3	2		-	-	9.8
166	SnRNP Sm related protein	2		-	-	1.3
185	Sm protein	2		-	-	4.2
153	Small nuclear ribonucleoprotein F	2		-	-	16.0
180	Uncharacterized protein	2		-	-	1.5
187	Small nuclear ribonucleoprotein F	2		-	-	4.3
155	Small nuclear ribonucleoprotein family protein	2		-	-	9.2
175	Small nuclear ribonucleoprotein E	2		-	-	0.0
154	U6 snRNA-associated Sm-like protein LSm3	2		-	-	21.3
161	Small nuclear ribonucleoprotein G	2		-	-	18.2
195	YALI0B14773p	2		-	-	0.0
174	U2 small nuclear ribonucleoprotein 16.5K	2		-	-	0.0
188	Sm-like protein LSM3B isoform A	2		-	-	0.0
164	U6 snRNA-associated Sm-like protein LSm1	2		-	-	0.0
160	Protein CBR-LSM-3	2		-	-	41.2
189	SnRNP core Sm protein Sm-X5-like protein	2		-	-	10.1
182	Like-Sm ribonucleoprotein core	2		-	-	0.0
167	Predicted protein	2		-	-	0.0
173	Small nuclear ribonucleoprotein LSM1 AFU_orthologue AFUA_2G11800	2		-	-	0.0
159	U6 snRNA-associated Sm-like protein LSm3	2		-	-	24.6
162	Small nuclear ribonucleoprotein-associated protein, putative	2		-	-	2.5
169	LSM domain containing protein	2		-	-	0.0
190	Small nuclear ribonucleoprotein E	2		-	-	10.5
172	U6 snRNA-associated Sm-like protein LSm3	2		-	-	0.0
232	Sm-like protein LSM6A	1		-	-	0.0
225	Small nuclear ribonucleoprotein E	1		-	-	0.0
207	Uncharacterized protein	1		-	-	0.0
222	U6 snRNA-associated Sm-like protein LSm4	1		-	-	0.0
217	Uncharacterized protein	1		-	-	0.0
209	Small nuclear ribonucleoprotein Sm D2	1		-	-	0.0
224	U6 snRNA-associated Sm-like protein LSm2	1		-	-	0.0
233	Uncharacterized protein	1		-	-	0.0
199	Uncharacterized protein	1		-	-	0.0
204	Probable U6 snRNA-associated Sm-like protein LSm3	1		-	-	0.0
236	Bifunctional ligase/repressor BirA	1		-	-	0.0
234	Sm-like protein LSM6A	1		-	-	0.0
205	Small nuclear ribonucleoprotein E	1		-	-	0.0
227	SnRNP core Sm protein Sm-X5-like protein	1		-	-	0.0
214	U6 snRNA-associated Sm-like protein LSm3	1		-	-	0.0
226	Uncharacterized protein	1		-	-	0.0
237	Enhancer of mRNA-decapping protein 3	1		-	-	0.0
235	U6 snRNA-associated Sm-like protein LSm1	1		-	-	0.0
215	RNA-binding protein Hfq	1		-	-	0.0
212	U7 snRNA-associated Sm-like protein LSm11	1		-	-	0.0
198	Uncharacterized protein	1		-	-	0.0
202	Uncharacterized protein	1		-	-	0.0
229	Small nuclear ribonucleoprotein Sm D2	1		-	-	0.0
210	Sm protein	1		-	-	0.0
213	Gem-associated protein 7 homolog	1		-	-	0.0
200	U6 snRNA-associated Sm-like protein LSm8	1		-	-	0.0
203	Predicted protein	1		-	-	0.0
228	Uncharacterized protein	1		-	-	0.0
211	Small nuclear ribonucleoprotein E	1		-	-	0.0
218	Uncharacterized protein	1		-	-	0.0
221	U6 snRNA-associated Sm-like protein LSm8	1		-	-	0.0
230	Uncharacterized protein	1		-	-	0.0
219	Sm protein	1		-	-	0.0
206	U6 snRNA-associated Sm-like protein LSm3	1		-	-	0.0
220	Predicted protein	1		-	-	0.0
197	Small nuclear ribonucleoprotein Sm D2	1		-	-	0.0
208	Uncharacterized protein	1		-	-	0.0
201	Sm protein	1		-	-	0.0
231	Uncharacterized protein	1		-	-	0.0
223	Small nuclear ribonucleoprotein E	1		-	-	0.0
216	Uncharacterized protein	1		-	-	0.0