CATH Superfamily 2.30.30.100
The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was: waiting to be named.
FunFam 81: U6 snRNA-associated Sm-like protein LSm8p
Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.
There are 1 GO terms relating to "molecular function"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
| GO Term | Annotations | Evidence |
|---|---|---|
|
U6 snRNA 3'-end binding GO:0030629
Interacting selectively and non-covalently with the 3' end of the U6 small nuclear RNA (U6 snRNA).
|
6 | D6XD86 (/IMP) D6XD86 (/IMP) D6XD86 (/IMP) Q6QA14 (/IMP) Q6QA14 (/IMP) Q6QA14 (/IMP) |
There are 6 GO terms relating to "biological process"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
| GO Term | Annotations | Evidence |
|---|---|---|
|
Spliceosomal tri-snRNP complex assembly GO:0000244
The formation of a tri-snRNP complex containing U4 and U6 (or U4atac and U6atac) snRNAs and U5 snRNAs and associated proteins. This includes reannealing of U4 and U6 (or U4atac and U6atac) snRNAs released from previous rounds of splicing to reform the U4/U6 snRNP (or U4atac/U6atac snRNP) as well as the subsequent association of the U5 snRNP with the U4/U6 snRNP (or U4atac/U6atac snRNP) to form a tri-snRNP that is ready to reassemble into another spliceosome complex.
|
6 | D6XD86 (/IMP) D6XD86 (/IMP) D6XD86 (/IMP) Q6QA14 (/IMP) Q6QA14 (/IMP) Q6QA14 (/IMP) |
|
MRNA trans splicing, via spliceosome GO:0000365
The joining together of exons from two different primary transcripts of messenger RNA (mRNA) via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.
|
6 | D6XD86 (/IMP) D6XD86 (/IMP) D6XD86 (/IMP) Q6QA14 (/IMP) Q6QA14 (/IMP) Q6QA14 (/IMP) |
|
MRNA splicing, via spliceosome GO:0000398
The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.
|
6 | D6XD86 (/IMP) D6XD86 (/IMP) D6XD86 (/IMP) Q6QA14 (/IMP) Q6QA14 (/IMP) Q6QA14 (/IMP) |
|
Posttranscriptional regulation of gene expression GO:0010608
Any process that modulates the frequency, rate or extent of gene expression after the production of an RNA transcript.
|
6 | D6XD86 (/IDA) D6XD86 (/IDA) D6XD86 (/IDA) Q6QA14 (/IDA) Q6QA14 (/IDA) Q6QA14 (/IDA) |
|
Regulation of RNA stability GO:0043487
Any process that modulates the propensity of RNA molecules to degradation. Includes processes that both stabilize and destabilize RNAs.
|
6 | D6XD86 (/IMP) D6XD86 (/IMP) D6XD86 (/IMP) Q6QA14 (/IMP) Q6QA14 (/IMP) Q6QA14 (/IMP) |
|
MRNA cis splicing, via spliceosome GO:0045292
The joining together, after removal of an intervening sequence composed of one or more introns, of two segments of the same RNA molecule via spliceosomal catalysis to produce an mRNA composed only of exon sequences that all came from the same primary transcript.
|
6 | D6XD86 (/IMP) D6XD86 (/IMP) D6XD86 (/IMP) Q6QA14 (/IMP) Q6QA14 (/IMP) Q6QA14 (/IMP) |
There are 4 GO terms relating to "cellular component"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
| GO Term | Annotations | Evidence |
|---|---|---|
|
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
6 | D6XD86 (/IC) D6XD86 (/IC) D6XD86 (/IC) Q6QA14 (/IC) Q6QA14 (/IC) Q6QA14 (/IC) |
|
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
6 | D6XD86 (/IDA) D6XD86 (/IDA) D6XD86 (/IDA) Q6QA14 (/IDA) Q6QA14 (/IDA) Q6QA14 (/IDA) |
|
U6 snRNP GO:0005688
A ribonucleoprotein complex that contains small nuclear RNA U6.
|
6 | D6XD86 (/ISA) D6XD86 (/ISA) D6XD86 (/ISA) Q6QA14 (/ISA) Q6QA14 (/ISA) Q6QA14 (/ISA) |
|
U4/U6 x U5 tri-snRNP complex GO:0046540
A ribonucleoprotein complex formed by the association of the U4/U6 and U5 small nuclear ribonucleoproteins.
|
6 | D6XD86 (/IMP) D6XD86 (/IMP) D6XD86 (/IMP) Q6QA14 (/IMP) Q6QA14 (/IMP) Q6QA14 (/IMP) |
