The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was: waiting to be named.

Functional Families

Overview of the Structural Clusters (SC) and Functional Families within this CATH Superfamily. Clusters with a representative structure are represented by a filled circle.
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FunFam 7: U6 snRNA-associated Sm-like protein LSm3

Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.

There are 3 GO terms relating to "molecular function"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
RNA binding GO:0003723
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
59 P62310 (/HDA) P62310 (/HDA) P62310 (/HDA) P62310 (/HDA) P62310 (/HDA) P62310 (/HDA) P62310 (/HDA) P62310 (/HDA) P62310 (/HDA) P62310 (/HDA)
(49 more)
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
59 P62310 (/IPI) P62310 (/IPI) P62310 (/IPI) P62310 (/IPI) P62310 (/IPI) P62310 (/IPI) P62310 (/IPI) P62310 (/IPI) P62310 (/IPI) P62310 (/IPI)
(49 more)
U6 snRNA 3'-end binding GO:0030629
Interacting selectively and non-covalently with the 3' end of the U6 small nuclear RNA (U6 snRNA).
59 P62311 (/ISO) P62311 (/ISO) P62311 (/ISO) P62311 (/ISO) P62311 (/ISO) P62311 (/ISO) P62311 (/ISO) P62311 (/ISO) P62311 (/ISO) P62311 (/ISO)
(49 more)

There are 8 GO terms relating to "biological process"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
MRNA splicing, via spliceosome GO:0000398
The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.
123 P62311 (/ISS) P62311 (/ISS) P62311 (/ISS) P62311 (/ISS) P62311 (/ISS) P62311 (/ISS) P62311 (/ISS) P62311 (/ISS) P62311 (/ISS) P62311 (/ISS)
(113 more)
MRNA splicing, via spliceosome GO:0000398
The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.
63 P62310 (/IC) P62310 (/IC) P62310 (/IC) P62310 (/IC) P62310 (/IC) P62310 (/IC) P62310 (/IC) P62310 (/IC) P62310 (/IC) P62310 (/IC)
(53 more)
MRNA splicing, via spliceosome GO:0000398
The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.
59 P62310 (/IDA) P62310 (/IDA) P62310 (/IDA) P62310 (/IDA) P62310 (/IDA) P62310 (/IDA) P62310 (/IDA) P62310 (/IDA) P62310 (/IDA) P62310 (/IDA)
(49 more)
MRNA splicing, via spliceosome GO:0000398
The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.
59 P62311 (/ISO) P62311 (/ISO) P62311 (/ISO) P62311 (/ISO) P62311 (/ISO) P62311 (/ISO) P62311 (/ISO) P62311 (/ISO) P62311 (/ISO) P62311 (/ISO)
(49 more)
MRNA splicing, via spliceosome GO:0000398
The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.
59 P62310 (/TAS) P62310 (/TAS) P62310 (/TAS) P62310 (/TAS) P62310 (/TAS) P62310 (/TAS) P62310 (/TAS) P62310 (/TAS) P62310 (/TAS) P62310 (/TAS)
(49 more)
MRNA processing GO:0006397
Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide.
59 P62310 (/TAS) P62310 (/TAS) P62310 (/TAS) P62310 (/TAS) P62310 (/TAS) P62310 (/TAS) P62310 (/TAS) P62310 (/TAS) P62310 (/TAS) P62310 (/TAS)
(49 more)
Exonucleolytic catabolism of deadenylated mRNA GO:0043928
The chemical reactions and pathways resulting in the breakdown of the transcript body of a nuclear-transcribed mRNA that occurs when the ends are not protected by the 3'-poly(A) tail.
59 P62310 (/TAS) P62310 (/TAS) P62310 (/TAS) P62310 (/TAS) P62310 (/TAS) P62310 (/TAS) P62310 (/TAS) P62310 (/TAS) P62310 (/TAS) P62310 (/TAS)
(49 more)
Cytoplasmic mRNA processing body assembly GO:0033962
The aggregation, arrangement and bonding together of proteins and RNA molecules to form a cytoplasmic mRNA processing body.
4 Q8IGW7 (/IMP) Q8IMX8 (/IMP) Q8IMX8 (/IMP) Q8IMX8 (/IMP)

There are 23 GO terms relating to "cellular component"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
U4/U6 x U5 tri-snRNP complex GO:0046540
A ribonucleoprotein complex formed by the association of the U4/U6 and U5 small nuclear ribonucleoproteins.
119 P62311 (/ISS) P62311 (/ISS) P62311 (/ISS) P62311 (/ISS) P62311 (/ISS) P62311 (/ISS) P62311 (/ISS) P62311 (/ISS) P62311 (/ISS) P62311 (/ISS)
(109 more)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
118 P62311 (/ISS) P62311 (/ISS) P62311 (/ISS) P62311 (/ISS) P62311 (/ISS) P62311 (/ISS) P62311 (/ISS) P62311 (/ISS) P62311 (/ISS) P62311 (/ISS)
(108 more)
U2-type precatalytic spliceosome GO:0071005
A spliceosomal complex that is formed by the recruitment of the preassembled U4/U6.U5 tri-snRNP to the prespliceosome. Although all 5 snRNPs are present, the precatalytic spliceosome is catalytically inactive. The precatalytic spliceosome includes many proteins in addition to those found in the U1, U2 and U4/U6.U5 snRNPs.
118 P62311 (/ISS) P62311 (/ISS) P62311 (/ISS) P62311 (/ISS) P62311 (/ISS) P62311 (/ISS) P62311 (/ISS) P62311 (/ISS) P62311 (/ISS) P62311 (/ISS)
(108 more)
Lsm2-8 complex GO:0120115
A heteroheptameric, nuclear protein complex composed of Lsm2, Lsm3, Lsm4, Lsm5, Lsm6, Lsm7, and Lsm8, or orthologs thereof, that selectively binds to snRNAs, in particular the U6 snRNA, and also to unspliced transcripts localized within the nucleus.
118 P62311 (/ISS) P62311 (/ISS) P62311 (/ISS) P62311 (/ISS) P62311 (/ISS) P62311 (/ISS) P62311 (/ISS) P62311 (/ISS) P62311 (/ISS) P62311 (/ISS)
(108 more)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
59 P62310 (/IDA) P62310 (/IDA) P62310 (/IDA) P62310 (/IDA) P62310 (/IDA) P62310 (/IDA) P62310 (/IDA) P62310 (/IDA) P62310 (/IDA) P62310 (/IDA)
(49 more)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
59 P62311 (/ISO) P62311 (/ISO) P62311 (/ISO) P62311 (/ISO) P62311 (/ISO) P62311 (/ISO) P62311 (/ISO) P62311 (/ISO) P62311 (/ISO) P62311 (/ISO)
(49 more)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
59 P62310 (/TAS) P62310 (/TAS) P62310 (/TAS) P62310 (/TAS) P62310 (/TAS) P62310 (/TAS) P62310 (/TAS) P62310 (/TAS) P62310 (/TAS) P62310 (/TAS)
(49 more)
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
59 P62310 (/TAS) P62310 (/TAS) P62310 (/TAS) P62310 (/TAS) P62310 (/TAS) P62310 (/TAS) P62310 (/TAS) P62310 (/TAS) P62310 (/TAS) P62310 (/TAS)
(49 more)
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
59 P62310 (/TAS) P62310 (/TAS) P62310 (/TAS) P62310 (/TAS) P62310 (/TAS) P62310 (/TAS) P62310 (/TAS) P62310 (/TAS) P62310 (/TAS) P62310 (/TAS)
(49 more)
U4/U6 x U5 tri-snRNP complex GO:0046540
A ribonucleoprotein complex formed by the association of the U4/U6 and U5 small nuclear ribonucleoproteins.
59 P62310 (/IDA) P62310 (/IDA) P62310 (/IDA) P62310 (/IDA) P62310 (/IDA) P62310 (/IDA) P62310 (/IDA) P62310 (/IDA) P62310 (/IDA) P62310 (/IDA)
(49 more)
U4/U6 x U5 tri-snRNP complex GO:0046540
A ribonucleoprotein complex formed by the association of the U4/U6 and U5 small nuclear ribonucleoproteins.
59 P62311 (/ISO) P62311 (/ISO) P62311 (/ISO) P62311 (/ISO) P62311 (/ISO) P62311 (/ISO) P62311 (/ISO) P62311 (/ISO) P62311 (/ISO) P62311 (/ISO)
(49 more)
U2-type precatalytic spliceosome GO:0071005
A spliceosomal complex that is formed by the recruitment of the preassembled U4/U6.U5 tri-snRNP to the prespliceosome. Although all 5 snRNPs are present, the precatalytic spliceosome is catalytically inactive. The precatalytic spliceosome includes many proteins in addition to those found in the U1, U2 and U4/U6.U5 snRNPs.
59 P62310 (/IDA) P62310 (/IDA) P62310 (/IDA) P62310 (/IDA) P62310 (/IDA) P62310 (/IDA) P62310 (/IDA) P62310 (/IDA) P62310 (/IDA) P62310 (/IDA)
(49 more)
U2-type precatalytic spliceosome GO:0071005
A spliceosomal complex that is formed by the recruitment of the preassembled U4/U6.U5 tri-snRNP to the prespliceosome. Although all 5 snRNPs are present, the precatalytic spliceosome is catalytically inactive. The precatalytic spliceosome includes many proteins in addition to those found in the U1, U2 and U4/U6.U5 snRNPs.
59 P62311 (/ISO) P62311 (/ISO) P62311 (/ISO) P62311 (/ISO) P62311 (/ISO) P62311 (/ISO) P62311 (/ISO) P62311 (/ISO) P62311 (/ISO) P62311 (/ISO)
(49 more)
Catalytic step 2 spliceosome GO:0071013
A spliceosomal complex that contains three snRNPs, including U5, bound to a splicing intermediate in which the first catalytic cleavage of the 5' splice site has occurred. The precise subunit composition differs significantly from that of the catalytic step 1, or activated, spliceosome, and includes many proteins in addition to those found in the associated snRNPs.
59 P62310 (/IDA) P62310 (/IDA) P62310 (/IDA) P62310 (/IDA) P62310 (/IDA) P62310 (/IDA) P62310 (/IDA) P62310 (/IDA) P62310 (/IDA) P62310 (/IDA)
(49 more)
Catalytic step 2 spliceosome GO:0071013
A spliceosomal complex that contains three snRNPs, including U5, bound to a splicing intermediate in which the first catalytic cleavage of the 5' splice site has occurred. The precise subunit composition differs significantly from that of the catalytic step 1, or activated, spliceosome, and includes many proteins in addition to those found in the associated snRNPs.
59 P62311 (/ISO) P62311 (/ISO) P62311 (/ISO) P62311 (/ISO) P62311 (/ISO) P62311 (/ISO) P62311 (/ISO) P62311 (/ISO) P62311 (/ISO) P62311 (/ISO)
(49 more)
Lsm2-8 complex GO:0120115
A heteroheptameric, nuclear protein complex composed of Lsm2, Lsm3, Lsm4, Lsm5, Lsm6, Lsm7, and Lsm8, or orthologs thereof, that selectively binds to snRNAs, in particular the U6 snRNA, and also to unspliced transcripts localized within the nucleus.
59 P62310 (/IDA) P62310 (/IDA) P62310 (/IDA) P62310 (/IDA) P62310 (/IDA) P62310 (/IDA) P62310 (/IDA) P62310 (/IDA) P62310 (/IDA) P62310 (/IDA)
(49 more)
Lsm2-8 complex GO:0120115
A heteroheptameric, nuclear protein complex composed of Lsm2, Lsm3, Lsm4, Lsm5, Lsm6, Lsm7, and Lsm8, or orthologs thereof, that selectively binds to snRNAs, in particular the U6 snRNA, and also to unspliced transcripts localized within the nucleus.
59 P62311 (/ISO) P62311 (/ISO) P62311 (/ISO) P62311 (/ISO) P62311 (/ISO) P62311 (/ISO) P62311 (/ISO) P62311 (/ISO) P62311 (/ISO) P62311 (/ISO)
(49 more)
U6 snRNP GO:0005688
A ribonucleoprotein complex that contains small nuclear RNA U6.
5 Q1ZXK3 (/ISS) Q8IGW7 (/ISS) Q8IMX8 (/ISS) Q8IMX8 (/ISS) Q8IMX8 (/ISS)
Precatalytic spliceosome GO:0071011
A spliceosomal complex that is formed by the recruitment of a preassembled U5-containing tri-snRNP to the prespliceosome. Although all 5 snRNPs are present, the precatalytic spliceosome is catalytically inactive. The precatalytic spliceosome includes many proteins in addition to those found in the associated snRNPs.
4 Q8IGW7 (/HDA) Q8IMX8 (/HDA) Q8IMX8 (/HDA) Q8IMX8 (/HDA)
Catalytic step 2 spliceosome GO:0071013
A spliceosomal complex that contains three snRNPs, including U5, bound to a splicing intermediate in which the first catalytic cleavage of the 5' splice site has occurred. The precise subunit composition differs significantly from that of the catalytic step 1, or activated, spliceosome, and includes many proteins in addition to those found in the associated snRNPs.
4 Q8IGW7 (/HDA) Q8IMX8 (/HDA) Q8IMX8 (/HDA) Q8IMX8 (/HDA)
P-body GO:0000932
A focus in the cytoplasm where mRNAs may become inactivated by decapping or some other mechanism. Protein and RNA localized to these foci are involved in mRNA degradation, nonsense-mediated mRNA decay (NMD), translational repression, and RNA-mediated gene silencing.
1 Q9U1W8 (/IDA)
Nucleolus GO:0005730
A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.
1 Q1ZXK3 (/ISS)
Small nucleolar ribonucleoprotein complex GO:0005732
A ribonucleoprotein complex that contains an RNA molecule of the small nucleolar RNA (snoRNA) family and associated proteins. Most are involved in a step of processing of rRNA: cleavage, 2'-O-methylation, or pseudouridylation. The majority, though not all, fall into one of two classes, box C/D type or box H/ACA type.
1 Q1ZXK3 (/ISS)
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