CATH Superfamily 2.30.30.100
The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was: waiting to be named.
FunFam 67: U6 snRNA-associated Sm-like protein LSm5
Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.
There are 2 GO terms relating to "molecular function"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
|
9 | O42978 (/IPI) P40089 (/IPI) P40089 (/IPI) P40089 (/IPI) P40089 (/IPI) P40089 (/IPI) P40089 (/IPI) P40089 (/IPI) P40089 (/IPI) |
Poly(U) RNA binding GO:0008266
Interacting selectively and non-covalently with a sequence of uracil residues in an RNA molecule.
|
1 | O42978 (/IDA) |
There are 5 GO terms relating to "biological process"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
MRNA splicing, via spliceosome GO:0000398
The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.
|
8 | P40089 (/IPI) P40089 (/IPI) P40089 (/IPI) P40089 (/IPI) P40089 (/IPI) P40089 (/IPI) P40089 (/IPI) P40089 (/IPI) |
Nuclear-transcribed mRNA catabolic process GO:0000956
The chemical reactions and pathways resulting in the breakdown of nuclear-transcribed mRNAs in eukaryotic cells.
|
8 | P40089 (/TAS) P40089 (/TAS) P40089 (/TAS) P40089 (/TAS) P40089 (/TAS) P40089 (/TAS) P40089 (/TAS) P40089 (/TAS) |
RRNA processing GO:0006364
Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules.
|
1 | O42978 (/ISS) |
MRNA cis splicing, via spliceosome GO:0045292
The joining together, after removal of an intervening sequence composed of one or more introns, of two segments of the same RNA molecule via spliceosomal catalysis to produce an mRNA composed only of exon sequences that all came from the same primary transcript.
|
1 | O42978 (/ISS) |
Telomerase holoenzyme complex assembly GO:1905323
The aggregation, arrangement and bonding together of a set of components to form a telomerase holoenzyme complex.
|
1 | O42978 (/TAS) |
There are 13 GO terms relating to "cellular component"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
U6 snRNP GO:0005688
A ribonucleoprotein complex that contains small nuclear RNA U6.
|
8 | P40089 (/IDA) P40089 (/IDA) P40089 (/IDA) P40089 (/IDA) P40089 (/IDA) P40089 (/IDA) P40089 (/IDA) P40089 (/IDA) |
U6 snRNP GO:0005688
A ribonucleoprotein complex that contains small nuclear RNA U6.
|
8 | P40089 (/TAS) P40089 (/TAS) P40089 (/TAS) P40089 (/TAS) P40089 (/TAS) P40089 (/TAS) P40089 (/TAS) P40089 (/TAS) |
Nucleolus GO:0005730
A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.
|
8 | P40089 (/IDA) P40089 (/IDA) P40089 (/IDA) P40089 (/IDA) P40089 (/IDA) P40089 (/IDA) P40089 (/IDA) P40089 (/IDA) |
Small nucleolar ribonucleoprotein complex GO:0005732
A ribonucleoprotein complex that contains an RNA molecule of the small nucleolar RNA (snoRNA) family and associated proteins. Most are involved in a step of processing of rRNA: cleavage, 2'-O-methylation, or pseudouridylation. The majority, though not all, fall into one of two classes, box C/D type or box H/ACA type.
|
8 | P40089 (/IPI) P40089 (/IPI) P40089 (/IPI) P40089 (/IPI) P40089 (/IPI) P40089 (/IPI) P40089 (/IPI) P40089 (/IPI) |
U4/U6 x U5 tri-snRNP complex GO:0046540
A ribonucleoprotein complex formed by the association of the U4/U6 and U5 small nuclear ribonucleoproteins.
|
8 | P40089 (/IDA) P40089 (/IDA) P40089 (/IDA) P40089 (/IDA) P40089 (/IDA) P40089 (/IDA) P40089 (/IDA) P40089 (/IDA) |
Lsm1-7-Pat1 complex GO:1990726
A conserved, heteroheptameric, cytoplasmic protein complex composed of Lsm1, Lsm2, Lsm3, Lsm4, Lsm5, Lsm6, Lsm7, and Pat1, or orthologs thereof, that shows a strong binding preference for oligoadenylated RNAs over polyadenylated RNAs. May bind further associated proteins. Facilitates the deadenylation-dependent decapping of mRNA in the P-body thereby regulating mRNA decay and subsequent degradation by the 5' to 3' pathway.
|
8 | P40089 (/IDA) P40089 (/IDA) P40089 (/IDA) P40089 (/IDA) P40089 (/IDA) P40089 (/IDA) P40089 (/IDA) P40089 (/IDA) |
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
1 | O42978 (/HDA) |
U6 snRNP GO:0005688
A ribonucleoprotein complex that contains small nuclear RNA U6.
|
1 | O42978 (/ISS) |
Telomerase holoenzyme complex GO:0005697
Telomerase is a ribonucleoprotein enzyme complex, with a minimal catalytic core composed of a catalytic reverse transcriptase subunit and an RNA subunit that provides the template for telomeric DNA addition. In vivo, the holoenzyme complex often contains additional subunits.
|
1 | O42978 (/TAS) |
Nucleolus GO:0005730
A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.
|
1 | O42978 (/ISS) |
Small nucleolar ribonucleoprotein complex GO:0005732
A ribonucleoprotein complex that contains an RNA molecule of the small nucleolar RNA (snoRNA) family and associated proteins. Most are involved in a step of processing of rRNA: cleavage, 2'-O-methylation, or pseudouridylation. The majority, though not all, fall into one of two classes, box C/D type or box H/ACA type.
|
1 | O42978 (/ISS) |
U4/U6 x U5 tri-snRNP complex GO:0046540
A ribonucleoprotein complex formed by the association of the U4/U6 and U5 small nuclear ribonucleoproteins.
|
1 | O42978 (/ISS) |
Lsm2-8 complex GO:0120115
A heteroheptameric, nuclear protein complex composed of Lsm2, Lsm3, Lsm4, Lsm5, Lsm6, Lsm7, and Lsm8, or orthologs thereof, that selectively binds to snRNAs, in particular the U6 snRNA, and also to unspliced transcripts localized within the nucleus.
|
1 | O42978 (/TAS) |