The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was: waiting to be named.

Functional Families

Overview of the Structural Clusters (SC) and Functional Families within this CATH Superfamily. Clusters with a representative structure are represented by a filled circle.
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FunFam 58: Small nuclear ribonucleoprotein Sm D3

Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.

There are 1 GO terms relating to "molecular function"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
RNA binding GO:0003723
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
1 Q4Q224 (/ISO)

There are 5 GO terms relating to "biological process"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
MRNA trans splicing, via spliceosome GO:0000365
The joining together of exons from two different primary transcripts of messenger RNA (mRNA) via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.
4 Q580B7 (/IPI) Q580B7 (/IPI) Q580B7 (/IPI) Q580B7 (/IPI)
RNA splicing, via transesterification reactions GO:0000375
Splicing of RNA via a series of two transesterification reactions.
4 Q580B7 (/ISM) Q580B7 (/ISM) Q580B7 (/ISM) Q580B7 (/ISM)
MRNA processing GO:0006397
Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide.
4 Q580B7 (/ISM) Q580B7 (/ISM) Q580B7 (/ISM) Q580B7 (/ISM)
RNA splicing GO:0008380
The process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA.
4 Q580B7 (/ISM) Q580B7 (/ISM) Q580B7 (/ISM) Q580B7 (/ISM)
Alternative mRNA splicing, via spliceosome GO:0000380
The process of generating multiple mRNA molecules from a given set of exons by differential use of exons from the primary transcript(s) to form multiple mature mRNAs that vary in their exon composition.
1 Q4Q224 (/ISO)

There are 14 GO terms relating to "cellular component"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
4 Q580B7 (/IPI) Q580B7 (/IPI) Q580B7 (/IPI) Q580B7 (/IPI)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
4 Q580B7 (/ISM) Q580B7 (/ISM) Q580B7 (/ISM) Q580B7 (/ISM)
U5 snRNP GO:0005682
A ribonucleoprotein complex that contains small nuclear RNA U5.
4 Q580B7 (/ISO) Q580B7 (/ISO) Q580B7 (/ISO) Q580B7 (/ISO)
U1 snRNP GO:0005685
A ribonucleoprotein complex that contains small nuclear RNA U1.
4 Q580B7 (/ISO) Q580B7 (/ISO) Q580B7 (/ISO) Q580B7 (/ISO)
Nucleolus GO:0005730
A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.
4 Q580B7 (/IDA) Q580B7 (/IDA) Q580B7 (/IDA) Q580B7 (/IDA)
Small nuclear ribonucleoprotein complex GO:0030532
A complex composed of RNA of the small nuclear RNA (snRNA) class and protein, found in the nucleus of a eukaryotic cell. These are typically named after the snRNA(s) they contain, e.g. U1 snRNP or U4/U6 snRNP. Many, but not all, of these complexes are involved in splicing of nuclear mRNAs.
4 Q580B7 (/ISM) Q580B7 (/ISM) Q580B7 (/ISM) Q580B7 (/ISM)
SL snRNP GO:0071024
A ribonucleoprotein complex that contains spliced leader (SL) RNA.
4 Q580B7 (/ISO) Q580B7 (/ISO) Q580B7 (/ISO) Q580B7 (/ISO)
Spliceosomal snRNP complex GO:0097525
A ribonucleoprotein complex involved in formation of the spliceosome and composed of one or more snRNA and multiple protein components.
4 Q580B7 (/IPI) Q580B7 (/IPI) Q580B7 (/IPI) Q580B7 (/IPI)
U5 snRNP GO:0005682
A ribonucleoprotein complex that contains small nuclear RNA U5.
3 Q4Q2F6 (/IDA) Q4Q2F6 (/IDA) Q4Q2F6 (/IDA)
U1 snRNP GO:0005685
A ribonucleoprotein complex that contains small nuclear RNA U1.
3 Q4Q2F6 (/IDA) Q4Q2F6 (/IDA) Q4Q2F6 (/IDA)
Nucleolus GO:0005730
A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.
3 Q4Q2F6 (/ISO) Q4Q2F6 (/ISO) Q4Q2F6 (/ISO)
SL snRNP GO:0071024
A ribonucleoprotein complex that contains spliced leader (SL) RNA.
3 Q4Q2F6 (/IDA) Q4Q2F6 (/IDA) Q4Q2F6 (/IDA)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
1 Q4Q224 (/ISO)
U2 snRNP GO:0005686
A ribonucleoprotein complex that contains small nuclear RNA U2.
1 Q4Q224 (/ISO)
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