The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was: waiting to be named.

Functional Families

Overview of the Structural Clusters (SC) and Functional Families within this CATH Superfamily. Clusters with a representative structure are represented by a filled circle.
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FunFam 5: U6 snRNA-associated Sm-like protein LSm4

Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.

There are 5 GO terms relating to "molecular function"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
37 Q9VKW8 (/IPI) Q9Y4Z0 (/IPI) Q9Y4Z0 (/IPI) Q9Y4Z0 (/IPI) Q9Y4Z0 (/IPI) Q9Y4Z0 (/IPI) Q9Y4Z0 (/IPI) Q9Y4Z0 (/IPI) Q9Y4Z0 (/IPI) Q9Y4Z0 (/IPI)
(27 more)
RNA binding GO:0003723
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
36 Q9Y4Z0 (/HDA) Q9Y4Z0 (/HDA) Q9Y4Z0 (/HDA) Q9Y4Z0 (/HDA) Q9Y4Z0 (/HDA) Q9Y4Z0 (/HDA) Q9Y4Z0 (/HDA) Q9Y4Z0 (/HDA) Q9Y4Z0 (/HDA) Q9Y4Z0 (/HDA)
(26 more)
PH domain binding GO:0042731
Interacting selectively and non-covalently with a PH domain (pleckstrin homology) of a protein, a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signaling or as constituents of the cytoskeleton.
36 Q9Y4Z0 (/IDA) Q9Y4Z0 (/IDA) Q9Y4Z0 (/IDA) Q9Y4Z0 (/IDA) Q9Y4Z0 (/IDA) Q9Y4Z0 (/IDA) Q9Y4Z0 (/IDA) Q9Y4Z0 (/IDA) Q9Y4Z0 (/IDA) Q9Y4Z0 (/IDA)
(26 more)
U6 snRNA binding GO:0017070
Interacting selectively and non-covalently with the U6 small nuclear RNA (U6 snRNA).
1 Q9VKW8 (/ISS)
PH domain binding GO:0042731
Interacting selectively and non-covalently with a PH domain (pleckstrin homology) of a protein, a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signaling or as constituents of the cytoskeleton.
1 Q9QXA5 (/ISO)

There are 6 GO terms relating to "biological process"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
MRNA splicing, via spliceosome GO:0000398
The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.
38 Q3ZBK6 (/ISS) Q3ZBK6 (/ISS) Q3ZBK6 (/ISS) Q3ZBK6 (/ISS) Q3ZBK6 (/ISS) Q3ZBK6 (/ISS) Q3ZBK6 (/ISS) Q3ZBK6 (/ISS) Q3ZBK6 (/ISS) Q3ZBK6 (/ISS)
(28 more)
MRNA splicing, via spliceosome GO:0000398
The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.
36 Q9Y4Z0 (/IDA) Q9Y4Z0 (/IDA) Q9Y4Z0 (/IDA) Q9Y4Z0 (/IDA) Q9Y4Z0 (/IDA) Q9Y4Z0 (/IDA) Q9Y4Z0 (/IDA) Q9Y4Z0 (/IDA) Q9Y4Z0 (/IDA) Q9Y4Z0 (/IDA)
(26 more)
MRNA splicing, via spliceosome GO:0000398
The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.
36 Q9Y4Z0 (/TAS) Q9Y4Z0 (/TAS) Q9Y4Z0 (/TAS) Q9Y4Z0 (/TAS) Q9Y4Z0 (/TAS) Q9Y4Z0 (/TAS) Q9Y4Z0 (/TAS) Q9Y4Z0 (/TAS) Q9Y4Z0 (/TAS) Q9Y4Z0 (/TAS)
(26 more)
RNA splicing GO:0008380
The process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA.
36 Q9Y4Z0 (/TAS) Q9Y4Z0 (/TAS) Q9Y4Z0 (/TAS) Q9Y4Z0 (/TAS) Q9Y4Z0 (/TAS) Q9Y4Z0 (/TAS) Q9Y4Z0 (/TAS) Q9Y4Z0 (/TAS) Q9Y4Z0 (/TAS) Q9Y4Z0 (/TAS)
(26 more)
Exonucleolytic catabolism of deadenylated mRNA GO:0043928
The chemical reactions and pathways resulting in the breakdown of the transcript body of a nuclear-transcribed mRNA that occurs when the ends are not protected by the 3'-poly(A) tail.
36 Q9Y4Z0 (/TAS) Q9Y4Z0 (/TAS) Q9Y4Z0 (/TAS) Q9Y4Z0 (/TAS) Q9Y4Z0 (/TAS) Q9Y4Z0 (/TAS) Q9Y4Z0 (/TAS) Q9Y4Z0 (/TAS) Q9Y4Z0 (/TAS) Q9Y4Z0 (/TAS)
(26 more)
MRNA splicing, via spliceosome GO:0000398
The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.
1 Q9QXA5 (/ISO)

There are 25 GO terms relating to "cellular component"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
39 D4A2C6 (/IDA) D4A2C6 (/IDA) D4A2C6 (/IDA) Q9Y4Z0 (/IDA) Q9Y4Z0 (/IDA) Q9Y4Z0 (/IDA) Q9Y4Z0 (/IDA) Q9Y4Z0 (/IDA) Q9Y4Z0 (/IDA) Q9Y4Z0 (/IDA)
(29 more)
U4/U6 x U5 tri-snRNP complex GO:0046540
A ribonucleoprotein complex formed by the association of the U4/U6 and U5 small nuclear ribonucleoproteins.
38 Q3ZBK6 (/ISS) Q3ZBK6 (/ISS) Q3ZBK6 (/ISS) Q3ZBK6 (/ISS) Q3ZBK6 (/ISS) Q3ZBK6 (/ISS) Q3ZBK6 (/ISS) Q3ZBK6 (/ISS) Q3ZBK6 (/ISS) Q3ZBK6 (/ISS)
(28 more)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
37 Q3ZBK6 (/ISS) Q3ZBK6 (/ISS) Q3ZBK6 (/ISS) Q3ZBK6 (/ISS) Q3ZBK6 (/ISS) Q3ZBK6 (/ISS) Q3ZBK6 (/ISS) Q3ZBK6 (/ISS) Q3ZBK6 (/ISS) Q3ZBK6 (/ISS)
(27 more)
U2-type precatalytic spliceosome GO:0071005
A spliceosomal complex that is formed by the recruitment of the preassembled U4/U6.U5 tri-snRNP to the prespliceosome. Although all 5 snRNPs are present, the precatalytic spliceosome is catalytically inactive. The precatalytic spliceosome includes many proteins in addition to those found in the U1, U2 and U4/U6.U5 snRNPs.
37 Q3ZBK6 (/ISS) Q3ZBK6 (/ISS) Q3ZBK6 (/ISS) Q3ZBK6 (/ISS) Q3ZBK6 (/ISS) Q3ZBK6 (/ISS) Q3ZBK6 (/ISS) Q3ZBK6 (/ISS) Q3ZBK6 (/ISS) Q3ZBK6 (/ISS)
(27 more)
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
36 Q9Y4Z0 (/TAS) Q9Y4Z0 (/TAS) Q9Y4Z0 (/TAS) Q9Y4Z0 (/TAS) Q9Y4Z0 (/TAS) Q9Y4Z0 (/TAS) Q9Y4Z0 (/TAS) Q9Y4Z0 (/TAS) Q9Y4Z0 (/TAS) Q9Y4Z0 (/TAS)
(26 more)
U6 snRNP GO:0005688
A ribonucleoprotein complex that contains small nuclear RNA U6.
36 Q9Y4Z0 (/TAS) Q9Y4Z0 (/TAS) Q9Y4Z0 (/TAS) Q9Y4Z0 (/TAS) Q9Y4Z0 (/TAS) Q9Y4Z0 (/TAS) Q9Y4Z0 (/TAS) Q9Y4Z0 (/TAS) Q9Y4Z0 (/TAS) Q9Y4Z0 (/TAS)
(26 more)
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
36 Q9Y4Z0 (/IDA) Q9Y4Z0 (/IDA) Q9Y4Z0 (/IDA) Q9Y4Z0 (/IDA) Q9Y4Z0 (/IDA) Q9Y4Z0 (/IDA) Q9Y4Z0 (/IDA) Q9Y4Z0 (/IDA) Q9Y4Z0 (/IDA) Q9Y4Z0 (/IDA)
(26 more)
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
36 Q9Y4Z0 (/TAS) Q9Y4Z0 (/TAS) Q9Y4Z0 (/TAS) Q9Y4Z0 (/TAS) Q9Y4Z0 (/TAS) Q9Y4Z0 (/TAS) Q9Y4Z0 (/TAS) Q9Y4Z0 (/TAS) Q9Y4Z0 (/TAS) Q9Y4Z0 (/TAS)
(26 more)
Membrane GO:0016020
A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
36 Q9Y4Z0 (/IDA) Q9Y4Z0 (/IDA) Q9Y4Z0 (/IDA) Q9Y4Z0 (/IDA) Q9Y4Z0 (/IDA) Q9Y4Z0 (/IDA) Q9Y4Z0 (/IDA) Q9Y4Z0 (/IDA) Q9Y4Z0 (/IDA) Q9Y4Z0 (/IDA)
(26 more)
Protein-containing complex GO:0032991
A stable assembly of two or more macromolecules, i.e. proteins, nucleic acids, carbohydrates or lipids, in which at least one component is a protein and the constituent parts function together.
36 Q9Y4Z0 (/IDA) Q9Y4Z0 (/IDA) Q9Y4Z0 (/IDA) Q9Y4Z0 (/IDA) Q9Y4Z0 (/IDA) Q9Y4Z0 (/IDA) Q9Y4Z0 (/IDA) Q9Y4Z0 (/IDA) Q9Y4Z0 (/IDA) Q9Y4Z0 (/IDA)
(26 more)
U4/U6 x U5 tri-snRNP complex GO:0046540
A ribonucleoprotein complex formed by the association of the U4/U6 and U5 small nuclear ribonucleoproteins.
36 Q9Y4Z0 (/IDA) Q9Y4Z0 (/IDA) Q9Y4Z0 (/IDA) Q9Y4Z0 (/IDA) Q9Y4Z0 (/IDA) Q9Y4Z0 (/IDA) Q9Y4Z0 (/IDA) Q9Y4Z0 (/IDA) Q9Y4Z0 (/IDA) Q9Y4Z0 (/IDA)
(26 more)
U2-type precatalytic spliceosome GO:0071005
A spliceosomal complex that is formed by the recruitment of the preassembled U4/U6.U5 tri-snRNP to the prespliceosome. Although all 5 snRNPs are present, the precatalytic spliceosome is catalytically inactive. The precatalytic spliceosome includes many proteins in addition to those found in the U1, U2 and U4/U6.U5 snRNPs.
36 Q9Y4Z0 (/IDA) Q9Y4Z0 (/IDA) Q9Y4Z0 (/IDA) Q9Y4Z0 (/IDA) Q9Y4Z0 (/IDA) Q9Y4Z0 (/IDA) Q9Y4Z0 (/IDA) Q9Y4Z0 (/IDA) Q9Y4Z0 (/IDA) Q9Y4Z0 (/IDA)
(26 more)
Lsm2-8 complex GO:0120115
A heteroheptameric, nuclear protein complex composed of Lsm2, Lsm3, Lsm4, Lsm5, Lsm6, Lsm7, and Lsm8, or orthologs thereof, that selectively binds to snRNAs, in particular the U6 snRNA, and also to unspliced transcripts localized within the nucleus.
36 Q9Y4Z0 (/IDA) Q9Y4Z0 (/IDA) Q9Y4Z0 (/IDA) Q9Y4Z0 (/IDA) Q9Y4Z0 (/IDA) Q9Y4Z0 (/IDA) Q9Y4Z0 (/IDA) Q9Y4Z0 (/IDA) Q9Y4Z0 (/IDA) Q9Y4Z0 (/IDA)
(26 more)
Neuron projection GO:0043005
A prolongation or process extending from a nerve cell, e.g. an axon or dendrite.
3 D4A2C6 (/IDA) D4A2C6 (/IDA) D4A2C6 (/IDA)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
1 Q9QXA5 (/ISO)
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
1 Q9QXA5 (/ISS)
Spliceosomal complex GO:0005681
Any of a series of ribonucleoprotein complexes that contain snRNA(s) and small nuclear ribonucleoproteins (snRNPs), and are formed sequentially during the spliceosomal splicing of one or more substrate RNAs, and which also contain the RNA substrate(s) from the initial target RNAs of splicing, the splicing intermediate RNA(s), to the final RNA products. During cis-splicing, the initial target RNA is a single, contiguous RNA transcript, whether mRNA, snoRNA, etc., and the released products are a spliced RNA and an excised intron, generally as a lariat structure. During trans-splicing, there are two initial substrate RNAs, the spliced leader RNA and a pre-mRNA.
1 Q9QXA5 (/ISS)
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
1 Q9QXA5 (/ISS)
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
1 Q9QXA5 (/ISO)
Membrane GO:0016020
A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
1 Q9QXA5 (/ISO)
Protein-containing complex GO:0032991
A stable assembly of two or more macromolecules, i.e. proteins, nucleic acids, carbohydrates or lipids, in which at least one component is a protein and the constituent parts function together.
1 Q9QXA5 (/ISO)
Neuron projection GO:0043005
A prolongation or process extending from a nerve cell, e.g. an axon or dendrite.
1 Q9QXA5 (/ISO)
U4/U6 x U5 tri-snRNP complex GO:0046540
A ribonucleoprotein complex formed by the association of the U4/U6 and U5 small nuclear ribonucleoproteins.
1 Q9QXA5 (/ISO)
U2-type precatalytic spliceosome GO:0071005
A spliceosomal complex that is formed by the recruitment of the preassembled U4/U6.U5 tri-snRNP to the prespliceosome. Although all 5 snRNPs are present, the precatalytic spliceosome is catalytically inactive. The precatalytic spliceosome includes many proteins in addition to those found in the U1, U2 and U4/U6.U5 snRNPs.
1 Q9QXA5 (/ISO)
Lsm2-8 complex GO:0120115
A heteroheptameric, nuclear protein complex composed of Lsm2, Lsm3, Lsm4, Lsm5, Lsm6, Lsm7, and Lsm8, or orthologs thereof, that selectively binds to snRNAs, in particular the U6 snRNA, and also to unspliced transcripts localized within the nucleus.
1 Q9QXA5 (/ISO)
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