CATH Superfamily 2.30.30.100
The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was: waiting to be named.
FunFam 3: U6 snRNA-associated Sm-like protein LSm5
Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.
There are 4 GO terms relating to "molecular function"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
|
139 |
O18694 (/IPI)
P62322 (/IPI)
P62322 (/IPI)
P62322 (/IPI)
P62322 (/IPI)
P62322 (/IPI)
P62322 (/IPI)
P62322 (/IPI)
P62322 (/IPI)
P62322 (/IPI)
(129 more) |
RNA binding GO:0003723
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
|
66 |
Q9Y4Y9 (/TAS)
Q9Y4Y9 (/TAS)
Q9Y4Y9 (/TAS)
Q9Y4Y9 (/TAS)
Q9Y4Y9 (/TAS)
Q9Y4Y9 (/TAS)
Q9Y4Y9 (/TAS)
Q9Y4Y9 (/TAS)
Q9Y4Y9 (/TAS)
Q9Y4Y9 (/TAS)
(56 more) |
Protein heterodimerization activity GO:0046982
Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer.
|
66 |
P62322 (/ISO)
P62322 (/ISO)
P62322 (/ISO)
P62322 (/ISO)
P62322 (/ISO)
P62322 (/ISO)
P62322 (/ISO)
P62322 (/ISO)
P62322 (/ISO)
P62322 (/ISO)
(56 more) |
RNA binding GO:0003723
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
|
2 | Q9FKB0 (/ISS) Q9FKB0 (/ISS) |
There are 10 GO terms relating to "biological process"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
MRNA splicing, via spliceosome GO:0000398
The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.
|
204 |
P62322 (/ISS)
P62322 (/ISS)
P62322 (/ISS)
P62322 (/ISS)
P62322 (/ISS)
P62322 (/ISS)
P62322 (/ISS)
P62322 (/ISS)
P62322 (/ISS)
P62322 (/ISS)
(194 more) |
MRNA splicing, via spliceosome GO:0000398
The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.
|
66 |
Q9Y4Y9 (/IDA)
Q9Y4Y9 (/IDA)
Q9Y4Y9 (/IDA)
Q9Y4Y9 (/IDA)
Q9Y4Y9 (/IDA)
Q9Y4Y9 (/IDA)
Q9Y4Y9 (/IDA)
Q9Y4Y9 (/IDA)
Q9Y4Y9 (/IDA)
Q9Y4Y9 (/IDA)
(56 more) |
MRNA splicing, via spliceosome GO:0000398
The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.
|
66 |
P62322 (/ISO)
P62322 (/ISO)
P62322 (/ISO)
P62322 (/ISO)
P62322 (/ISO)
P62322 (/ISO)
P62322 (/ISO)
P62322 (/ISO)
P62322 (/ISO)
P62322 (/ISO)
(56 more) |
MRNA splicing, via spliceosome GO:0000398
The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.
|
66 |
Q9Y4Y9 (/TAS)
Q9Y4Y9 (/TAS)
Q9Y4Y9 (/TAS)
Q9Y4Y9 (/TAS)
Q9Y4Y9 (/TAS)
Q9Y4Y9 (/TAS)
Q9Y4Y9 (/TAS)
Q9Y4Y9 (/TAS)
Q9Y4Y9 (/TAS)
Q9Y4Y9 (/TAS)
(56 more) |
MRNA processing GO:0006397
Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide.
|
66 |
Q9Y4Y9 (/TAS)
Q9Y4Y9 (/TAS)
Q9Y4Y9 (/TAS)
Q9Y4Y9 (/TAS)
Q9Y4Y9 (/TAS)
Q9Y4Y9 (/TAS)
Q9Y4Y9 (/TAS)
Q9Y4Y9 (/TAS)
Q9Y4Y9 (/TAS)
Q9Y4Y9 (/TAS)
(56 more) |
MRNA catabolic process GO:0006402
The chemical reactions and pathways resulting in the breakdown of mRNA, messenger RNA, which is responsible for carrying the coded genetic 'message', transcribed from DNA, to sites of protein assembly at the ribosomes.
|
66 |
P62322 (/ISO)
P62322 (/ISO)
P62322 (/ISO)
P62322 (/ISO)
P62322 (/ISO)
P62322 (/ISO)
P62322 (/ISO)
P62322 (/ISO)
P62322 (/ISO)
P62322 (/ISO)
(56 more) |
Response to bacterium GO:0009617
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a bacterium.
|
66 |
P62322 (/IEP)
P62322 (/IEP)
P62322 (/IEP)
P62322 (/IEP)
P62322 (/IEP)
P62322 (/IEP)
P62322 (/IEP)
P62322 (/IEP)
P62322 (/IEP)
P62322 (/IEP)
(56 more) |
Exonucleolytic catabolism of deadenylated mRNA GO:0043928
The chemical reactions and pathways resulting in the breakdown of the transcript body of a nuclear-transcribed mRNA that occurs when the ends are not protected by the 3'-poly(A) tail.
|
66 |
Q9Y4Y9 (/TAS)
Q9Y4Y9 (/TAS)
Q9Y4Y9 (/TAS)
Q9Y4Y9 (/TAS)
Q9Y4Y9 (/TAS)
Q9Y4Y9 (/TAS)
Q9Y4Y9 (/TAS)
Q9Y4Y9 (/TAS)
Q9Y4Y9 (/TAS)
Q9Y4Y9 (/TAS)
(56 more) |
Response to water deprivation GO:0009414
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a water deprivation stimulus, prolonged deprivation of water.
|
2 | Q9FKB0 (/IMP) Q9FKB0 (/IMP) |
Response to abscisic acid GO:0009737
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an abscisic acid stimulus.
|
2 | Q9FKB0 (/IMP) Q9FKB0 (/IMP) |
There are 17 GO terms relating to "cellular component"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
198 |
P62322 (/ISS)
P62322 (/ISS)
P62322 (/ISS)
P62322 (/ISS)
P62322 (/ISS)
P62322 (/ISS)
P62322 (/ISS)
P62322 (/ISS)
P62322 (/ISS)
P62322 (/ISS)
(188 more) |
U4/U6 x U5 tri-snRNP complex GO:0046540
A ribonucleoprotein complex formed by the association of the U4/U6 and U5 small nuclear ribonucleoproteins.
|
198 |
P62322 (/ISS)
P62322 (/ISS)
P62322 (/ISS)
P62322 (/ISS)
P62322 (/ISS)
P62322 (/ISS)
P62322 (/ISS)
P62322 (/ISS)
P62322 (/ISS)
P62322 (/ISS)
(188 more) |
U2-type precatalytic spliceosome GO:0071005
A spliceosomal complex that is formed by the recruitment of the preassembled U4/U6.U5 tri-snRNP to the prespliceosome. Although all 5 snRNPs are present, the precatalytic spliceosome is catalytically inactive. The precatalytic spliceosome includes many proteins in addition to those found in the U1, U2 and U4/U6.U5 snRNPs.
|
198 |
P62322 (/ISS)
P62322 (/ISS)
P62322 (/ISS)
P62322 (/ISS)
P62322 (/ISS)
P62322 (/ISS)
P62322 (/ISS)
P62322 (/ISS)
P62322 (/ISS)
P62322 (/ISS)
(188 more) |
Lsm2-8 complex GO:0120115
A heteroheptameric, nuclear protein complex composed of Lsm2, Lsm3, Lsm4, Lsm5, Lsm6, Lsm7, and Lsm8, or orthologs thereof, that selectively binds to snRNAs, in particular the U6 snRNA, and also to unspliced transcripts localized within the nucleus.
|
198 |
P62322 (/ISS)
P62322 (/ISS)
P62322 (/ISS)
P62322 (/ISS)
P62322 (/ISS)
P62322 (/ISS)
P62322 (/ISS)
P62322 (/ISS)
P62322 (/ISS)
P62322 (/ISS)
(188 more) |
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
66 |
Q9Y4Y9 (/IDA)
Q9Y4Y9 (/IDA)
Q9Y4Y9 (/IDA)
Q9Y4Y9 (/IDA)
Q9Y4Y9 (/IDA)
Q9Y4Y9 (/IDA)
Q9Y4Y9 (/IDA)
Q9Y4Y9 (/IDA)
Q9Y4Y9 (/IDA)
Q9Y4Y9 (/IDA)
(56 more) |
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
66 |
P62322 (/ISO)
P62322 (/ISO)
P62322 (/ISO)
P62322 (/ISO)
P62322 (/ISO)
P62322 (/ISO)
P62322 (/ISO)
P62322 (/ISO)
P62322 (/ISO)
P62322 (/ISO)
(56 more) |
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
66 |
Q9Y4Y9 (/TAS)
Q9Y4Y9 (/TAS)
Q9Y4Y9 (/TAS)
Q9Y4Y9 (/TAS)
Q9Y4Y9 (/TAS)
Q9Y4Y9 (/TAS)
Q9Y4Y9 (/TAS)
Q9Y4Y9 (/TAS)
Q9Y4Y9 (/TAS)
Q9Y4Y9 (/TAS)
(56 more) |
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
|
66 |
Q9Y4Y9 (/TAS)
Q9Y4Y9 (/TAS)
Q9Y4Y9 (/TAS)
Q9Y4Y9 (/TAS)
Q9Y4Y9 (/TAS)
Q9Y4Y9 (/TAS)
Q9Y4Y9 (/TAS)
Q9Y4Y9 (/TAS)
Q9Y4Y9 (/TAS)
Q9Y4Y9 (/TAS)
(56 more) |
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
|
66 |
P62322 (/ISO)
P62322 (/ISO)
P62322 (/ISO)
P62322 (/ISO)
P62322 (/ISO)
P62322 (/ISO)
P62322 (/ISO)
P62322 (/ISO)
P62322 (/ISO)
P62322 (/ISO)
(56 more) |
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
|
66 |
Q9Y4Y9 (/TAS)
Q9Y4Y9 (/TAS)
Q9Y4Y9 (/TAS)
Q9Y4Y9 (/TAS)
Q9Y4Y9 (/TAS)
Q9Y4Y9 (/TAS)
Q9Y4Y9 (/TAS)
Q9Y4Y9 (/TAS)
Q9Y4Y9 (/TAS)
Q9Y4Y9 (/TAS)
(56 more) |
U4/U6 x U5 tri-snRNP complex GO:0046540
A ribonucleoprotein complex formed by the association of the U4/U6 and U5 small nuclear ribonucleoproteins.
|
66 |
Q9Y4Y9 (/IDA)
Q9Y4Y9 (/IDA)
Q9Y4Y9 (/IDA)
Q9Y4Y9 (/IDA)
Q9Y4Y9 (/IDA)
Q9Y4Y9 (/IDA)
Q9Y4Y9 (/IDA)
Q9Y4Y9 (/IDA)
Q9Y4Y9 (/IDA)
Q9Y4Y9 (/IDA)
(56 more) |
U4/U6 x U5 tri-snRNP complex GO:0046540
A ribonucleoprotein complex formed by the association of the U4/U6 and U5 small nuclear ribonucleoproteins.
|
66 |
P62322 (/ISO)
P62322 (/ISO)
P62322 (/ISO)
P62322 (/ISO)
P62322 (/ISO)
P62322 (/ISO)
P62322 (/ISO)
P62322 (/ISO)
P62322 (/ISO)
P62322 (/ISO)
(56 more) |
U2-type precatalytic spliceosome GO:0071005
A spliceosomal complex that is formed by the recruitment of the preassembled U4/U6.U5 tri-snRNP to the prespliceosome. Although all 5 snRNPs are present, the precatalytic spliceosome is catalytically inactive. The precatalytic spliceosome includes many proteins in addition to those found in the U1, U2 and U4/U6.U5 snRNPs.
|
66 |
Q9Y4Y9 (/IDA)
Q9Y4Y9 (/IDA)
Q9Y4Y9 (/IDA)
Q9Y4Y9 (/IDA)
Q9Y4Y9 (/IDA)
Q9Y4Y9 (/IDA)
Q9Y4Y9 (/IDA)
Q9Y4Y9 (/IDA)
Q9Y4Y9 (/IDA)
Q9Y4Y9 (/IDA)
(56 more) |
U2-type precatalytic spliceosome GO:0071005
A spliceosomal complex that is formed by the recruitment of the preassembled U4/U6.U5 tri-snRNP to the prespliceosome. Although all 5 snRNPs are present, the precatalytic spliceosome is catalytically inactive. The precatalytic spliceosome includes many proteins in addition to those found in the U1, U2 and U4/U6.U5 snRNPs.
|
66 |
P62322 (/ISO)
P62322 (/ISO)
P62322 (/ISO)
P62322 (/ISO)
P62322 (/ISO)
P62322 (/ISO)
P62322 (/ISO)
P62322 (/ISO)
P62322 (/ISO)
P62322 (/ISO)
(56 more) |
Lsm2-8 complex GO:0120115
A heteroheptameric, nuclear protein complex composed of Lsm2, Lsm3, Lsm4, Lsm5, Lsm6, Lsm7, and Lsm8, or orthologs thereof, that selectively binds to snRNAs, in particular the U6 snRNA, and also to unspliced transcripts localized within the nucleus.
|
66 |
Q9Y4Y9 (/IDA)
Q9Y4Y9 (/IDA)
Q9Y4Y9 (/IDA)
Q9Y4Y9 (/IDA)
Q9Y4Y9 (/IDA)
Q9Y4Y9 (/IDA)
Q9Y4Y9 (/IDA)
Q9Y4Y9 (/IDA)
Q9Y4Y9 (/IDA)
Q9Y4Y9 (/IDA)
(56 more) |
Lsm2-8 complex GO:0120115
A heteroheptameric, nuclear protein complex composed of Lsm2, Lsm3, Lsm4, Lsm5, Lsm6, Lsm7, and Lsm8, or orthologs thereof, that selectively binds to snRNAs, in particular the U6 snRNA, and also to unspliced transcripts localized within the nucleus.
|
66 |
P62322 (/ISO)
P62322 (/ISO)
P62322 (/ISO)
P62322 (/ISO)
P62322 (/ISO)
P62322 (/ISO)
P62322 (/ISO)
P62322 (/ISO)
P62322 (/ISO)
P62322 (/ISO)
(56 more) |
Spliceosomal complex GO:0005681
Any of a series of ribonucleoprotein complexes that contain snRNA(s) and small nuclear ribonucleoproteins (snRNPs), and are formed sequentially during the spliceosomal splicing of one or more substrate RNAs, and which also contain the RNA substrate(s) from the initial target RNAs of splicing, the splicing intermediate RNA(s), to the final RNA products. During cis-splicing, the initial target RNA is a single, contiguous RNA transcript, whether mRNA, snoRNA, etc., and the released products are a spliced RNA and an excised intron, generally as a lariat structure. During trans-splicing, there are two initial substrate RNAs, the spliced leader RNA and a pre-mRNA.
|
6 | Q9VRT7 (/ISS) Q9VRT7 (/ISS) Q9VRT7 (/ISS) Q9VRT7 (/ISS) Q9VRT7 (/ISS) Q9VRT7 (/ISS) |