The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was: waiting to be named.

Functional Families

Overview of the Structural Clusters (SC) and Functional Families within this CATH Superfamily. Clusters with a representative structure are represented by a filled circle.
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FunFam 22: U6 snRNA-associated Sm-like protein LSm8

Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.

There are 4 GO terms relating to "molecular function"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
60 O95777 (/IPI) O95777 (/IPI) O95777 (/IPI) O95777 (/IPI) O95777 (/IPI) O95777 (/IPI) O95777 (/IPI) O95777 (/IPI) O95777 (/IPI) O95777 (/IPI)
(50 more)
RNA binding GO:0003723
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
55 O95777 (/HDA) O95777 (/HDA) O95777 (/HDA) O95777 (/HDA) O95777 (/HDA) O95777 (/HDA) O95777 (/HDA) O95777 (/HDA) O95777 (/HDA) O95777 (/HDA)
(45 more)
U6 snRNA binding GO:0017070
Interacting selectively and non-covalently with the U6 small nuclear RNA (U6 snRNA).
55 O95777 (/NAS) O95777 (/NAS) O95777 (/NAS) O95777 (/NAS) O95777 (/NAS) O95777 (/NAS) O95777 (/NAS) O95777 (/NAS) O95777 (/NAS) O95777 (/NAS)
(45 more)
RNA binding GO:0003723
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
5 Q9W087 (/ISS) Q9W087 (/ISS) Q9W087 (/ISS) Q9W087 (/ISS) Q9W087 (/ISS)

There are 9 GO terms relating to "biological process"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
MRNA splicing, via spliceosome GO:0000398
The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.
170 Q3ZCE0 (/ISS) Q3ZCE0 (/ISS) Q3ZCE0 (/ISS) Q3ZCE0 (/ISS) Q3ZCE0 (/ISS) Q3ZCE0 (/ISS) Q3ZCE0 (/ISS) Q3ZCE0 (/ISS) Q3ZCE0 (/ISS) Q3ZCE0 (/ISS)
(160 more)
MRNA splicing, via spliceosome GO:0000398
The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.
55 O95777 (/IDA) O95777 (/IDA) O95777 (/IDA) O95777 (/IDA) O95777 (/IDA) O95777 (/IDA) O95777 (/IDA) O95777 (/IDA) O95777 (/IDA) O95777 (/IDA)
(45 more)
MRNA splicing, via spliceosome GO:0000398
The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.
55 Q6ZWM4 (/ISO) Q6ZWM4 (/ISO) Q6ZWM4 (/ISO) Q6ZWM4 (/ISO) Q6ZWM4 (/ISO) Q6ZWM4 (/ISO) Q6ZWM4 (/ISO) Q6ZWM4 (/ISO) Q6ZWM4 (/ISO) Q6ZWM4 (/ISO)
(45 more)
MRNA splicing, via spliceosome GO:0000398
The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.
55 O95777 (/TAS) O95777 (/TAS) O95777 (/TAS) O95777 (/TAS) O95777 (/TAS) O95777 (/TAS) O95777 (/TAS) O95777 (/TAS) O95777 (/TAS) O95777 (/TAS)
(45 more)
MRNA splicing, via spliceosome GO:0000398
The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.
5 Q9W087 (/IC) Q9W087 (/IC) Q9W087 (/IC) Q9W087 (/IC) Q9W087 (/IC)
MRNA processing GO:0006397
Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide.
2 A0A2R8QFM4 (/IMP) E7EZ02 (/IMP)
RNA splicing GO:0008380
The process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA.
2 A0A2R8QFM4 (/IMP) E7EZ02 (/IMP)
T cell differentiation GO:0030217
The process in which a precursor cell type acquires characteristics of a more mature T-cell. A T cell is a type of lymphocyte whose definin characteristic is the expression of a T cell receptor complex.
2 A0A2R8QFM4 (/IGI) E7EZ02 (/IGI)
T cell differentiation GO:0030217
The process in which a precursor cell type acquires characteristics of a more mature T-cell. A T cell is a type of lymphocyte whose definin characteristic is the expression of a T cell receptor complex.
2 A0A2R8QFM4 (/IMP) E7EZ02 (/IMP)

There are 17 GO terms relating to "cellular component"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
165 Q3ZCE0 (/ISS) Q3ZCE0 (/ISS) Q3ZCE0 (/ISS) Q3ZCE0 (/ISS) Q3ZCE0 (/ISS) Q3ZCE0 (/ISS) Q3ZCE0 (/ISS) Q3ZCE0 (/ISS) Q3ZCE0 (/ISS) Q3ZCE0 (/ISS)
(155 more)
U4/U6 x U5 tri-snRNP complex GO:0046540
A ribonucleoprotein complex formed by the association of the U4/U6 and U5 small nuclear ribonucleoproteins.
165 Q3ZCE0 (/ISS) Q3ZCE0 (/ISS) Q3ZCE0 (/ISS) Q3ZCE0 (/ISS) Q3ZCE0 (/ISS) Q3ZCE0 (/ISS) Q3ZCE0 (/ISS) Q3ZCE0 (/ISS) Q3ZCE0 (/ISS) Q3ZCE0 (/ISS)
(155 more)
U2-type precatalytic spliceosome GO:0071005
A spliceosomal complex that is formed by the recruitment of the preassembled U4/U6.U5 tri-snRNP to the prespliceosome. Although all 5 snRNPs are present, the precatalytic spliceosome is catalytically inactive. The precatalytic spliceosome includes many proteins in addition to those found in the U1, U2 and U4/U6.U5 snRNPs.
165 Q3ZCE0 (/ISS) Q3ZCE0 (/ISS) Q3ZCE0 (/ISS) Q3ZCE0 (/ISS) Q3ZCE0 (/ISS) Q3ZCE0 (/ISS) Q3ZCE0 (/ISS) Q3ZCE0 (/ISS) Q3ZCE0 (/ISS) Q3ZCE0 (/ISS)
(155 more)
Lsm2-8 complex GO:0120115
A heteroheptameric, nuclear protein complex composed of Lsm2, Lsm3, Lsm4, Lsm5, Lsm6, Lsm7, and Lsm8, or orthologs thereof, that selectively binds to snRNAs, in particular the U6 snRNA, and also to unspliced transcripts localized within the nucleus.
165 Q3ZCE0 (/ISS) Q3ZCE0 (/ISS) Q3ZCE0 (/ISS) Q3ZCE0 (/ISS) Q3ZCE0 (/ISS) Q3ZCE0 (/ISS) Q3ZCE0 (/ISS) Q3ZCE0 (/ISS) Q3ZCE0 (/ISS) Q3ZCE0 (/ISS)
(155 more)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
55 O95777 (/IDA) O95777 (/IDA) O95777 (/IDA) O95777 (/IDA) O95777 (/IDA) O95777 (/IDA) O95777 (/IDA) O95777 (/IDA) O95777 (/IDA) O95777 (/IDA)
(45 more)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
55 Q6ZWM4 (/ISO) Q6ZWM4 (/ISO) Q6ZWM4 (/ISO) Q6ZWM4 (/ISO) Q6ZWM4 (/ISO) Q6ZWM4 (/ISO) Q6ZWM4 (/ISO) Q6ZWM4 (/ISO) Q6ZWM4 (/ISO) Q6ZWM4 (/ISO)
(45 more)
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
55 O95777 (/TAS) O95777 (/TAS) O95777 (/TAS) O95777 (/TAS) O95777 (/TAS) O95777 (/TAS) O95777 (/TAS) O95777 (/TAS) O95777 (/TAS) O95777 (/TAS)
(45 more)
U4/U6 x U5 tri-snRNP complex GO:0046540
A ribonucleoprotein complex formed by the association of the U4/U6 and U5 small nuclear ribonucleoproteins.
55 O95777 (/IDA) O95777 (/IDA) O95777 (/IDA) O95777 (/IDA) O95777 (/IDA) O95777 (/IDA) O95777 (/IDA) O95777 (/IDA) O95777 (/IDA) O95777 (/IDA)
(45 more)
U4/U6 x U5 tri-snRNP complex GO:0046540
A ribonucleoprotein complex formed by the association of the U4/U6 and U5 small nuclear ribonucleoproteins.
55 Q6ZWM4 (/ISO) Q6ZWM4 (/ISO) Q6ZWM4 (/ISO) Q6ZWM4 (/ISO) Q6ZWM4 (/ISO) Q6ZWM4 (/ISO) Q6ZWM4 (/ISO) Q6ZWM4 (/ISO) Q6ZWM4 (/ISO) Q6ZWM4 (/ISO)
(45 more)
U2-type precatalytic spliceosome GO:0071005
A spliceosomal complex that is formed by the recruitment of the preassembled U4/U6.U5 tri-snRNP to the prespliceosome. Although all 5 snRNPs are present, the precatalytic spliceosome is catalytically inactive. The precatalytic spliceosome includes many proteins in addition to those found in the U1, U2 and U4/U6.U5 snRNPs.
55 O95777 (/IDA) O95777 (/IDA) O95777 (/IDA) O95777 (/IDA) O95777 (/IDA) O95777 (/IDA) O95777 (/IDA) O95777 (/IDA) O95777 (/IDA) O95777 (/IDA)
(45 more)
U2-type precatalytic spliceosome GO:0071005
A spliceosomal complex that is formed by the recruitment of the preassembled U4/U6.U5 tri-snRNP to the prespliceosome. Although all 5 snRNPs are present, the precatalytic spliceosome is catalytically inactive. The precatalytic spliceosome includes many proteins in addition to those found in the U1, U2 and U4/U6.U5 snRNPs.
55 Q6ZWM4 (/ISO) Q6ZWM4 (/ISO) Q6ZWM4 (/ISO) Q6ZWM4 (/ISO) Q6ZWM4 (/ISO) Q6ZWM4 (/ISO) Q6ZWM4 (/ISO) Q6ZWM4 (/ISO) Q6ZWM4 (/ISO) Q6ZWM4 (/ISO)
(45 more)
Lsm2-8 complex GO:0120115
A heteroheptameric, nuclear protein complex composed of Lsm2, Lsm3, Lsm4, Lsm5, Lsm6, Lsm7, and Lsm8, or orthologs thereof, that selectively binds to snRNAs, in particular the U6 snRNA, and also to unspliced transcripts localized within the nucleus.
55 O95777 (/IDA) O95777 (/IDA) O95777 (/IDA) O95777 (/IDA) O95777 (/IDA) O95777 (/IDA) O95777 (/IDA) O95777 (/IDA) O95777 (/IDA) O95777 (/IDA)
(45 more)
Lsm2-8 complex GO:0120115
A heteroheptameric, nuclear protein complex composed of Lsm2, Lsm3, Lsm4, Lsm5, Lsm6, Lsm7, and Lsm8, or orthologs thereof, that selectively binds to snRNAs, in particular the U6 snRNA, and also to unspliced transcripts localized within the nucleus.
55 Q6ZWM4 (/ISO) Q6ZWM4 (/ISO) Q6ZWM4 (/ISO) Q6ZWM4 (/ISO) Q6ZWM4 (/ISO) Q6ZWM4 (/ISO) Q6ZWM4 (/ISO) Q6ZWM4 (/ISO) Q6ZWM4 (/ISO) Q6ZWM4 (/ISO)
(45 more)
Spliceosomal complex GO:0005681
Any of a series of ribonucleoprotein complexes that contain snRNA(s) and small nuclear ribonucleoproteins (snRNPs), and are formed sequentially during the spliceosomal splicing of one or more substrate RNAs, and which also contain the RNA substrate(s) from the initial target RNAs of splicing, the splicing intermediate RNA(s), to the final RNA products. During cis-splicing, the initial target RNA is a single, contiguous RNA transcript, whether mRNA, snoRNA, etc., and the released products are a spliced RNA and an excised intron, generally as a lariat structure. During trans-splicing, there are two initial substrate RNAs, the spliced leader RNA and a pre-mRNA.
5 Q9W087 (/ISS) Q9W087 (/ISS) Q9W087 (/ISS) Q9W087 (/ISS) Q9W087 (/ISS)
U6 snRNP GO:0005688
A ribonucleoprotein complex that contains small nuclear RNA U6.
5 Q9W087 (/NAS) Q9W087 (/NAS) Q9W087 (/NAS) Q9W087 (/NAS) Q9W087 (/NAS)
Small nuclear ribonucleoprotein complex GO:0030532
A complex composed of RNA of the small nuclear RNA (snRNA) class and protein, found in the nucleus of a eukaryotic cell. These are typically named after the snRNA(s) they contain, e.g. U1 snRNP or U4/U6 snRNP. Many, but not all, of these complexes are involved in splicing of nuclear mRNAs.
5 Q9W087 (/ISS) Q9W087 (/ISS) Q9W087 (/ISS) Q9W087 (/ISS) Q9W087 (/ISS)
Precatalytic spliceosome GO:0071011
A spliceosomal complex that is formed by the recruitment of a preassembled U5-containing tri-snRNP to the prespliceosome. Although all 5 snRNPs are present, the precatalytic spliceosome is catalytically inactive. The precatalytic spliceosome includes many proteins in addition to those found in the associated snRNPs.
5 Q9W087 (/HDA) Q9W087 (/HDA) Q9W087 (/HDA) Q9W087 (/HDA) Q9W087 (/HDA)
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