The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was: waiting to be named.

Functional Families

Overview of the Structural Clusters (SC) and Functional Families within this CATH Superfamily. Clusters with a representative structure are represented by a filled circle.
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FunFam 2: Small nuclear ribonucleoprotein Sm D3

Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.

There are 18 GO terms relating to "molecular function"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Histone pre-mRNA DCP binding GO:0071208
Interacting selectively and non-covalently with the downstream cleavage product (DCP) generated by histone pre-mRNA 3'-end processing.
228 P62318 (/ISS) P62318 (/ISS) P62318 (/ISS) P62318 (/ISS) P62318 (/ISS) P62318 (/ISS) P62318 (/ISS) P62318 (/ISS) P62318 (/ISS) P62318 (/ISS)
(218 more)
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
124 P43321 (/IPI) P43321 (/IPI) P43321 (/IPI) P43321 (/IPI) P43321 (/IPI) P43321 (/IPI) P43321 (/IPI) P43321 (/IPI) P43321 (/IPI) P62318 (/IPI)
(114 more)
RNA binding GO:0003723
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
114 P62318 (/HDA) P62318 (/HDA) P62318 (/HDA) P62318 (/HDA) P62318 (/HDA) P62318 (/HDA) P62318 (/HDA) P62318 (/HDA) P62318 (/HDA) P62318 (/HDA)
(104 more)
RNA binding GO:0003723
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
114 P62318 (/IPI) P62318 (/IPI) P62318 (/IPI) P62318 (/IPI) P62318 (/IPI) P62318 (/IPI) P62318 (/IPI) P62318 (/IPI) P62318 (/IPI) P62318 (/IPI)
(104 more)
RNA binding GO:0003723
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
114 P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO)
(104 more)
Enzyme binding GO:0019899
Interacting selectively and non-covalently with any enzyme.
114 P62318 (/IPI) P62318 (/IPI) P62318 (/IPI) P62318 (/IPI) P62318 (/IPI) P62318 (/IPI) P62318 (/IPI) P62318 (/IPI) P62318 (/IPI) P62318 (/IPI)
(104 more)
Enzyme binding GO:0019899
Interacting selectively and non-covalently with any enzyme.
114 P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO)
(104 more)
Telomerase RNA binding GO:0070034
Interacting selectively and non-covalently with the telomerase RNA template.
114 P62318 (/IPI) P62318 (/IPI) P62318 (/IPI) P62318 (/IPI) P62318 (/IPI) P62318 (/IPI) P62318 (/IPI) P62318 (/IPI) P62318 (/IPI) P62318 (/IPI)
(104 more)
Telomerase RNA binding GO:0070034
Interacting selectively and non-covalently with the telomerase RNA template.
114 P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO)
(104 more)
Histone pre-mRNA DCP binding GO:0071208
Interacting selectively and non-covalently with the downstream cleavage product (DCP) generated by histone pre-mRNA 3'-end processing.
114 P62320 (/IDA) P62320 (/IDA) P62320 (/IDA) P62320 (/IDA) P62320 (/IDA) P62320 (/IDA) P62320 (/IDA) P62320 (/IDA) P62320 (/IDA) P62320 (/IDA)
(104 more)
U7 snRNA binding GO:0071209
Interacting selectively and non-covalently with the U7 small nuclear RNA (U7 snRNA).
114 P62318 (/IPI) P62318 (/IPI) P62318 (/IPI) P62318 (/IPI) P62318 (/IPI) P62318 (/IPI) P62318 (/IPI) P62318 (/IPI) P62318 (/IPI) P62318 (/IPI)
(104 more)
U7 snRNA binding GO:0071209
Interacting selectively and non-covalently with the U7 small nuclear RNA (U7 snRNA).
114 P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO)
(104 more)
U1 snRNP binding GO:1990446
Interacting selectively and non-covalently with any part of a U1 small nuclear ribonucleoprotein particle.
114 M0R907 (/IDA) M0R907 (/IDA) M0R907 (/IDA) M0R907 (/IDA) M0R907 (/IDA) M0R907 (/IDA) M0R907 (/IDA) M0R907 (/IDA) M0R907 (/IDA) M0R907 (/IDA)
(104 more)
U1 snRNP binding GO:1990446
Interacting selectively and non-covalently with any part of a U1 small nuclear ribonucleoprotein particle.
114 P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO)
(104 more)
MRNA binding GO:0003729
Interacting selectively and non-covalently with messenger RNA (mRNA), an intermediate molecule between DNA and protein. mRNA includes UTR and coding sequences, but does not contain introns.
9 P43321 (/IPI) P43321 (/IPI) P43321 (/IPI) P43321 (/IPI) P43321 (/IPI) P43321 (/IPI) P43321 (/IPI) P43321 (/IPI) P43321 (/IPI)
RNA binding GO:0003723
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
6 O44437 (/ISS) O44437 (/ISS) O44437 (/ISS) O44437 (/ISS) O44437 (/ISS) O44437 (/ISS)
MRNA binding GO:0003729
Interacting selectively and non-covalently with messenger RNA (mRNA), an intermediate molecule between DNA and protein. mRNA includes UTR and coding sequences, but does not contain introns.
1 Q9UUC6 (/ISS)
Extracellularly ATP-gated cation channel activity GO:0004931
Enables the transmembrane transfer of a cation by a channel that opens when ATP is bound by the channel complex or one of its constituent parts on the extracellular side of the plasma membrane.
1 B0V1I0 (/IDA)

There are 28 GO terms relating to "biological process"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
MRNA splicing, via spliceosome GO:0000398
The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.
234 O44437 (/ISS) O44437 (/ISS) O44437 (/ISS) O44437 (/ISS) O44437 (/ISS) O44437 (/ISS) P62320 (/ISS) P62320 (/ISS) P62320 (/ISS) P62320 (/ISS)
(224 more)
Spliceosomal snRNP assembly GO:0000387
The aggregation, arrangement and bonding together of one or more snRNA and multiple protein components to form a ribonucleoprotein complex that is involved in formation of the spliceosome.
228 P62320 (/ISS) P62320 (/ISS) P62320 (/ISS) P62320 (/ISS) P62320 (/ISS) P62320 (/ISS) P62320 (/ISS) P62320 (/ISS) P62320 (/ISS) P62320 (/ISS)
(218 more)
MRNA splicing, via spliceosome GO:0000398
The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.
120 O44437 (/IC) O44437 (/IC) O44437 (/IC) O44437 (/IC) O44437 (/IC) O44437 (/IC) P62318 (/IC) P62318 (/IC) P62318 (/IC) P62318 (/IC)
(110 more)
Spliceosomal snRNP assembly GO:0000387
The aggregation, arrangement and bonding together of one or more snRNA and multiple protein components to form a ribonucleoprotein complex that is involved in formation of the spliceosome.
114 P62318 (/IDA) P62318 (/IDA) P62318 (/IDA) P62318 (/IDA) P62318 (/IDA) P62318 (/IDA) P62318 (/IDA) P62318 (/IDA) P62318 (/IDA) P62318 (/IDA)
(104 more)
Spliceosomal snRNP assembly GO:0000387
The aggregation, arrangement and bonding together of one or more snRNA and multiple protein components to form a ribonucleoprotein complex that is involved in formation of the spliceosome.
114 P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO)
(104 more)
Spliceosomal snRNP assembly GO:0000387
The aggregation, arrangement and bonding together of one or more snRNA and multiple protein components to form a ribonucleoprotein complex that is involved in formation of the spliceosome.
114 P62318 (/TAS) P62318 (/TAS) P62318 (/TAS) P62318 (/TAS) P62318 (/TAS) P62318 (/TAS) P62318 (/TAS) P62318 (/TAS) P62318 (/TAS) P62318 (/TAS)
(104 more)
MRNA splicing, via spliceosome GO:0000398
The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.
114 P62318 (/IDA) P62318 (/IDA) P62318 (/IDA) P62318 (/IDA) P62318 (/IDA) P62318 (/IDA) P62318 (/IDA) P62318 (/IDA) P62318 (/IDA) P62318 (/IDA)
(104 more)
MRNA splicing, via spliceosome GO:0000398
The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.
114 P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO)
(104 more)
MRNA splicing, via spliceosome GO:0000398
The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.
114 P62318 (/TAS) P62318 (/TAS) P62318 (/TAS) P62318 (/TAS) P62318 (/TAS) P62318 (/TAS) P62318 (/TAS) P62318 (/TAS) P62318 (/TAS) P62318 (/TAS)
(104 more)
Termination of RNA polymerase II transcription GO:0006369
The process in which the synthesis of an RNA molecule by RNA polymerase II using a DNA template is completed.
114 P62318 (/TAS) P62318 (/TAS) P62318 (/TAS) P62318 (/TAS) P62318 (/TAS) P62318 (/TAS) P62318 (/TAS) P62318 (/TAS) P62318 (/TAS) P62318 (/TAS)
(104 more)
Protein methylation GO:0006479
The addition of a methyl group to a protein amino acid. A methyl group is derived from methane by the removal of a hydrogen atom.
114 P62318 (/IDA) P62318 (/IDA) P62318 (/IDA) P62318 (/IDA) P62318 (/IDA) P62318 (/IDA) P62318 (/IDA) P62318 (/IDA) P62318 (/IDA) P62318 (/IDA)
(104 more)
Protein methylation GO:0006479
The addition of a methyl group to a protein amino acid. A methyl group is derived from methane by the removal of a hydrogen atom.
114 P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO)
(104 more)
Histone mRNA metabolic process GO:0008334
The chemical reactions and pathways involving an mRNA encoding a histone.
114 P62318 (/TAS) P62318 (/TAS) P62318 (/TAS) P62318 (/TAS) P62318 (/TAS) P62318 (/TAS) P62318 (/TAS) P62318 (/TAS) P62318 (/TAS) P62318 (/TAS)
(104 more)
RNA splicing GO:0008380
The process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA.
114 P62318 (/TAS) P62318 (/TAS) P62318 (/TAS) P62318 (/TAS) P62318 (/TAS) P62318 (/TAS) P62318 (/TAS) P62318 (/TAS) P62318 (/TAS) P62318 (/TAS)
(104 more)
Import into nucleus GO:0051170
The directed movement of substances into the nucleus.
114 P62318 (/TAS) P62318 (/TAS) P62318 (/TAS) P62318 (/TAS) P62318 (/TAS) P62318 (/TAS) P62318 (/TAS) P62318 (/TAS) P62318 (/TAS) P62318 (/TAS)
(104 more)
MRNA splicing, via spliceosome GO:0000398
The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.
9 P43321 (/IPI) P43321 (/IPI) P43321 (/IPI) P43321 (/IPI) P43321 (/IPI) P43321 (/IPI) P43321 (/IPI) P43321 (/IPI) P43321 (/IPI)
Mitotic cell cycle GO:0000278
Progression through the phases of the mitotic cell cycle, the most common eukaryotic cell cycle, which canonically comprises four successive phases called G1, S, G2, and M and includes replication of the genome and the subsequent segregation of chromosomes into daughter cells. In some variant cell cycles nuclear replication or nuclear division may not be followed by cell division, or G1 and G2 phases may be absent.
6 O44437 (/HMP) O44437 (/HMP) O44437 (/HMP) O44437 (/HMP) O44437 (/HMP) O44437 (/HMP)
Central nervous system development GO:0007417
The process whose specific outcome is the progression of the central nervous system over time, from its formation to the mature structure. The central nervous system is the core nervous system that serves an integrating and coordinating function. In vertebrates it consists of the brain and spinal cord. In those invertebrates with a central nervous system it typically consists of a brain, cerebral ganglia and a nerve cord.
6 O44437 (/IMP) O44437 (/IMP) O44437 (/IMP) O44437 (/IMP) O44437 (/IMP) O44437 (/IMP)
Peripheral nervous system development GO:0007422
The process whose specific outcome is the progression of the peripheral nervous system over time, from its formation to the mature structure. The peripheral nervous system is one of the two major divisions of the nervous system. Nerves in the PNS connect the central nervous system (CNS) with sensory organs, other organs, muscles, blood vessels and glands.
6 O44437 (/IMP) O44437 (/IMP) O44437 (/IMP) O44437 (/IMP) O44437 (/IMP) O44437 (/IMP)
Muscle organ development GO:0007517
The process whose specific outcome is the progression of the muscle over time, from its formation to the mature structure. The muscle is an organ consisting of a tissue made up of various elongated cells that are specialized to contract and thus to produce movement and mechanical work.
6 O44437 (/IMP) O44437 (/IMP) O44437 (/IMP) O44437 (/IMP) O44437 (/IMP) O44437 (/IMP)
Neuron differentiation GO:0030182
The process in which a relatively unspecialized cell acquires specialized features of a neuron.
6 O44437 (/IMP) O44437 (/IMP) O44437 (/IMP) O44437 (/IMP) O44437 (/IMP) O44437 (/IMP)
Pole plasm oskar mRNA localization GO:0045451
Any process in which oskar mRNA is transported to, or maintained in, the oocyte pole plasm.
6 O44437 (/IMP) O44437 (/IMP) O44437 (/IMP) O44437 (/IMP) O44437 (/IMP) O44437 (/IMP)
Oogenesis GO:0048477
The complete process of formation and maturation of an ovum or female gamete from a primordial female germ cell. Examples of this process are found in Mus musculus and Drosophila melanogaster.
6 O44437 (/IMP) O44437 (/IMP) O44437 (/IMP) O44437 (/IMP) O44437 (/IMP) O44437 (/IMP)
Lymph gland development GO:0048542
The process whose specific outcome is the progression of the lymph gland over time, from its formation to the mature structure. The lymph gland is one of the sites of hemocyte differentiation. It consists of three to six bilaterally paired lobes that are attached to the cardioblasts during larval stages, and it degenerates during pupal stages.
6 O44437 (/IMP) O44437 (/IMP) O44437 (/IMP) O44437 (/IMP) O44437 (/IMP) O44437 (/IMP)
MRNA splicing, via spliceosome GO:0000398
The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.
4 Q9LM92 (/IMP) Q9LM92 (/IMP) Q9S7E6 (/IMP) Q9S7E6 (/IMP)
Developmental growth GO:0048589
The increase in size or mass of an entire organism, a part of an organism or a cell, where the increase in size or mass has the specific outcome of the progression of the organism over time from one condition to another.
2 Q9LM92 (/IMP) Q9LM92 (/IMP)
MRNA 5'-splice site recognition GO:0000395
Recognition of the intron 5'-splice site by components of the assembling spliceosome.
1 Q9UUC6 (/IC)
Cation transport GO:0006812
The directed movement of cations, atoms or small molecules with a net positive charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
1 B0V1I0 (/IDA)

There are 62 GO terms relating to "cellular component"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
344 M0R907 (/IDA) M0R907 (/IDA) M0R907 (/IDA) M0R907 (/IDA) M0R907 (/IDA) M0R907 (/IDA) M0R907 (/IDA) M0R907 (/IDA) M0R907 (/IDA) M0R907 (/IDA)
(334 more)
U1 snRNP GO:0005685
A ribonucleoprotein complex that contains small nuclear RNA U1.
238 M0R907 (/IDA) M0R907 (/IDA) M0R907 (/IDA) M0R907 (/IDA) M0R907 (/IDA) M0R907 (/IDA) M0R907 (/IDA) M0R907 (/IDA) M0R907 (/IDA) M0R907 (/IDA)
(228 more)
U4/U6 x U5 tri-snRNP complex GO:0046540
A ribonucleoprotein complex formed by the association of the U4/U6 and U5 small nuclear ribonucleoproteins.
229 P62320 (/ISS) P62320 (/ISS) P62320 (/ISS) P62320 (/ISS) P62320 (/ISS) P62320 (/ISS) P62320 (/ISS) P62320 (/ISS) P62320 (/ISS) P62320 (/ISS)
(219 more)
U1 snRNP GO:0005685
A ribonucleoprotein complex that contains small nuclear RNA U1.
228 P62320 (/ISS) P62320 (/ISS) P62320 (/ISS) P62320 (/ISS) P62320 (/ISS) P62320 (/ISS) P62320 (/ISS) P62320 (/ISS) P62320 (/ISS) P62320 (/ISS)
(218 more)
U4 snRNP GO:0005687
A ribonucleoprotein complex that contains small nuclear RNA U4.
228 P62320 (/ISS) P62320 (/ISS) P62320 (/ISS) P62320 (/ISS) P62320 (/ISS) P62320 (/ISS) P62320 (/ISS) P62320 (/ISS) P62320 (/ISS) P62320 (/ISS)
(218 more)
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
228 P62320 (/ISS) P62320 (/ISS) P62320 (/ISS) P62320 (/ISS) P62320 (/ISS) P62320 (/ISS) P62320 (/ISS) P62320 (/ISS) P62320 (/ISS) P62320 (/ISS)
(218 more)
Methylosome GO:0034709
A large (20 S) protein complex that possesses protein arginine methyltransferase activity and modifies specific arginines to dimethylarginines in the arginine- and glycine-rich domains of several spliceosomal Sm proteins, thereby targeting these proteins to the survival of motor neurons (SMN) complex for assembly into small nuclear ribonucleoprotein (snRNP) core particles. Proteins found in the methylosome include the methyltransferase JBP1 (PRMT5), pICln (CLNS1A), MEP50 (WDR77), and unmethylated forms of SM proteins that have RG domains.
228 P62320 (/ISS) P62320 (/ISS) P62320 (/ISS) P62320 (/ISS) P62320 (/ISS) P62320 (/ISS) P62320 (/ISS) P62320 (/ISS) P62320 (/ISS) P62320 (/ISS)
(218 more)
PICln-Sm protein complex GO:0034715
A protein complex that contains pICln (CLNS1A) and several Sm proteins, including SmD1, SmD2, SmE, SmF, and SmG.
228 P62320 (/ISS) P62320 (/ISS) P62320 (/ISS) P62320 (/ISS) P62320 (/ISS) P62320 (/ISS) P62320 (/ISS) P62320 (/ISS) P62320 (/ISS) P62320 (/ISS)
(218 more)
SMN-Sm protein complex GO:0034719
A protein complex formed by the association of several methylated Sm proteins with the SMN complex; the latter contains the survival motor neuron (SMN) protein and at least eight additional integral components, including the Gemin2-8 and unrip proteins; additional proteins, including galectin-1 and galectin-3, are also found in the SMN-SM complex. The SMN-Sm complex is involved in spliceosomal snRNP assembly in the cytoplasm.
228 P62320 (/ISS) P62320 (/ISS) P62320 (/ISS) P62320 (/ISS) P62320 (/ISS) P62320 (/ISS) P62320 (/ISS) P62320 (/ISS) P62320 (/ISS) P62320 (/ISS)
(218 more)
U2-type precatalytic spliceosome GO:0071005
A spliceosomal complex that is formed by the recruitment of the preassembled U4/U6.U5 tri-snRNP to the prespliceosome. Although all 5 snRNPs are present, the precatalytic spliceosome is catalytically inactive. The precatalytic spliceosome includes many proteins in addition to those found in the U1, U2 and U4/U6.U5 snRNPs.
228 P62320 (/ISS) P62320 (/ISS) P62320 (/ISS) P62320 (/ISS) P62320 (/ISS) P62320 (/ISS) P62320 (/ISS) P62320 (/ISS) P62320 (/ISS) P62320 (/ISS)
(218 more)
U2-type catalytic step 2 spliceosome GO:0071007
A spliceosomal complex that contains the U2, U5 and U6 snRNPs bound to a splicing intermediate in which the first catalytic cleavage of the 5' splice site has occurred. The precise subunit composition differs significantly from that of the catalytic step 1, or activated, spliceosome, and includes many proteins in addition to those found in the U2, U5 and U6 snRNPs.
228 P62320 (/ISS) P62320 (/ISS) P62320 (/ISS) P62320 (/ISS) P62320 (/ISS) P62320 (/ISS) P62320 (/ISS) P62320 (/ISS) P62320 (/ISS) P62320 (/ISS)
(218 more)
U4/U6 x U5 tri-snRNP complex GO:0046540
A ribonucleoprotein complex formed by the association of the U4/U6 and U5 small nuclear ribonucleoproteins.
123 P43321 (/IDA) P43321 (/IDA) P43321 (/IDA) P43321 (/IDA) P43321 (/IDA) P43321 (/IDA) P43321 (/IDA) P43321 (/IDA) P43321 (/IDA) P62318 (/IDA)
(113 more)
Small nuclear ribonucleoprotein complex GO:0030532
A complex composed of RNA of the small nuclear RNA (snRNA) class and protein, found in the nucleus of a eukaryotic cell. These are typically named after the snRNA(s) they contain, e.g. U1 snRNP or U4/U6 snRNP. Many, but not all, of these complexes are involved in splicing of nuclear mRNAs.
120 O44437 (/TAS) O44437 (/TAS) O44437 (/TAS) O44437 (/TAS) O44437 (/TAS) O44437 (/TAS) P62318 (/TAS) P62318 (/TAS) P62318 (/TAS) P62318 (/TAS)
(110 more)
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
116 P62318 (/IDA) P62318 (/IDA) P62318 (/IDA) P62318 (/IDA) P62318 (/IDA) P62318 (/IDA) P62318 (/IDA) P62318 (/IDA) P62318 (/IDA) P62318 (/IDA)
(106 more)
Nuclear body GO:0016604
Extra-nucleolar nuclear domains usually visualized by confocal microscopy and fluorescent antibodies to specific proteins.
116 P62318 (/IDA) P62318 (/IDA) P62318 (/IDA) P62318 (/IDA) P62318 (/IDA) P62318 (/IDA) P62318 (/IDA) P62318 (/IDA) P62318 (/IDA) P62318 (/IDA)
(106 more)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
114 P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO)
(104 more)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
114 P62323 (/ISS) P62323 (/ISS) P62323 (/ISS) P62323 (/ISS) P62323 (/ISS) P62323 (/ISS) P62323 (/ISS) P62323 (/ISS) P62323 (/ISS) P62323 (/ISS)
(104 more)
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
114 P62318 (/IDA) P62318 (/IDA) P62318 (/IDA) P62318 (/IDA) P62318 (/IDA) P62318 (/IDA) P62318 (/IDA) P62318 (/IDA) P62318 (/IDA) P62318 (/IDA)
(104 more)
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
114 P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO)
(104 more)
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
114 P62318 (/TAS) P62318 (/TAS) P62318 (/TAS) P62318 (/TAS) P62318 (/TAS) P62318 (/TAS) P62318 (/TAS) P62318 (/TAS) P62318 (/TAS) P62318 (/TAS)
(104 more)
Spliceosomal complex GO:0005681
Any of a series of ribonucleoprotein complexes that contain snRNA(s) and small nuclear ribonucleoproteins (snRNPs), and are formed sequentially during the spliceosomal splicing of one or more substrate RNAs, and which also contain the RNA substrate(s) from the initial target RNAs of splicing, the splicing intermediate RNA(s), to the final RNA products. During cis-splicing, the initial target RNA is a single, contiguous RNA transcript, whether mRNA, snoRNA, etc., and the released products are a spliced RNA and an excised intron, generally as a lariat structure. During trans-splicing, there are two initial substrate RNAs, the spliced leader RNA and a pre-mRNA.
114 P62318 (/TAS) P62318 (/TAS) P62318 (/TAS) P62318 (/TAS) P62318 (/TAS) P62318 (/TAS) P62318 (/TAS) P62318 (/TAS) P62318 (/TAS) P62318 (/TAS)
(104 more)
U7 snRNP GO:0005683
A ribonucleoprotein complex that contains the U7 snRNA and is required for the 3'-end processing of replication-dependent histone pre-mRNAs.
114 P62318 (/IDA) P62318 (/IDA) P62318 (/IDA) P62318 (/IDA) P62318 (/IDA) P62318 (/IDA) P62318 (/IDA) P62318 (/IDA) P62318 (/IDA) P62318 (/IDA)
(104 more)
U7 snRNP GO:0005683
A ribonucleoprotein complex that contains the U7 snRNA and is required for the 3'-end processing of replication-dependent histone pre-mRNAs.
114 P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO)
(104 more)
U7 snRNP GO:0005683
A ribonucleoprotein complex that contains the U7 snRNA and is required for the 3'-end processing of replication-dependent histone pre-mRNAs.
114 P62320 (/ISS) P62320 (/ISS) P62320 (/ISS) P62320 (/ISS) P62320 (/ISS) P62320 (/ISS) P62320 (/ISS) P62320 (/ISS) P62320 (/ISS) P62320 (/ISS)
(104 more)
U1 snRNP GO:0005685
A ribonucleoprotein complex that contains small nuclear RNA U1.
114 P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO)
(104 more)
U4 snRNP GO:0005687
A ribonucleoprotein complex that contains small nuclear RNA U4.
114 P62318 (/IDA) P62318 (/IDA) P62318 (/IDA) P62318 (/IDA) P62318 (/IDA) P62318 (/IDA) P62318 (/IDA) P62318 (/IDA) P62318 (/IDA) P62318 (/IDA)
(104 more)
U4 snRNP GO:0005687
A ribonucleoprotein complex that contains small nuclear RNA U4.
114 P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO)
(104 more)
U12-type spliceosomal complex GO:0005689
Any spliceosomal complex that forms during the splicing of a messenger RNA primary transcript to excise an intron; the series of U12-type spliceosomal complexes is involved in the splicing of the majority of introns that contain atypical AT-AC terminal dinucleotides, as well as other non-canonical introns. The entire splice site signal, not just the terminal dinucleotides, is involved in determining which spliceosome utilizes the site.
114 P62318 (/IDA) P62318 (/IDA) P62318 (/IDA) P62318 (/IDA) P62318 (/IDA) P62318 (/IDA) P62318 (/IDA) P62318 (/IDA) P62318 (/IDA) P62318 (/IDA)
(104 more)
U12-type spliceosomal complex GO:0005689
Any spliceosomal complex that forms during the splicing of a messenger RNA primary transcript to excise an intron; the series of U12-type spliceosomal complexes is involved in the splicing of the majority of introns that contain atypical AT-AC terminal dinucleotides, as well as other non-canonical introns. The entire splice site signal, not just the terminal dinucleotides, is involved in determining which spliceosome utilizes the site.
114 P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO)
(104 more)
Telomerase holoenzyme complex GO:0005697
Telomerase is a ribonucleoprotein enzyme complex, with a minimal catalytic core composed of a catalytic reverse transcriptase subunit and an RNA subunit that provides the template for telomeric DNA addition. In vivo, the holoenzyme complex often contains additional subunits.
114 P62318 (/IDA) P62318 (/IDA) P62318 (/IDA) P62318 (/IDA) P62318 (/IDA) P62318 (/IDA) P62318 (/IDA) P62318 (/IDA) P62318 (/IDA) P62318 (/IDA)
(104 more)
Telomerase holoenzyme complex GO:0005697
Telomerase is a ribonucleoprotein enzyme complex, with a minimal catalytic core composed of a catalytic reverse transcriptase subunit and an RNA subunit that provides the template for telomeric DNA addition. In vivo, the holoenzyme complex often contains additional subunits.
114 P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO)
(104 more)
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
114 P62320 (/IDA) P62320 (/IDA) P62320 (/IDA) P62320 (/IDA) P62320 (/IDA) P62320 (/IDA) P62320 (/IDA) P62320 (/IDA) P62320 (/IDA) P62320 (/IDA)
(104 more)
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
114 P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO)
(104 more)
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
114 P62318 (/TAS) P62318 (/TAS) P62318 (/TAS) P62318 (/TAS) P62318 (/TAS) P62318 (/TAS) P62318 (/TAS) P62318 (/TAS) P62318 (/TAS) P62318 (/TAS)
(104 more)
Nuclear body GO:0016604
Extra-nucleolar nuclear domains usually visualized by confocal microscopy and fluorescent antibodies to specific proteins.
114 P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO)
(104 more)
Methylosome GO:0034709
A large (20 S) protein complex that possesses protein arginine methyltransferase activity and modifies specific arginines to dimethylarginines in the arginine- and glycine-rich domains of several spliceosomal Sm proteins, thereby targeting these proteins to the survival of motor neurons (SMN) complex for assembly into small nuclear ribonucleoprotein (snRNP) core particles. Proteins found in the methylosome include the methyltransferase JBP1 (PRMT5), pICln (CLNS1A), MEP50 (WDR77), and unmethylated forms of SM proteins that have RG domains.
114 P62318 (/IDA) P62318 (/IDA) P62318 (/IDA) P62318 (/IDA) P62318 (/IDA) P62318 (/IDA) P62318 (/IDA) P62318 (/IDA) P62318 (/IDA) P62318 (/IDA)
(104 more)
Methylosome GO:0034709
A large (20 S) protein complex that possesses protein arginine methyltransferase activity and modifies specific arginines to dimethylarginines in the arginine- and glycine-rich domains of several spliceosomal Sm proteins, thereby targeting these proteins to the survival of motor neurons (SMN) complex for assembly into small nuclear ribonucleoprotein (snRNP) core particles. Proteins found in the methylosome include the methyltransferase JBP1 (PRMT5), pICln (CLNS1A), MEP50 (WDR77), and unmethylated forms of SM proteins that have RG domains.
114 P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO)
(104 more)
PICln-Sm protein complex GO:0034715
A protein complex that contains pICln (CLNS1A) and several Sm proteins, including SmD1, SmD2, SmE, SmF, and SmG.
114 P62318 (/IDA) P62318 (/IDA) P62318 (/IDA) P62318 (/IDA) P62318 (/IDA) P62318 (/IDA) P62318 (/IDA) P62318 (/IDA) P62318 (/IDA) P62318 (/IDA)
(104 more)
PICln-Sm protein complex GO:0034715
A protein complex that contains pICln (CLNS1A) and several Sm proteins, including SmD1, SmD2, SmE, SmF, and SmG.
114 P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO)
(104 more)
SMN-Sm protein complex GO:0034719
A protein complex formed by the association of several methylated Sm proteins with the SMN complex; the latter contains the survival motor neuron (SMN) protein and at least eight additional integral components, including the Gemin2-8 and unrip proteins; additional proteins, including galectin-1 and galectin-3, are also found in the SMN-SM complex. The SMN-Sm complex is involved in spliceosomal snRNP assembly in the cytoplasm.
114 P62318 (/IDA) P62318 (/IDA) P62318 (/IDA) P62318 (/IDA) P62318 (/IDA) P62318 (/IDA) P62318 (/IDA) P62318 (/IDA) P62318 (/IDA) P62318 (/IDA)
(104 more)
SMN-Sm protein complex GO:0034719
A protein complex formed by the association of several methylated Sm proteins with the SMN complex; the latter contains the survival motor neuron (SMN) protein and at least eight additional integral components, including the Gemin2-8 and unrip proteins; additional proteins, including galectin-1 and galectin-3, are also found in the SMN-SM complex. The SMN-Sm complex is involved in spliceosomal snRNP assembly in the cytoplasm.
114 P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO)
(104 more)
U4/U6 x U5 tri-snRNP complex GO:0046540
A ribonucleoprotein complex formed by the association of the U4/U6 and U5 small nuclear ribonucleoproteins.
114 P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO)
(104 more)
U2-type precatalytic spliceosome GO:0071005
A spliceosomal complex that is formed by the recruitment of the preassembled U4/U6.U5 tri-snRNP to the prespliceosome. Although all 5 snRNPs are present, the precatalytic spliceosome is catalytically inactive. The precatalytic spliceosome includes many proteins in addition to those found in the U1, U2 and U4/U6.U5 snRNPs.
114 P62318 (/IDA) P62318 (/IDA) P62318 (/IDA) P62318 (/IDA) P62318 (/IDA) P62318 (/IDA) P62318 (/IDA) P62318 (/IDA) P62318 (/IDA) P62318 (/IDA)
(104 more)
U2-type precatalytic spliceosome GO:0071005
A spliceosomal complex that is formed by the recruitment of the preassembled U4/U6.U5 tri-snRNP to the prespliceosome. Although all 5 snRNPs are present, the precatalytic spliceosome is catalytically inactive. The precatalytic spliceosome includes many proteins in addition to those found in the U1, U2 and U4/U6.U5 snRNPs.
114 P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO)
(104 more)
U2-type catalytic step 2 spliceosome GO:0071007
A spliceosomal complex that contains the U2, U5 and U6 snRNPs bound to a splicing intermediate in which the first catalytic cleavage of the 5' splice site has occurred. The precise subunit composition differs significantly from that of the catalytic step 1, or activated, spliceosome, and includes many proteins in addition to those found in the U2, U5 and U6 snRNPs.
114 P62318 (/IDA) P62318 (/IDA) P62318 (/IDA) P62318 (/IDA) P62318 (/IDA) P62318 (/IDA) P62318 (/IDA) P62318 (/IDA) P62318 (/IDA) P62318 (/IDA)
(104 more)
U2-type catalytic step 2 spliceosome GO:0071007
A spliceosomal complex that contains the U2, U5 and U6 snRNPs bound to a splicing intermediate in which the first catalytic cleavage of the 5' splice site has occurred. The precise subunit composition differs significantly from that of the catalytic step 1, or activated, spliceosome, and includes many proteins in addition to those found in the U2, U5 and U6 snRNPs.
114 P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO)
(104 more)
Catalytic step 2 spliceosome GO:0071013
A spliceosomal complex that contains three snRNPs, including U5, bound to a splicing intermediate in which the first catalytic cleavage of the 5' splice site has occurred. The precise subunit composition differs significantly from that of the catalytic step 1, or activated, spliceosome, and includes many proteins in addition to those found in the associated snRNPs.
114 P62318 (/IDA) P62318 (/IDA) P62318 (/IDA) P62318 (/IDA) P62318 (/IDA) P62318 (/IDA) P62318 (/IDA) P62318 (/IDA) P62318 (/IDA) P62318 (/IDA)
(104 more)
Catalytic step 2 spliceosome GO:0071013
A spliceosomal complex that contains three snRNPs, including U5, bound to a splicing intermediate in which the first catalytic cleavage of the 5' splice site has occurred. The precise subunit composition differs significantly from that of the catalytic step 1, or activated, spliceosome, and includes many proteins in addition to those found in the associated snRNPs.
114 P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO) P62320 (/ISO)
(104 more)
Commitment complex GO:0000243
A spliceosomal complex that is formed by association of the U1 snRNP with the 5' splice site of an unspliced intron in an RNA transcript.
9 P43321 (/IPI) P43321 (/IPI) P43321 (/IPI) P43321 (/IPI) P43321 (/IPI) P43321 (/IPI) P43321 (/IPI) P43321 (/IPI) P43321 (/IPI)
U5 snRNP GO:0005682
A ribonucleoprotein complex that contains small nuclear RNA U5.
9 P43321 (/IDA) P43321 (/IDA) P43321 (/IDA) P43321 (/IDA) P43321 (/IDA) P43321 (/IDA) P43321 (/IDA) P43321 (/IDA) P43321 (/IDA)
U2-type prespliceosome GO:0071004
A spliceosomal complex that is formed by association of the 5' splice site with the U1 snRNP, while the branch point sequence is recognized by the U2 snRNP. The prespliceosome includes many proteins in addition to those found in the U1 and U2 snRNPs. Commitment to a given pair of 5' and 3' splice sites occurs at the time of prespliceosome formation.
9 P43321 (/IDA) P43321 (/IDA) P43321 (/IDA) P43321 (/IDA) P43321 (/IDA) P43321 (/IDA) P43321 (/IDA) P43321 (/IDA) P43321 (/IDA)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
7 O44437 (/HDA) O44437 (/HDA) O44437 (/HDA) O44437 (/HDA) O44437 (/HDA) O44437 (/HDA) Q9UUC6 (/HDA)
Pole plasm GO:0045495
Differentiated cytoplasm associated with a pole (animal, vegetal, anterior, or posterior) of an oocyte, egg or early embryo.
6 O44437 (/IDA) O44437 (/IDA) O44437 (/IDA) O44437 (/IDA) O44437 (/IDA) O44437 (/IDA)
Precatalytic spliceosome GO:0071011
A spliceosomal complex that is formed by the recruitment of a preassembled U5-containing tri-snRNP to the prespliceosome. Although all 5 snRNPs are present, the precatalytic spliceosome is catalytically inactive. The precatalytic spliceosome includes many proteins in addition to those found in the associated snRNPs.
6 O44437 (/HDA) O44437 (/HDA) O44437 (/HDA) O44437 (/HDA) O44437 (/HDA) O44437 (/HDA)
Catalytic step 2 spliceosome GO:0071013
A spliceosomal complex that contains three snRNPs, including U5, bound to a splicing intermediate in which the first catalytic cleavage of the 5' splice site has occurred. The precise subunit composition differs significantly from that of the catalytic step 1, or activated, spliceosome, and includes many proteins in addition to those found in the associated snRNPs.
6 O44437 (/HDA) O44437 (/HDA) O44437 (/HDA) O44437 (/HDA) O44437 (/HDA) O44437 (/HDA)
Nucleolus GO:0005730
A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.
4 Q9LM92 (/IDA) Q9LM92 (/IDA) Q9S7E6 (/IDA) Q9S7E6 (/IDA)
Commitment complex GO:0000243
A spliceosomal complex that is formed by association of the U1 snRNP with the 5' splice site of an unspliced intron in an RNA transcript.
1 Q9UUC6 (/ISS)
Spliceosomal complex GO:0005681
Any of a series of ribonucleoprotein complexes that contain snRNA(s) and small nuclear ribonucleoproteins (snRNPs), and are formed sequentially during the spliceosomal splicing of one or more substrate RNAs, and which also contain the RNA substrate(s) from the initial target RNAs of splicing, the splicing intermediate RNA(s), to the final RNA products. During cis-splicing, the initial target RNA is a single, contiguous RNA transcript, whether mRNA, snoRNA, etc., and the released products are a spliced RNA and an excised intron, generally as a lariat structure. During trans-splicing, there are two initial substrate RNAs, the spliced leader RNA and a pre-mRNA.
1 Q9UUC6 (/IDA)
U2 snRNP GO:0005686
A ribonucleoprotein complex that contains small nuclear RNA U2.
1 Q9UUC6 (/IDA)
P granule GO:0043186
A small cytoplasmic, non-membranous RNA/protein complex aggregates in the primordial germ cells of many higher eukaryotes.
1 Q17348 (/IDA)
U2-type prespliceosome GO:0071004
A spliceosomal complex that is formed by association of the 5' splice site with the U1 snRNP, while the branch point sequence is recognized by the U2 snRNP. The prespliceosome includes many proteins in addition to those found in the U1 and U2 snRNPs. Commitment to a given pair of 5' and 3' splice sites occurs at the time of prespliceosome formation.
1 Q9UUC6 (/ISO)
Post-mRNA release spliceosomal complex GO:0071014
A spliceosomal complex that is formed following the release of the spliced product from the post-spliceosomal complex and contains the excised intron and three snRNPs, including U5.
1 Q9UUC6 (/IDA)
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