The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was named:
"Nascent polypeptide-associated complex domain
".
FunFam 1: Transcription factor BTF3 homolog
Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.
There are 3 GO terms relating to "molecular function"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
|
18 |
P20290 (/IPI)
P20290 (/IPI)
P20290 (/IPI)
P20290 (/IPI)
Q02642 (/IPI)
Q02642 (/IPI)
Q02642 (/IPI)
Q02642 (/IPI)
Q02642 (/IPI)
Q02642 (/IPI)
(8 more) |
Unfolded protein binding GO:0051082
Interacting selectively and non-covalently with an unfolded protein.
|
17 |
P40314 (/IMP)
P40314 (/IMP)
P40314 (/IMP)
P40314 (/IMP)
P40314 (/IMP)
P40314 (/IMP)
P40314 (/IMP)
P40314 (/IMP)
Q02642 (/IMP)
Q02642 (/IMP)
(7 more) |
RNA binding GO:0003723
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
|
4 | P20290 (/HDA) P20290 (/HDA) P20290 (/HDA) P20290 (/HDA) |
There are 17 GO terms relating to "biological process"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Posttranslational protein targeting to endoplasmic reticulum membrane GO:0006620
The targeting of proteins to a membrane that occurs after their translation. Some secretory proteins exhibit posttranslational transport into the endoplasmic reticulum (ER) lumen: they are synthesized in their entirety on free cytosolic ribosomes and then released into the cytosol, where they are bound by chaperones which keep them in an unfolded state, and subsequently are translocated across the ER membrane.
|
17 |
P40314 (/IGI)
P40314 (/IGI)
P40314 (/IGI)
P40314 (/IGI)
P40314 (/IGI)
P40314 (/IGI)
P40314 (/IGI)
P40314 (/IGI)
Q02642 (/IGI)
Q02642 (/IGI)
(7 more) |
'de novo' cotranslational protein folding GO:0051083
The process of assisting in the correct noncovalent assembly of the ribosome-bound nascent chains of a multidomain protein whilst other parts of the protein are still being translated.
|
17 |
P40314 (/IPI)
P40314 (/IPI)
P40314 (/IPI)
P40314 (/IPI)
P40314 (/IPI)
P40314 (/IPI)
P40314 (/IPI)
P40314 (/IPI)
Q02642 (/IPI)
Q02642 (/IPI)
(7 more) |
Macroautophagy GO:0016236
The major inducible pathway for the general turnover of cytoplasmic constituents in eukaryotic cells, it is also responsible for the degradation of active cytoplasmic enzymes and organelles during nutrient starvation. Macroautophagy involves the formation of double-membrane-bounded autophagosomes which enclose the cytoplasmic constituent targeted for degradation in a membrane-bounded structure. Autophagosomes then fuse with a lysosome (or vacuole) releasing single-membrane-bounded autophagic bodies that are then degraded within the lysosome (or vacuole). Some types of macroautophagy, e.g. pexophagy, mitophagy, involve selective targeting of the targets to be degraded.
|
9 | Q02642 (/IMP) Q02642 (/IMP) Q02642 (/IMP) Q02642 (/IMP) Q02642 (/IMP) Q02642 (/IMP) Q02642 (/IMP) Q02642 (/IMP) Q02642 (/IMP) |
Transcription by RNA polymerase II GO:0006366
The synthesis of RNA from a DNA template by RNA polymerase II (RNAP II), originating at an RNA polymerase II promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs).
|
4 | P20290 (/TAS) P20290 (/TAS) P20290 (/TAS) P20290 (/TAS) |
Response to salt stress GO:0009651
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment.
|
4 | Q9CAT7 (/IEP) Q9CAT7 (/IEP) Q9CAT7 (/IEP) Q9SMW7 (/IEP) |
Regulation of pole plasm oskar mRNA localization GO:0007317
Any process that modulates the frequency, rate or extent of the process in which oskar mRNA is transported to, or maintained in, the oocyte pole plasm.
|
2 | Q7KM15 (/IMP) Q9U9Q7 (/IMP) |
Intracellular mRNA localization involved in anterior/posterior axis specification GO:0060811
Any process in which mRNA is transported to, or maintained in, a specific location within the oocyte and/or syncytial embryo that contributes to the specification of the anterior/posterior axis.
|
2 | Q7KM15 (/IMP) Q9U9Q7 (/IMP) |
Regulation of establishment of protein localization GO:0070201
Any process that modulates the frequency, rate or extent of the directed movement of a protein to a specific location.
|
2 | Q7KM15 (/IMP) Q9U9Q7 (/IMP) |
Embryonic development via the syncytial blastoderm GO:0001700
The process whose specific outcome is the progression of the embryo over time, from zygote formation through syncytial blastoderm to the hatching of the first instar larva. An example of this process is found in Drosophila melanogaster.
|
1 | Q9U9Q7 (/IMP) |
In utero embryonic development GO:0001701
The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth. An example of this process is found in Mus musculus.
|
1 | Q64152 (/IMP) |
Neural crest cell migration GO:0001755
The characteristic movement of cells from the dorsal ridge of the neural tube to a variety of locations in a vertebrate embryo.
|
1 | Q5XGK2 (/IMP) |
Cotranslational protein targeting to membrane GO:0006613
The targeting of proteins to a membrane that occurs during translation. The transport of most secretory proteins, particularly those with more than 100 amino acids, into the endoplasmic reticulum lumen occurs in this manner, as does the import of some proteins into mitochondria.
|
1 | Q92371 (/ISO) |
Pole plasm protein localization GO:0007318
Any process in which a protein is transported to, or maintained in, the oocyte pole plasm. An example of this is found in Drosophila melanogaster.
|
1 | Q9U9Q7 (/IMP) |
Embryo development ending in birth or egg hatching GO:0009792
The process whose specific outcome is the progression of an embryo over time, from zygote formation until the end of the embryonic life stage. The end of the embryonic life stage is organism-specific and may be somewhat arbitrary; for mammals it is usually considered to be birth, for insects the hatching of the first instar larva from the eggshell.
|
1 | Q18885 (/IMP) |
Protein transport GO:0015031
The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
|
1 | Q9U9Q7 (/TAS) |
Negative regulation of apoptotic process GO:0043066
Any process that stops, prevents, or reduces the frequency, rate or extent of cell death by apoptotic process.
|
1 | Q18885 (/IMP) |
'de novo' cotranslational protein folding GO:0051083
The process of assisting in the correct noncovalent assembly of the ribosome-bound nascent chains of a multidomain protein whilst other parts of the protein are still being translated.
|
1 | Q92371 (/ISO) |
There are 11 GO terms relating to "cellular component"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Nascent polypeptide-associated complex GO:0005854
A heterodimeric protein complex that can reversibly bind to ribosomes, and is located in direct proximity to newly synthesized polypeptide chains as they emerge from the ribosome.
|
17 |
P40314 (/IDA)
P40314 (/IDA)
P40314 (/IDA)
P40314 (/IDA)
P40314 (/IDA)
P40314 (/IDA)
P40314 (/IDA)
P40314 (/IDA)
Q02642 (/IDA)
Q02642 (/IDA)
(7 more) |
CCR4-NOT core complex GO:0030015
The core of the CCR4-NOT complex. In Saccharomyces the CCR4-NOT core complex comprises Ccr4p, Caf1p, Caf40p, Caf130p, Not1p, Not2p, Not3p, Not4p, and Not5p.
|
8 | P40314 (/IPI) P40314 (/IPI) P40314 (/IPI) P40314 (/IPI) P40314 (/IPI) P40314 (/IPI) P40314 (/IPI) P40314 (/IPI) |
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
|
7 | D6RDG3 (/IDA) D6RDG3 (/IDA) D6RDG3 (/IDA) P20290 (/IDA) P20290 (/IDA) P20290 (/IDA) P20290 (/IDA) |
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
4 | P20290 (/ISS) P20290 (/ISS) P20290 (/ISS) P20290 (/ISS) |
Nascent polypeptide-associated complex GO:0005854
A heterodimeric protein complex that can reversibly bind to ribosomes, and is located in direct proximity to newly synthesized polypeptide chains as they emerge from the ribosome.
|
2 | Q7KM15 (/ISS) Q9U9Q7 (/ISS) |
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
1 | Q5XGK2 (/IDA) |
Mitochondrion GO:0005739
A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
|
1 | Q18885 (/IDA) |
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
|
1 | Q92371 (/HDA) |
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
|
1 | Q64152 (/ISO) |
Nascent polypeptide-associated complex GO:0005854
A heterodimeric protein complex that can reversibly bind to ribosomes, and is located in direct proximity to newly synthesized polypeptide chains as they emerge from the ribosome.
|
1 | Q92371 (/ISO) |
Polysomal ribosome GO:0042788
A ribosome bound to mRNA that forms part of a polysome.
|
1 | Q92371 (/IDA) |