The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was: waiting to be named.
FunFam 2: RTR1p CTD phosphatase
Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.
There are 1 GO terms relating to "molecular function"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
| GO Term | Annotations | Evidence |
|---|---|---|
|
RNA polymerase II CTD heptapeptide repeat phosphatase activity GO:0008420
Catalysis of the reaction: phospho-(DNA-directed RNA polymerase II) + H2O = (DNA-directed RNA polymerase II) + phosphate.
|
8 | P40084 (/IDA) P40084 (/IDA) P40084 (/IDA) P40084 (/IDA) P40084 (/IDA) P40084 (/IDA) P40084 (/IDA) P40084 (/IDA) |
There are 5 GO terms relating to "biological process"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
| GO Term | Annotations | Evidence |
|---|---|---|
|
Transcription by RNA polymerase II GO:0006366
The synthesis of RNA from a DNA template by RNA polymerase II (RNAP II), originating at an RNA polymerase II promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs).
|
8 | P40084 (/IGI) P40084 (/IGI) P40084 (/IGI) P40084 (/IGI) P40084 (/IGI) P40084 (/IGI) P40084 (/IGI) P40084 (/IGI) |
|
Transcription by RNA polymerase II GO:0006366
The synthesis of RNA from a DNA template by RNA polymerase II (RNAP II), originating at an RNA polymerase II promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs).
|
8 | P40084 (/IMP) P40084 (/IMP) P40084 (/IMP) P40084 (/IMP) P40084 (/IMP) P40084 (/IMP) P40084 (/IMP) P40084 (/IMP) |
|
Transcription by RNA polymerase II GO:0006366
The synthesis of RNA from a DNA template by RNA polymerase II (RNAP II), originating at an RNA polymerase II promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs).
|
8 | P40084 (/IPI) P40084 (/IPI) P40084 (/IPI) P40084 (/IPI) P40084 (/IPI) P40084 (/IPI) P40084 (/IPI) P40084 (/IPI) |
|
Dephosphorylation of RNA polymerase II C-terminal domain GO:0070940
The process of removing a phosphate group from an amino acid residue in the C-terminal domain of RNA polymerase II. Some dephosphorylation occurs during transcription while some may occur after the enzyme is released from the template in order to prepare it for the beginning of the transcription cycle again. RNA polymerase II with little or no phosphorylation is referred to as the hypophosphorylated or II(A) form.
|
8 | P40084 (/IDA) P40084 (/IDA) P40084 (/IDA) P40084 (/IDA) P40084 (/IDA) P40084 (/IDA) P40084 (/IDA) P40084 (/IDA) |
|
Dephosphorylation of RNA polymerase II C-terminal domain GO:0070940
The process of removing a phosphate group from an amino acid residue in the C-terminal domain of RNA polymerase II. Some dephosphorylation occurs during transcription while some may occur after the enzyme is released from the template in order to prepare it for the beginning of the transcription cycle again. RNA polymerase II with little or no phosphorylation is referred to as the hypophosphorylated or II(A) form.
|
8 | P40084 (/IMP) P40084 (/IMP) P40084 (/IMP) P40084 (/IMP) P40084 (/IMP) P40084 (/IMP) P40084 (/IMP) P40084 (/IMP) |
There are 3 GO terms relating to "cellular component"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
| GO Term | Annotations | Evidence |
|---|---|---|
|
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
8 | P40084 (/IDA) P40084 (/IDA) P40084 (/IDA) P40084 (/IDA) P40084 (/IDA) P40084 (/IDA) P40084 (/IDA) P40084 (/IDA) |
|
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
|
8 | P40084 (/HDA) P40084 (/HDA) P40084 (/HDA) P40084 (/HDA) P40084 (/HDA) P40084 (/HDA) P40084 (/HDA) P40084 (/HDA) |
|
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
|
8 | P40084 (/IDA) P40084 (/IDA) P40084 (/IDA) P40084 (/IDA) P40084 (/IDA) P40084 (/IDA) P40084 (/IDA) P40084 (/IDA) |