The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was: waiting to be named.

Functional Families

Overview of the Structural Clusters (SC) and Functional Families within this CATH Superfamily. Clusters with a representative structure are represented by a filled circle.
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FunFam 7: DNA-directed RNA polymerase II subunit RPB4

Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.

There are 2 GO terms relating to "molecular function"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
9 P20433 (/IPI) P20433 (/IPI) P20433 (/IPI) P20433 (/IPI) P20433 (/IPI) P20433 (/IPI) P20433 (/IPI) P20433 (/IPI) P20433 (/IPI)
Translation initiation factor binding GO:0031369
Interacting selectively and non-covalently with a translation initiation factor, any polypeptide factor involved in the initiation of ribosome-mediated translation.
9 P20433 (/IPI) P20433 (/IPI) P20433 (/IPI) P20433 (/IPI) P20433 (/IPI) P20433 (/IPI) P20433 (/IPI) P20433 (/IPI) P20433 (/IPI)

There are 6 GO terms relating to "biological process"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay GO:0000288
A major pathway of degradation of nuclear-transcribed mRNAs that proceeds through a series of ordered steps that includes poly(A) tail shortening and that can regulate mRNA stability.
9 P20433 (/IMP) P20433 (/IMP) P20433 (/IMP) P20433 (/IMP) P20433 (/IMP) P20433 (/IMP) P20433 (/IMP) P20433 (/IMP) P20433 (/IMP)
Transcription by RNA polymerase II GO:0006366
The synthesis of RNA from a DNA template by RNA polymerase II (RNAP II), originating at an RNA polymerase II promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs).
9 P20433 (/IMP) P20433 (/IMP) P20433 (/IMP) P20433 (/IMP) P20433 (/IMP) P20433 (/IMP) P20433 (/IMP) P20433 (/IMP) P20433 (/IMP)
Transcription initiation from RNA polymerase II promoter GO:0006367
Any process involved in the assembly of the RNA polymerase II preinitiation complex (PIC) at an RNA polymerase II promoter region of a DNA template, resulting in the subsequent synthesis of RNA from that promoter. The initiation phase includes PIC assembly and the formation of the first few bonds in the RNA chain, including abortive initiation, which occurs when the first few nucleotides are repeatedly synthesized and then released. Promoter clearance, or release, is the transition between the initiation and elongation phases of transcription.
9 P20433 (/IDA) P20433 (/IDA) P20433 (/IDA) P20433 (/IDA) P20433 (/IDA) P20433 (/IDA) P20433 (/IDA) P20433 (/IDA) P20433 (/IDA)
MRNA export from nucleus in response to heat stress GO:0031990
The directed movement of mRNA from the nucleus to the cytoplasm during a heat stimulus, a temperature stimulus above the optimal temperature for the organism; in particular, a process that enables an organism withstand exposure to temperatures that would otherwise lethally impair poly(A)+ mRNA-nucleus export.
9 P20433 (/IMP) P20433 (/IMP) P20433 (/IMP) P20433 (/IMP) P20433 (/IMP) P20433 (/IMP) P20433 (/IMP) P20433 (/IMP) P20433 (/IMP)
Recruitment of 3'-end processing factors to RNA polymerase II holoenzyme complex GO:0034402
The process in which proteins required for 3'-end transcript processing become associated with the RNA polymerase II holoenzyme complex and the 3' end of a transcript.
9 P20433 (/IMP) P20433 (/IMP) P20433 (/IMP) P20433 (/IMP) P20433 (/IMP) P20433 (/IMP) P20433 (/IMP) P20433 (/IMP) P20433 (/IMP)
Positive regulation of translational initiation GO:0045948
Any process that activates or increases the frequency, rate or extent of translational initiation.
9 P20433 (/IMP) P20433 (/IMP) P20433 (/IMP) P20433 (/IMP) P20433 (/IMP) P20433 (/IMP) P20433 (/IMP) P20433 (/IMP) P20433 (/IMP)

There are 4 GO terms relating to "cellular component"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
P-body GO:0000932
A focus in the cytoplasm where mRNAs may become inactivated by decapping or some other mechanism. Protein and RNA localized to these foci are involved in mRNA degradation, nonsense-mediated mRNA decay (NMD), translational repression, and RNA-mediated gene silencing.
9 P20433 (/IDA) P20433 (/IDA) P20433 (/IDA) P20433 (/IDA) P20433 (/IDA) P20433 (/IDA) P20433 (/IDA) P20433 (/IDA) P20433 (/IDA)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
9 P20433 (/IDA) P20433 (/IDA) P20433 (/IDA) P20433 (/IDA) P20433 (/IDA) P20433 (/IDA) P20433 (/IDA) P20433 (/IDA) P20433 (/IDA)
RNA polymerase II, core complex GO:0005665
RNA polymerase II, one of three nuclear DNA-directed RNA polymerases found in all eukaryotes, is a multisubunit complex; typically it produces mRNAs, snoRNAs, and some of the snRNAs. Two large subunits comprise the most conserved portion including the catalytic site and share similarity with other eukaryotic and bacterial multisubunit RNA polymerases. The largest subunit of RNA polymerase II contains an essential carboxyl-terminal domain (CTD) composed of a variable number of heptapeptide repeats (YSPTSPS). The remainder of the complex is composed of smaller subunits (generally ten or more), some of which are also found in RNA polymerases I and III. Although the core is competent to mediate ribonucleic acid synthesis, it requires additional factors to select the appropriate template.
9 P20433 (/IDA) P20433 (/IDA) P20433 (/IDA) P20433 (/IDA) P20433 (/IDA) P20433 (/IDA) P20433 (/IDA) P20433 (/IDA) P20433 (/IDA)
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
9 P20433 (/IDA) P20433 (/IDA) P20433 (/IDA) P20433 (/IDA) P20433 (/IDA) P20433 (/IDA) P20433 (/IDA) P20433 (/IDA) P20433 (/IDA)
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