The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was named:
"Farnesyl Diphosphate Synthase
".
FunFam 7: Isoprene synthase, chloroplastic
Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.
There are 30 GO terms relating to "molecular function"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Sesquiterpene synthase activity GO:0010334
Catalysis of the reaction: trans,trans-farnesyl diphosphate = a sesquiterpene + diphosphate. Sesquiterpenes are terpenes containing three isoprene units, i.e. 15 carbons.
|
24 |
B2KSJ5 (/IDA)
B2KSJ5 (/IDA)
B3TPQ6 (/IDA)
B5A435 (/IDA)
B9RXW0 (/IDA)
B9SBU9 (/IDA)
B9T536 (/IDA)
D0VMR6 (/IDA)
D0VMR7 (/IDA)
D0VMR8 (/IDA)
(14 more) |
Terpene synthase activity GO:0010333
Catalysis of the formation of cyclic terpenes through the cyclization of linear terpenes (e.g. isopentenyl-PP, geranyl-PP, farnesyl-PP and geranylgeranyl-PP) containing varying numbers of isoprene units.
|
18 |
A0A178U9Y5 (/IDA)
A0A1D6EFT8 (/IDA)
A0A291LSD6 (/IDA)
B2C4D0 (/IDA)
B3TPQ7 (/IDA)
B5A434 (/IDA)
E2E2P0 (/IDA)
Q1EG72 (/IDA)
Q5GJ59 (/IDA)
Q5GJ60 (/IDA)
(8 more) |
Magnesium ion binding GO:0000287
Interacting selectively and non-covalently with magnesium (Mg) ions.
|
9 | E2E2N7 (/IDA) E2E2P0 (/IDA) O81192 (/IDA) Q50L36 (/IDA) Q5GJ59 (/IDA) Q8GUE4 (/IDA) Q8H2B4 (/IDA) Q8L5K4 (/IDA) Q9SPN0 (/IDA) |
(+)-delta-cadinene synthase activity GO:0047461
Catalysis of the reaction: 2-trans,6-trans-farnesyl diphosphate = diphosphate + (+)-delta-cadinene.
|
4 | B9S9Z3 (/IDA) Q39760 (/IDA) Q39760 (/IDA) Q9LKN1 (/IDA) |
Manganese ion binding GO:0030145
Interacting selectively and non-covalently with manganese (Mn) ions.
|
3 | Q6USK1 (/IDA) Q8GUE4 (/IDA) Q8H2B4 (/IDA) |
Germacrene-A synthase activity GO:0034005
Catalysis of the reaction: 2-trans,6-trans-farnesyl diphosphate = (+)-(R)-germacrene A + diphosphate.
|
3 | Q8LSC2 (/IDA) Q8LSC2 (/IDA) Q8LSC3 (/IDA) |
R-linalool synthase activity GO:0034008
Catalysis of the reaction: geranyl diphosphate + H(2)O = (R)-linalool + diphosphate.
|
3 | Q8H2B4 (/IDA) Q9SPN0 (/IDA) Q9SPN1 (/IDA) |
(E)-beta-ocimene synthase activity GO:0034768
Catalysis of the reaction: geranyl diphosphate = (E)-beta-ocimene + diphosphate.
|
3 | A4FVP2 (/IDA) Q9LRZ6 (/IDA) Q9ZUH4 (/IDA) |
Myrcene synthase activity GO:0050551
Catalysis of the reaction: geranyl diphosphate = diphosphate + myrcene.
|
3 | A4FVP2 (/IDA) Q9LRZ6 (/IDA) Q9ZUH4 (/IDA) |
Cyclase activity GO:0009975
Catalysis of a ring closure reaction.
|
2 | Q9T0J9 (/IDA) Q9T0K1 (/IDA) |
Terpene synthase activity GO:0010333
Catalysis of the formation of cyclic terpenes through the cyclization of linear terpenes (e.g. isopentenyl-PP, geranyl-PP, farnesyl-PP and geranylgeranyl-PP) containing varying numbers of isoprene units.
|
2 | A4FVP2 (/ISS) Q9ZUH4 (/ISS) |
Hydrolase activity GO:0016787
Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
|
2 | Q6USK1 (/IDA) Q8GUE4 (/IDA) |
Protein homodimerization activity GO:0042803
Interacting selectively and non-covalently with an identical protein to form a homodimer.
|
2 | O81192 (/IDA) Q6USK1 (/IDA) |
Magnesium ion binding GO:0000287
Interacting selectively and non-covalently with magnesium (Mg) ions.
|
1 | Q29VN2 (/ISS) |
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
|
1 | Q9LRZ6 (/IPI) |
Carbon-oxygen lyase activity, acting on phosphates GO:0016838
Catalysis of the cleavage of a carbon-oxygen bond by elimination of a phosphate.
|
1 | G5CV45 (/IDA) |
(R)-limonene synthase activity GO:0034002
Catalysis of the reaction: geranyl diphosphate = (4R)-limonene + diphosphate.
|
1 | Q9LRZ6 (/IDA) |
S-linalool synthase activity GO:0034007
Catalysis of the reaction: geranyl diphosphate + H(2)O = (S)-linalool + diphosphate.
|
1 | Q29VN2 (/IDA) |
Isoprene synthase activity GO:0034009
Catalysis of the reaction: dimethylallyl diphosphate = diphosphate + isoprene.
|
1 | Q50L36 (/IDA) |
Protein homodimerization activity GO:0042803
Interacting selectively and non-covalently with an identical protein to form a homodimer.
|
1 | Q8GUE4 (/ISS) |
Metal ion binding GO:0046872
Interacting selectively and non-covalently with any metal ion.
|
1 | Q9LKN1 (/TAS) |
Geranyl-diphosphate cyclase activity GO:0047926
Catalysis of the reaction: geranyl diphosphate = (2S)-bornyl diphosphate.
|
1 | O81192 (/IDA) |
Pinene synthase activity GO:0050550
Catalysis of the reaction: geranyl diphosphate = pinene + diphosphate.
|
1 | Q9LRZ6 (/IDA) |
(4S)-limonene synthase activity GO:0050552
Catalysis of the reaction: geranyl diphosphate = (4S)-limonene + diphosphate.
|
1 | Q9LRZ6 (/IDA) |
Alpha-farnesene synthase activity GO:0052578
Catalysis of the reaction: 2-trans,6-trans-farnesyl diphosphate = (E,E)-alpha-farnesene + diphosphate.
|
1 | A4FVP2 (/IMP) |
(E,E)-geranyllinalool synthase activity GO:0080013
Catalysis of the reaction: all-trans-geranyl-geranyl diphosphate + H2O = (E,E)-geranyllinalool + diphosphate.
|
1 | Q29VN2 (/IDA) |
Sabinene synthase activity GO:0080015
Catalysis of the reaction: geranyl diphosphate = sabinene + diphosphate.
|
1 | Q9LRZ6 (/IDA) |
(-)-E-beta-caryophyllene synthase activity GO:0080016
Catalysis of the reaction: 2-trans,6-trans-farnesyl diphosphate = (-)-E-beta-caryophyllene + diphosphate.
|
1 | Q84UU4 (/IDA) |
Alpha-humulene synthase activity GO:0080017
Catalysis of the reaction: 2-trans,6-trans-farnesyl diphosphate = alpha-humulene + diphosphate.
|
1 | Q84UU4 (/IDA) |
Camphene synthase activity GO:0102703
Catalysis of the reaction: geranyl diphosphate <=> (-)-camphene + diphosphoric acid
|
1 | O81192 (/IDA) |
There are 45 GO terms relating to "biological process"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Sesquiterpene biosynthetic process GO:0051762
The chemical reactions and pathways resulting in the formation of sesquiterpenes, any of a class of terpenes of the formula C15H24 or a derivative of such a terpene.
|
18 |
A0A1D6EFT8 (/IDA)
B2C4D0 (/IDA)
B2KSJ5 (/IDA)
B2KSJ5 (/IDA)
B3TPQ6 (/IDA)
B9RXW0 (/IDA)
B9T536 (/IDA)
D0VMR6 (/IDA)
D0VMR7 (/IDA)
D0VMR8 (/IDA)
(8 more) |
Farnesyl diphosphate metabolic process GO:0045338
The chemical reactions and pathways involving farnesyl diphosphate, an intermediate in carotenoid, sesquiterpene, squalene and sterol biosynthesis, as well as a substrate in protein farnesylation.
|
15 |
B2KSJ5 (/IDA)
B2KSJ5 (/IDA)
B3TPQ6 (/IDA)
D0VMR6 (/IDA)
D0VMR7 (/IDA)
D0VMR8 (/IDA)
Q49SP4 (/IDA)
Q49SP5 (/IDA)
Q49SP6 (/IDA)
Q49SP7 (/IDA)
(5 more) |
Terpenoid biosynthetic process GO:0016114
The chemical reactions and pathways resulting in the formation of terpenoids, any member of a class of compounds characterized by an isoprenoid chemical structure.
|
11 |
A0A178U9Y5 (/IDA)
A0A291LSD6 (/IDA)
B2C4D0 (/IDA)
Q1EG72 (/IDA)
Q5GJ59 (/IDA)
Q5GJ60 (/IDA)
Q84UU9 (/IDA)
Q8L7G4 (/IDA)
Q9LH31 (/IDA)
Q9LIA1 (/IDA)
(1 more) |
Geranyl diphosphate metabolic process GO:0033383
The chemical reactions and pathways involving geranyl diphosphate, the universal precursor of the monoterpenes.
|
10 | B3TPQ7 (/IDA) B5A434 (/IDA) B5A435 (/IDA) E2E2P0 (/IDA) Q6USK1 (/IDA) Q8GUE4 (/IDA) Q8H2B4 (/IDA) Q8L5K4 (/IDA) Q9SPN0 (/IDA) Q9SPN1 (/IDA) |
Response to wounding GO:0009611
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to the organism.
|
9 | A4FVP2 (/IEP) Q29VN2 (/IEP) Q5UB07 (/IEP) Q672F7 (/IEP) Q9SPN0 (/IEP) Q9SPN1 (/IEP) Q9T0J9 (/IEP) Q9T0K1 (/IEP) Q9ZUH4 (/IEP) |
Farnesyl diphosphate catabolic process GO:0045339
The chemical reactions and pathways resulting in the breakdown of farnesyl diphosphate.
|
7 | B2C4D0 (/IDA) G5CV45 (/IDA) J7LH11 (/IDA) J7LJN5 (/IDA) J7LMP2 (/IDA) J7LP58 (/IDA) J7LQ09 (/IDA) |
Response to herbivore GO:0080027
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a herbivore.
|
7 | A0A291LSD6 (/IEP) A4FVP2 (/IEP) B2C4D0 (/IEP) Q5UB07 (/IEP) Q672F7 (/IEP) Q84UU4 (/IEP) Q9ZUH4 (/IEP) |
Response to parasitic fungus GO:0009623
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a parasitic fungus, a fungus which spends all or part of its life in or on another organism from which it obtains nourishment and/or protection.
|
4 | A0A1D6EFT8 (/IEP) A0A291LSD6 (/IEP) Q1EG72 (/IEP) Q5GJ60 (/IEP) |
Response to jasmonic acid GO:0009753
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a jasmonic acid stimulus.
|
4 | A4FVP2 (/IEP) Q5GJ59 (/IEP) Q5UB07 (/IEP) Q9ZUH4 (/IEP) |
Sesquiterpenoid biosynthetic process GO:0016106
The chemical reactions and pathways resulting in the formation of sesquiterpenoid compounds, terpenoids with three isoprene units.
|
4 | Q4KSH9 (/IDA) Q84UU4 (/IDA) Q9T0J9 (/IDA) Q9T0K1 (/IDA) |
Response to jasmonic acid GO:0009753
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a jasmonic acid stimulus.
|
3 | D0VMR6 (/IDA) D0VMR7 (/IDA) D0VMR8 (/IDA) |
Monoterpene biosynthetic process GO:0043693
The chemical reactions and pathways resulting in the formation of monoterpenes, terpenes with a C10 structure.
|
3 | B3TPQ7 (/IDA) Q29VN2 (/IDA) Q9LRZ6 (/IDA) |
Response to fungus GO:0009620
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a fungus.
|
2 | Q39760 (/IDA) Q39760 (/IDA) |
Response to fungus GO:0009620
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a fungus.
|
2 | Q5GJ59 (/IEP) Q9LKN1 (/IEP) |
Response to insect GO:0009625
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from an insect.
|
2 | A4FVP2 (/IEP) B2C4D0 (/IEP) |
Sepal development GO:0048442
The process whose specific outcome is the progression of the sepal over time, from its formation to the mature structure.
|
2 | Q43714 (/IEP) Q43714 (/IEP) |
Stigma development GO:0048480
The process whose specific outcome is the progression of the stigma over time, from its formation to the mature structure. The stigma is the pollen-receptive surface of a carpel or group of fused carpels, usually sticky.
|
2 | Q43714 (/IEP) Q43714 (/IEP) |
Anther development GO:0048653
The process whose specific outcome is the progression of the anther over time, from its formation to the mature structure.
|
2 | Q43714 (/IEP) Q43714 (/IEP) |
Cotyledon development GO:0048825
The process whose specific outcome is the progression of the cotyledon over time, from its formation to the mature structure. The cotyledon is the modified leaf (seed leaf), found as part of the embryo in plant seeds. It is involved in either storage or absorption of food reserves. Dicotyledonous seeds contain two cotyledons, while monocotyledonous seeds contain only one. The cotyledons may appear above ground and show photosynthetic activity in the seedling.
|
2 | Q43714 (/IEP) Q43714 (/IEP) |
Seed trichome initiation GO:0090377
The process in which the developmental fate of an epidermal cell becomes restricted such that it will develop into a seed trichome, causing a change in the orientation of cell division in the ovule epidermis at or just before anthesis.
|
2 | Q43714 (/TAS) Q43714 (/TAS) |
Cadinene biosynthetic process GO:1901928
The chemical reactions and pathways resulting in the formation of cadinene.
|
2 | B9S9Z3 (/IDA) J7LP58 (/IDA) |
Beta-caryophyllene biosynthetic process GO:1901937
The chemical reactions and pathways resulting in the formation of beta-caryophyllene.
|
2 | B2C4D0 (/IDA) J7LJN5 (/IDA) |
Defense response to insect GO:0002213
A response to protect an organism from a directly detected or perceived external threat from an insect or insects to that organism.
|
1 | B2C4D0 (/IDA) |
Response to heat GO:0009408
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a heat stimulus, a temperature stimulus above the optimal temperature for that organism.
|
1 | Q50L36 (/IEP) |
Response to cold GO:0009409
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism.
|
1 | Q50L36 (/IEP) |
Response to bacterium GO:0009617
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a bacterium.
|
1 | P93665 (/IDA) |
Response to bacterium GO:0009617
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a bacterium.
|
1 | Q9LKN1 (/IMP) |
Response to fungus GO:0009620
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a fungus.
|
1 | Q9LKN1 (/IMP) |
Response to abscisic acid GO:0009737
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an abscisic acid stimulus.
|
1 | Q5GJ59 (/IEP) |
Monoterpenoid biosynthetic process GO:0016099
The chemical reactions and pathways resulting in the formation of monoterpenoid compounds, terpenoids having a C10 skeleton.
|
1 | Q9ZUH4 (/IDA) |
Diterpenoid biosynthetic process GO:0016102
The chemical reactions and pathways resulting in the formation of diterpenoid compounds, terpenoids with four isoprene units.
|
1 | Q29VN2 (/IDA) |
Sesquiterpenoid biosynthetic process GO:0016106
The chemical reactions and pathways resulting in the formation of sesquiterpenoid compounds, terpenoids with three isoprene units.
|
1 | A4FVP2 (/IMP) |
Regulation of defense response GO:0031347
Any process that modulates the frequency, rate or extent of a defense response.
|
1 | Q29VN2 (/IEP) |
Isoprene biosynthetic process GO:0043612
The chemical reactions and pathways resulting in the formation of isoprene, C5H8.
|
1 | Q50L36 (/IDA) |
(+)-camphor biosynthetic process GO:0046211
The chemical reactions and pathways resulting in the formation of (+)-camphor, a bicyclic monoterpene ketone.
|
1 | O81192 (/IDA) |
Terpene biosynthetic process GO:0046246
The chemical reactions and pathways resulting in the formation of terpenes, any of a large group of hydrocarbons made up of isoprene units.
|
1 | A0A1D6EFT8 (/IDA) |
Terpene biosynthetic process GO:0046246
The chemical reactions and pathways resulting in the formation of terpenes, any of a large group of hydrocarbons made up of isoprene units.
|
1 | O23651 (/ISS) |
Dimethylallyl diphosphate metabolic process GO:0050993
The chemical reactions and pathways involving dimethylallyl diphosphate.
|
1 | Q50L36 (/IDA) |
Cellular response to light stimulus GO:0071482
Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a light stimulus, electromagnetic radiation of wavelengths classified as infrared, visible or ultraviolet light.
|
1 | Q50L36 (/IEP) |
Cellular response to absence of light GO:0071485
Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an absence of light stimuli.
|
1 | Q50L36 (/IEP) |
Olefin biosynthetic process GO:1900674
The chemical reactions and pathways resulting in the formation of olefin.
|
1 | B9SBU9 (/IDA) |
Alpha-copaene biosynthetic process GO:1901931
The chemical reactions and pathways resulting in the formation of alpha-copaene.
|
1 | J7LP58 (/IDA) |
Bicyclogermacrene biosynthetic process GO:1901934
The chemical reactions and pathways resulting in the formation of bicyclogermacrene.
|
1 | J7LMP2 (/IDA) |
(-)-exo-alpha-bergamotene biosynthetic process GO:1901940
The chemical reactions and pathways resulting in the formation of (-)-exo-alpha-bergamotene.
|
1 | J7LQ09 (/IDA) |
(+)-epi-alpha-bisabolol biosynthetic process GO:1901943
The chemical reactions and pathways resulting in the formation of (+)-epi-alpha-bisabolol.
|
1 | J7LH11 (/IDA) |
There are 7 GO terms relating to "cellular component"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Chloroplast GO:0009507
A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma.
|
3 | A0A178U9Y5 (/IDA) Q29VN2 (/IDA) Q50L36 (/IDA) |
Chloroplast stroma GO:0009570
The space enclosed by the double membrane of a chloroplast but excluding the thylakoid space. It contains DNA, ribosomes and some temporary products of photosynthesis.
|
3 | A4FVP2 (/ISS) Q672F7 (/ISS) Q9ZUH4 (/ISS) |
Chloroplast stroma GO:0009570
The space enclosed by the double membrane of a chloroplast but excluding the thylakoid space. It contains DNA, ribosomes and some temporary products of photosynthesis.
|
2 | B3TPQ7 (/IDA) Q5UB07 (/IDA) |
Peroxisome GO:0005777
A small organelle enclosed by a single membrane, and found in most eukaryotic cells. Contains peroxidases and other enzymes involved in a variety of metabolic processes including free radical detoxification, lipid catabolism and biosynthesis, and hydrogen peroxide metabolism.
|
1 | Q9T0J9 (/IDA) |
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
|
1 | A4FVP2 (/IDA) |
Plasmodesma GO:0009506
A fine cytoplasmic channel, found in all higher plants, that connects the cytoplasm of one cell to that of an adjacent cell.
|
1 | Q4KSH9 (/IDA) |
Membrane GO:0016020
A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
|
1 | Q9C6W6 (/IDA) |