The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was named:
"Histone, subunit A
".
FunFam 28: Transcription initiation factor TFIID subunit 13
Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.
There are 5 GO terms relating to "molecular function"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
|
86 |
P61216 (/IPI)
P61216 (/IPI)
P61216 (/IPI)
P61216 (/IPI)
P61216 (/IPI)
P61216 (/IPI)
P61216 (/IPI)
P61216 (/IPI)
P61216 (/IPI)
P61216 (/IPI)
(76 more) |
DNA binding GO:0003677
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
|
43 |
P61216 (/IDA)
P61216 (/IDA)
P61216 (/IDA)
P61216 (/IDA)
P61216 (/IDA)
P61216 (/IDA)
P61216 (/IDA)
P61216 (/IDA)
P61216 (/IDA)
P61216 (/IDA)
(33 more) |
DNA-binding transcription factor activity GO:0003700
A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons.
|
43 |
Q15543 (/NAS)
Q15543 (/NAS)
Q15543 (/NAS)
Q15543 (/NAS)
Q15543 (/NAS)
Q15543 (/NAS)
Q15543 (/NAS)
Q15543 (/NAS)
Q15543 (/NAS)
Q15543 (/NAS)
(33 more) |
Protein C-terminus binding GO:0008022
Interacting selectively and non-covalently with a protein C-terminus, the end of any peptide chain at which the 1-carboxyl function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue.
|
43 |
Q15543 (/IPI)
Q15543 (/IPI)
Q15543 (/IPI)
Q15543 (/IPI)
Q15543 (/IPI)
Q15543 (/IPI)
Q15543 (/IPI)
Q15543 (/IPI)
Q15543 (/IPI)
Q15543 (/IPI)
(33 more) |
Protein C-terminus binding GO:0008022
Interacting selectively and non-covalently with a protein C-terminus, the end of any peptide chain at which the 1-carboxyl function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue.
|
43 |
P61216 (/ISO)
P61216 (/ISO)
P61216 (/ISO)
P61216 (/ISO)
P61216 (/ISO)
P61216 (/ISO)
P61216 (/ISO)
P61216 (/ISO)
P61216 (/ISO)
P61216 (/ISO)
(33 more) |
There are 8 GO terms relating to "biological process"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
DNA-templated transcription, initiation GO:0006352
Any process involved in the assembly of the RNA polymerase preinitiation complex (PIC) at the core promoter region of a DNA template, resulting in the subsequent synthesis of RNA from that promoter. The initiation phase includes PIC assembly and the formation of the first few bonds in the RNA chain, including abortive initiation, which occurs when the first few nucleotides are repeatedly synthesized and then released. The initiation phase ends just before and does not include promoter clearance, or release, which is the transition between the initiation and elongation phases of transcription.
|
43 |
Q15543 (/NAS)
Q15543 (/NAS)
Q15543 (/NAS)
Q15543 (/NAS)
Q15543 (/NAS)
Q15543 (/NAS)
Q15543 (/NAS)
Q15543 (/NAS)
Q15543 (/NAS)
Q15543 (/NAS)
(33 more) |
Transcription by RNA polymerase II GO:0006366
The synthesis of RNA from a DNA template by RNA polymerase II (RNAP II), originating at an RNA polymerase II promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs).
|
43 |
Q15543 (/IC)
Q15543 (/IC)
Q15543 (/IC)
Q15543 (/IC)
Q15543 (/IC)
Q15543 (/IC)
Q15543 (/IC)
Q15543 (/IC)
Q15543 (/IC)
Q15543 (/IC)
(33 more) |
Transcription by RNA polymerase II GO:0006366
The synthesis of RNA from a DNA template by RNA polymerase II (RNAP II), originating at an RNA polymerase II promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs).
|
43 |
Q15543 (/TAS)
Q15543 (/TAS)
Q15543 (/TAS)
Q15543 (/TAS)
Q15543 (/TAS)
Q15543 (/TAS)
Q15543 (/TAS)
Q15543 (/TAS)
Q15543 (/TAS)
Q15543 (/TAS)
(33 more) |
Transcription initiation from RNA polymerase II promoter GO:0006367
Any process involved in the assembly of the RNA polymerase II preinitiation complex (PIC) at an RNA polymerase II promoter region of a DNA template, resulting in the subsequent synthesis of RNA from that promoter. The initiation phase includes PIC assembly and the formation of the first few bonds in the RNA chain, including abortive initiation, which occurs when the first few nucleotides are repeatedly synthesized and then released. Promoter clearance, or release, is the transition between the initiation and elongation phases of transcription.
|
43 |
Q15543 (/IC)
Q15543 (/IC)
Q15543 (/IC)
Q15543 (/IC)
Q15543 (/IC)
Q15543 (/IC)
Q15543 (/IC)
Q15543 (/IC)
Q15543 (/IC)
Q15543 (/IC)
(33 more) |
Transcription initiation from RNA polymerase II promoter GO:0006367
Any process involved in the assembly of the RNA polymerase II preinitiation complex (PIC) at an RNA polymerase II promoter region of a DNA template, resulting in the subsequent synthesis of RNA from that promoter. The initiation phase includes PIC assembly and the formation of the first few bonds in the RNA chain, including abortive initiation, which occurs when the first few nucleotides are repeatedly synthesized and then released. Promoter clearance, or release, is the transition between the initiation and elongation phases of transcription.
|
43 |
Q15543 (/TAS)
Q15543 (/TAS)
Q15543 (/TAS)
Q15543 (/TAS)
Q15543 (/TAS)
Q15543 (/TAS)
Q15543 (/TAS)
Q15543 (/TAS)
Q15543 (/TAS)
Q15543 (/TAS)
(33 more) |
SnRNA transcription by RNA polymerase II GO:0042795
The synthesis of small nuclear RNA (snRNA) from a DNA template by RNA Polymerase II (Pol II), originating at a Pol II promoter.
|
43 |
Q15543 (/TAS)
Q15543 (/TAS)
Q15543 (/TAS)
Q15543 (/TAS)
Q15543 (/TAS)
Q15543 (/TAS)
Q15543 (/TAS)
Q15543 (/TAS)
Q15543 (/TAS)
Q15543 (/TAS)
(33 more) |
Regulation of signal transduction by p53 class mediator GO:1901796
Any process that modulates the frequency, rate or extent of signal transduction by p53 class mediator.
|
43 |
Q15543 (/TAS)
Q15543 (/TAS)
Q15543 (/TAS)
Q15543 (/TAS)
Q15543 (/TAS)
Q15543 (/TAS)
Q15543 (/TAS)
Q15543 (/TAS)
Q15543 (/TAS)
Q15543 (/TAS)
(33 more) |
Transcription initiation from RNA polymerase II promoter GO:0006367
Any process involved in the assembly of the RNA polymerase II preinitiation complex (PIC) at an RNA polymerase II promoter region of a DNA template, resulting in the subsequent synthesis of RNA from that promoter. The initiation phase includes PIC assembly and the formation of the first few bonds in the RNA chain, including abortive initiation, which occurs when the first few nucleotides are repeatedly synthesized and then released. Promoter clearance, or release, is the transition between the initiation and elongation phases of transcription.
|
2 | Q9VIP1 (/ISS) Q9VIP1 (/ISS) |
There are 9 GO terms relating to "cellular component"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
129 |
A0A024R089 (/IDA)
A0A024R089 (/IDA)
A0A024R089 (/IDA)
A0A024R089 (/IDA)
A0A024R089 (/IDA)
A0A024R089 (/IDA)
A0A024R089 (/IDA)
A0A024R089 (/IDA)
A0A024R089 (/IDA)
A0A024R089 (/IDA)
(119 more) |
Nucleolus GO:0005730
A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.
|
86 |
A0A024R089 (/IDA)
A0A024R089 (/IDA)
A0A024R089 (/IDA)
A0A024R089 (/IDA)
A0A024R089 (/IDA)
A0A024R089 (/IDA)
A0A024R089 (/IDA)
A0A024R089 (/IDA)
A0A024R089 (/IDA)
A0A024R089 (/IDA)
(76 more) |
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
43 |
P61216 (/ISO)
P61216 (/ISO)
P61216 (/ISO)
P61216 (/ISO)
P61216 (/ISO)
P61216 (/ISO)
P61216 (/ISO)
P61216 (/ISO)
P61216 (/ISO)
P61216 (/ISO)
(33 more) |
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
|
43 |
Q15543 (/TAS)
Q15543 (/TAS)
Q15543 (/TAS)
Q15543 (/TAS)
Q15543 (/TAS)
Q15543 (/TAS)
Q15543 (/TAS)
Q15543 (/TAS)
Q15543 (/TAS)
Q15543 (/TAS)
(33 more) |
Transcription factor TFIID complex GO:0005669
A complex composed of TATA binding protein (TBP) and TBP associated factors (TAFs); the total mass is typically about 800 kDa. Most of the TAFs are conserved across species. In TATA-containing promoters for RNA polymerase II (Pol II), TFIID is believed to recognize at least two distinct elements, the TATA element and a downstream promoter element. TFIID is also involved in recognition of TATA-less Pol II promoters. Binding of TFIID to DNA is necessary but not sufficient for transcription initiation from most RNA polymerase II promoters.
|
43 |
Q15543 (/IDA)
Q15543 (/IDA)
Q15543 (/IDA)
Q15543 (/IDA)
Q15543 (/IDA)
Q15543 (/IDA)
Q15543 (/IDA)
Q15543 (/IDA)
Q15543 (/IDA)
Q15543 (/IDA)
(33 more) |
Transcription factor TFIID complex GO:0005669
A complex composed of TATA binding protein (TBP) and TBP associated factors (TAFs); the total mass is typically about 800 kDa. Most of the TAFs are conserved across species. In TATA-containing promoters for RNA polymerase II (Pol II), TFIID is believed to recognize at least two distinct elements, the TATA element and a downstream promoter element. TFIID is also involved in recognition of TATA-less Pol II promoters. Binding of TFIID to DNA is necessary but not sufficient for transcription initiation from most RNA polymerase II promoters.
|
43 |
P61216 (/ISO)
P61216 (/ISO)
P61216 (/ISO)
P61216 (/ISO)
P61216 (/ISO)
P61216 (/ISO)
P61216 (/ISO)
P61216 (/ISO)
P61216 (/ISO)
P61216 (/ISO)
(33 more) |
Transcription factor TFIID complex GO:0005669
A complex composed of TATA binding protein (TBP) and TBP associated factors (TAFs); the total mass is typically about 800 kDa. Most of the TAFs are conserved across species. In TATA-containing promoters for RNA polymerase II (Pol II), TFIID is believed to recognize at least two distinct elements, the TATA element and a downstream promoter element. TFIID is also involved in recognition of TATA-less Pol II promoters. Binding of TFIID to DNA is necessary but not sufficient for transcription initiation from most RNA polymerase II promoters.
|
43 |
Q15543 (/NAS)
Q15543 (/NAS)
Q15543 (/NAS)
Q15543 (/NAS)
Q15543 (/NAS)
Q15543 (/NAS)
Q15543 (/NAS)
Q15543 (/NAS)
Q15543 (/NAS)
Q15543 (/NAS)
(33 more) |
Nucleolus GO:0005730
A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.
|
43 |
P61216 (/ISO)
P61216 (/ISO)
P61216 (/ISO)
P61216 (/ISO)
P61216 (/ISO)
P61216 (/ISO)
P61216 (/ISO)
P61216 (/ISO)
P61216 (/ISO)
P61216 (/ISO)
(33 more) |
Transcription factor TFIID complex GO:0005669
A complex composed of TATA binding protein (TBP) and TBP associated factors (TAFs); the total mass is typically about 800 kDa. Most of the TAFs are conserved across species. In TATA-containing promoters for RNA polymerase II (Pol II), TFIID is believed to recognize at least two distinct elements, the TATA element and a downstream promoter element. TFIID is also involved in recognition of TATA-less Pol II promoters. Binding of TFIID to DNA is necessary but not sufficient for transcription initiation from most RNA polymerase II promoters.
|
2 | Q9VIP1 (/ISS) Q9VIP1 (/ISS) |