The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was named:
"Histone, subunit A
".
FunFam 21: Histone H2A
Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.
There are 5 GO terms relating to "molecular function"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
RNA polymerase II proximal promoter sequence-specific DNA binding GO:0000978
Interacting selectively and non-covalently with a specific upstream regulatory DNA sequence (transcription factor recognition sequence or binding site) located in the proximal promoter of a gene transcribed by RNA polymerase II. The proximal promoter is in cis with and relatively close to the core promoter.
|
9 | Q12692 (/IDA) Q12692 (/IDA) Q12692 (/IDA) Q12692 (/IDA) Q12692 (/IDA) Q12692 (/IDA) Q12692 (/IDA) Q12692 (/IDA) Q12692 (/IDA) |
Chromatin binding GO:0003682
Interacting selectively and non-covalently with chromatin, the network of fibers of DNA, protein, and sometimes RNA, that make up the chromosomes of the eukaryotic nucleus during interphase.
|
9 | Q12692 (/IDA) Q12692 (/IDA) Q12692 (/IDA) Q12692 (/IDA) Q12692 (/IDA) Q12692 (/IDA) Q12692 (/IDA) Q12692 (/IDA) Q12692 (/IDA) |
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
|
9 | Q12692 (/IPI) Q12692 (/IPI) Q12692 (/IPI) Q12692 (/IPI) Q12692 (/IPI) Q12692 (/IPI) Q12692 (/IPI) Q12692 (/IPI) Q12692 (/IPI) |
Chromatin DNA binding GO:0031490
Interacting selectively and non-covalently with DNA that is assembled into chromatin.
|
9 | Q12692 (/IDA) Q12692 (/IDA) Q12692 (/IDA) Q12692 (/IDA) Q12692 (/IDA) Q12692 (/IDA) Q12692 (/IDA) Q12692 (/IDA) Q12692 (/IDA) |
Identical protein binding GO:0042802
Interacting selectively and non-covalently with an identical protein or proteins.
|
9 | Q12692 (/IPI) Q12692 (/IPI) Q12692 (/IPI) Q12692 (/IPI) Q12692 (/IPI) Q12692 (/IPI) Q12692 (/IPI) Q12692 (/IPI) Q12692 (/IPI) |
There are 5 GO terms relating to "biological process"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Chromatin remodeling GO:0006338
Dynamic structural changes to eukaryotic chromatin occurring throughout the cell division cycle. These changes range from the local changes necessary for transcriptional regulation to global changes necessary for chromosome segregation.
|
9 | Q12692 (/IMP) Q12692 (/IMP) Q12692 (/IMP) Q12692 (/IMP) Q12692 (/IMP) Q12692 (/IMP) Q12692 (/IMP) Q12692 (/IMP) Q12692 (/IMP) |
Regulation of transcription by RNA polymerase II GO:0006357
Any process that modulates the frequency, rate or extent of transcription mediated by RNA polymerase II.
|
9 | Q12692 (/IGI) Q12692 (/IGI) Q12692 (/IGI) Q12692 (/IGI) Q12692 (/IGI) Q12692 (/IGI) Q12692 (/IGI) Q12692 (/IGI) Q12692 (/IGI) |
Regulation of transcription by RNA polymerase II GO:0006357
Any process that modulates the frequency, rate or extent of transcription mediated by RNA polymerase II.
|
9 | Q12692 (/IMP) Q12692 (/IMP) Q12692 (/IMP) Q12692 (/IMP) Q12692 (/IMP) Q12692 (/IMP) Q12692 (/IMP) Q12692 (/IMP) Q12692 (/IMP) |
Chromatin silencing at silent mating-type cassette GO:0030466
Repression of transcription at silent mating-type loci by alteration of the structure of chromatin.
|
9 | Q12692 (/IGI) Q12692 (/IGI) Q12692 (/IGI) Q12692 (/IGI) Q12692 (/IGI) Q12692 (/IGI) Q12692 (/IGI) Q12692 (/IGI) Q12692 (/IGI) |
Nuclear-transcribed mRNA catabolic process, non-stop decay GO:0070481
The chemical reactions and pathways resulting in the breakdown of the transcript body of a nuclear-transcribed mRNA that is lacking a stop codon.
|
9 | Q12692 (/IMP) Q12692 (/IMP) Q12692 (/IMP) Q12692 (/IMP) Q12692 (/IMP) Q12692 (/IMP) Q12692 (/IMP) Q12692 (/IMP) Q12692 (/IMP) |
There are 3 GO terms relating to "cellular component"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Nuclear chromatin GO:0000790
The ordered and organized complex of DNA, protein, and sometimes RNA, that forms the chromosome in the nucleus.
|
9 | Q12692 (/IDA) Q12692 (/IDA) Q12692 (/IDA) Q12692 (/IDA) Q12692 (/IDA) Q12692 (/IDA) Q12692 (/IDA) Q12692 (/IDA) Q12692 (/IDA) |
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
9 | Q12692 (/HDA) Q12692 (/HDA) Q12692 (/HDA) Q12692 (/HDA) Q12692 (/HDA) Q12692 (/HDA) Q12692 (/HDA) Q12692 (/HDA) Q12692 (/HDA) |
Nuclear euchromatin GO:0005719
The dispersed less dense form of chromatin in the interphase nucleus. It exists in at least two forms, a some being in the form of transcriptionally active chromatin which is the least condensed, while the rest is inactive euchromatin which is more condensed than active chromatin but less condensed than heterochromatin.
|
9 | Q12692 (/IDA) Q12692 (/IDA) Q12692 (/IDA) Q12692 (/IDA) Q12692 (/IDA) Q12692 (/IDA) Q12692 (/IDA) Q12692 (/IDA) Q12692 (/IDA) |