The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was named:
"Histone, subunit A
".
FunFam 20: Histone H2A
Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.
There are 4 GO terms relating to "molecular function"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
DNA binding GO:0003677
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
|
17 |
P16104 (/NAS)
P16104 (/NAS)
P16104 (/NAS)
P16104 (/NAS)
P16104 (/NAS)
P16104 (/NAS)
P16104 (/NAS)
P16104 (/NAS)
P16104 (/NAS)
P16104 (/NAS)
(7 more) |
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
|
17 |
P16104 (/IPI)
P16104 (/IPI)
P16104 (/IPI)
P16104 (/IPI)
P16104 (/IPI)
P16104 (/IPI)
P16104 (/IPI)
P16104 (/IPI)
P16104 (/IPI)
P16104 (/IPI)
(7 more) |
Enzyme binding GO:0019899
Interacting selectively and non-covalently with any enzyme.
|
17 |
P16104 (/IPI)
P16104 (/IPI)
P16104 (/IPI)
P16104 (/IPI)
P16104 (/IPI)
P16104 (/IPI)
P16104 (/IPI)
P16104 (/IPI)
P16104 (/IPI)
P16104 (/IPI)
(7 more) |
Histone binding GO:0042393
Interacting selectively and non-covalently with a histone, any of a group of water-soluble proteins found in association with the DNA of eukaroytic chromosomes. They are involved in the condensation and coiling of chromosomes during cell division and have also been implicated in nonspecific suppression of gene activity.
|
17 |
P16104 (/IPI)
P16104 (/IPI)
P16104 (/IPI)
P16104 (/IPI)
P16104 (/IPI)
P16104 (/IPI)
P16104 (/IPI)
P16104 (/IPI)
P16104 (/IPI)
P16104 (/IPI)
(7 more) |
There are 15 GO terms relating to "biological process"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
DNA damage checkpoint GO:0000077
A cell cycle checkpoint that regulates progression through the cell cycle in response to DNA damage. A DNA damage checkpoint may blocks cell cycle progression (in G1, G2 or metaphase) or slow the rate at which S phase proceeds.
|
17 |
P16104 (/IDA)
P16104 (/IDA)
P16104 (/IDA)
P16104 (/IDA)
P16104 (/IDA)
P16104 (/IDA)
P16104 (/IDA)
P16104 (/IDA)
P16104 (/IDA)
P16104 (/IDA)
(7 more) |
Double-strand break repair GO:0006302
The repair of double-strand breaks in DNA via homologous and nonhomologous mechanisms to reform a continuous DNA helix.
|
17 |
P16104 (/NAS)
P16104 (/NAS)
P16104 (/NAS)
P16104 (/NAS)
P16104 (/NAS)
P16104 (/NAS)
P16104 (/NAS)
P16104 (/NAS)
P16104 (/NAS)
P16104 (/NAS)
(7 more) |
Double-strand break repair via nonhomologous end joining GO:0006303
The repair of a double-strand break in DNA in which the two broken ends are rejoined with little or no sequence complementarity. Information at the DNA ends may be lost due to the modification of broken DNA ends. This term covers instances of separate pathways, called classical (or canonical) and alternative nonhomologous end joining (C-NHEJ and A-NHEJ). These in turn may further branch into sub-pathways, but evidence is still unclear.
|
17 |
P16104 (/TAS)
P16104 (/TAS)
P16104 (/TAS)
P16104 (/TAS)
P16104 (/TAS)
P16104 (/TAS)
P16104 (/TAS)
P16104 (/TAS)
P16104 (/TAS)
P16104 (/TAS)
(7 more) |
Nucleosome assembly GO:0006334
The aggregation, arrangement and bonding together of a nucleosome, the beadlike structural units of eukaryotic chromatin composed of histones and DNA.
|
17 |
P16104 (/NAS)
P16104 (/NAS)
P16104 (/NAS)
P16104 (/NAS)
P16104 (/NAS)
P16104 (/NAS)
P16104 (/NAS)
P16104 (/NAS)
P16104 (/NAS)
P16104 (/NAS)
(7 more) |
Cellular response to DNA damage stimulus GO:0006974
Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to its DNA from environmental insults or errors during metabolism.
|
17 |
P16104 (/IDA)
P16104 (/IDA)
P16104 (/IDA)
P16104 (/IDA)
P16104 (/IDA)
P16104 (/IDA)
P16104 (/IDA)
P16104 (/IDA)
P16104 (/IDA)
P16104 (/IDA)
(7 more) |
Cellular response to DNA damage stimulus GO:0006974
Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to its DNA from environmental insults or errors during metabolism.
|
17 |
P16104 (/IMP)
P16104 (/IMP)
P16104 (/IMP)
P16104 (/IMP)
P16104 (/IMP)
P16104 (/IMP)
P16104 (/IMP)
P16104 (/IMP)
P16104 (/IMP)
P16104 (/IMP)
(7 more) |
Response to ionizing radiation GO:0010212
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a ionizing radiation stimulus. Ionizing radiation is radiation with sufficient energy to remove electrons from atoms and may arise from spontaneous decay of unstable isotopes, resulting in alpha and beta particles and gamma rays. Ionizing radiation also includes X-rays.
|
17 |
P16104 (/NAS)
P16104 (/NAS)
P16104 (/NAS)
P16104 (/NAS)
P16104 (/NAS)
P16104 (/NAS)
P16104 (/NAS)
P16104 (/NAS)
P16104 (/NAS)
P16104 (/NAS)
(7 more) |
Positive regulation of DNA repair GO:0045739
Any process that activates or increases the frequency, rate or extent of DNA repair.
|
17 |
P16104 (/NAS)
P16104 (/NAS)
P16104 (/NAS)
P16104 (/NAS)
P16104 (/NAS)
P16104 (/NAS)
P16104 (/NAS)
P16104 (/NAS)
P16104 (/NAS)
P16104 (/NAS)
(7 more) |
DNA repair GO:0006281
The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
|
7 | P09588 (/NAS) P09588 (/NAS) P09588 (/NAS) P09588 (/NAS) P09588 (/NAS) P09588 (/NAS) P09588 (/NAS) |
Regulation of transcription, DNA-templated GO:0006355
Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
|
7 | P09588 (/NAS) P09588 (/NAS) P09588 (/NAS) P09588 (/NAS) P09588 (/NAS) P09588 (/NAS) P09588 (/NAS) |
Spermatogenesis GO:0007283
The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis.
|
1 | D3ZXP3 (/IEP) |
Cerebral cortex development GO:0021987
The progression of the cerebral cortex over time from its initial formation until its mature state. The cerebral cortex is the outer layered region of the telencephalon.
|
1 | D3ZXP3 (/IEP) |
Defense response to bacterium GO:0042742
Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism.
|
1 | Q6PV61 (/IDA) |
Cellular response to gamma radiation GO:0071480
Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a gamma radiation stimulus. Gamma radiation is a form of electromagnetic radiation (EMR) or light emission of a specific frequency produced from sub-atomic particle interaction, such as electron-positron annihilation and radioactive decay. Gamma rays are generally characterized as EMR having the highest frequency and energy, and also the shortest wavelength, within the electromagnetic radiation spectrum.
|
1 | D3ZXP3 (/IDA) |
Cellular senescence GO:0090398
A cell aging process stimulated in response to cellular stress, whereby normal cells lose the ability to divide through irreversible cell cycle arrest.
|
1 | D3ZXP3 (/IEP) |
There are 10 GO terms relating to "cellular component"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
18 |
D3ZXP3 (/IDA)
P16104 (/IDA)
P16104 (/IDA)
P16104 (/IDA)
P16104 (/IDA)
P16104 (/IDA)
P16104 (/IDA)
P16104 (/IDA)
P16104 (/IDA)
P16104 (/IDA)
(8 more) |
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
17 |
P16104 (/HDA)
P16104 (/HDA)
P16104 (/HDA)
P16104 (/HDA)
P16104 (/HDA)
P16104 (/HDA)
P16104 (/HDA)
P16104 (/HDA)
P16104 (/HDA)
P16104 (/HDA)
(7 more) |
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
17 |
P16104 (/IMP)
P16104 (/IMP)
P16104 (/IMP)
P16104 (/IMP)
P16104 (/IMP)
P16104 (/IMP)
P16104 (/IMP)
P16104 (/IMP)
P16104 (/IMP)
P16104 (/IMP)
(7 more) |
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
|
17 |
P16104 (/IDA)
P16104 (/IDA)
P16104 (/IDA)
P16104 (/IDA)
P16104 (/IDA)
P16104 (/IDA)
P16104 (/IDA)
P16104 (/IDA)
P16104 (/IDA)
P16104 (/IDA)
(7 more) |
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
|
17 |
P16104 (/TAS)
P16104 (/TAS)
P16104 (/TAS)
P16104 (/TAS)
P16104 (/TAS)
P16104 (/TAS)
P16104 (/TAS)
P16104 (/TAS)
P16104 (/TAS)
P16104 (/TAS)
(7 more) |
Centrosome GO:0005813
A structure comprised of a core structure (in most organisms, a pair of centrioles) and peripheral material from which a microtubule-based structure, such as a spindle apparatus, is organized. Centrosomes occur close to the nucleus during interphase in many eukaryotic cells, though in animal cells it changes continually during the cell-division cycle.
|
17 |
P16104 (/IDA)
P16104 (/IDA)
P16104 (/IDA)
P16104 (/IDA)
P16104 (/IDA)
P16104 (/IDA)
P16104 (/IDA)
P16104 (/IDA)
P16104 (/IDA)
P16104 (/IDA)
(7 more) |
Nuclear speck GO:0016607
A discrete extra-nucleolar subnuclear domain, 20-50 in number, in which splicing factors are seen to be localized by immunofluorescence microscopy.
|
17 |
P16104 (/IDA)
P16104 (/IDA)
P16104 (/IDA)
P16104 (/IDA)
P16104 (/IDA)
P16104 (/IDA)
P16104 (/IDA)
P16104 (/IDA)
P16104 (/IDA)
P16104 (/IDA)
(7 more) |
Site of double-strand break GO:0035861
A region of a chromosome at which a DNA double-strand break has occurred. DNA damage signaling and repair proteins accumulate at the lesion to respond to the damage and repair the DNA to form a continuous DNA helix.
|
17 |
P16104 (/IDA)
P16104 (/IDA)
P16104 (/IDA)
P16104 (/IDA)
P16104 (/IDA)
P16104 (/IDA)
P16104 (/IDA)
P16104 (/IDA)
P16104 (/IDA)
P16104 (/IDA)
(7 more) |
Extracellular exosome GO:0070062
A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
|
17 |
P16104 (/HDA)
P16104 (/HDA)
P16104 (/HDA)
P16104 (/HDA)
P16104 (/HDA)
P16104 (/HDA)
P16104 (/HDA)
P16104 (/HDA)
P16104 (/HDA)
P16104 (/HDA)
(7 more) |
Site of DNA damage GO:0090734
A region of a chromosome at which DNA damage has occurred. DNA damage signaling and repair proteins accumulate at the lesion to respond to the damage and repair the DNA to form a continuous DNA helix.
|
17 |
P16104 (/IMP)
P16104 (/IMP)
P16104 (/IMP)
P16104 (/IMP)
P16104 (/IMP)
P16104 (/IMP)
P16104 (/IMP)
P16104 (/IMP)
P16104 (/IMP)
P16104 (/IMP)
(7 more) |