PDB 5dm7

PDB Links
Overview

PDB Information

PDB	5DM7
Method	X-RAY DIFFRACTION
Host Organism
Gene Source
Primary Citation	Crystallographic characterization of the ribosomal binding site and molecular mechanism of action of Hygromycin A. Kaminishi, T., Schedlbauer, A., Fabbretti, A., Brandi, L., Ochoa-Lizarralde, B., He, C.G., Milon, P., Connell, S.R., Gualerzi, C.O., Fucini, P. Nucleic Acids Res.
Header	Ribosome
Released	2015-09-08
Resolution	3.000
CATH Insert Date	29 Nov, 2015

PDB Images (61)

5dm7

PDB 5dm7

5dm70

PDB Chain 5dm70

5dm71

PDB Chain 5dm71

5dm72

PDB Chain 5dm72

5dm73

PDB Chain 5dm73

5dm7A

PDB Chain 5dm7A

5dm7B

PDB Chain 5dm7B

5dm7C

PDB Chain 5dm7C

5dm7D

PDB Chain 5dm7D

5dm7E

PDB Chain 5dm7E

5dm7F

PDB Chain 5dm7F

5dm7G

PDB Chain 5dm7G

5dm7H

PDB Chain 5dm7H

5dm7I

PDB Chain 5dm7I

5dm7J

PDB Chain 5dm7J

5dm7K

PDB Chain 5dm7K

5dm7L

PDB Chain 5dm7L

5dm7M

PDB Chain 5dm7M

5dm7N

PDB Chain 5dm7N

5dm7O

PDB Chain 5dm7O

5dm7P

PDB Chain 5dm7P

5dm7Q

PDB Chain 5dm7Q

5dm7R

PDB Chain 5dm7R

5dm7S

PDB Chain 5dm7S

5dm7T

PDB Chain 5dm7T

5dm7U

PDB Chain 5dm7U

5dm7V

PDB Chain 5dm7V

5dm7W

PDB Chain 5dm7W

5dm7X

PDB Chain 5dm7X

5dm7Y

PDB Chain 5dm7Y

5dm7Z

PDB Chain 5dm7Z

5dm7001

CATH Domain 5dm7001

5dm7002

CATH Domain 5dm7002

5dm7100

CATH Domain 5dm7100

5dm7200

CATH Domain 5dm7200

5dm7300

CATH Domain 5dm7300

5dm7B00

CATH Domain 5dm7B00

5dm7C00

CATH Domain 5dm7C00

5dm7D00

CATH Domain 5dm7D00

5dm7E01

CATH Domain 5dm7E01

5dm7E02

CATH Domain 5dm7E02

5dm7F01

CATH Domain 5dm7F01

5dm7F02

CATH Domain 5dm7F02

5dm7G00

CATH Domain 5dm7G00

5dm7H00

CATH Domain 5dm7H00

5dm7I00

CATH Domain 5dm7I00

5dm7J01

CATH Domain 5dm7J01

5dm7K00

CATH Domain 5dm7K00

5dm7L01

CATH Domain 5dm7L01

5dm7M00

CATH Domain 5dm7M00

5dm7O00

CATH Domain 5dm7O00

5dm7P00

CATH Domain 5dm7P00

5dm7Q00

CATH Domain 5dm7Q00

5dm7R00

CATH Domain 5dm7R00

5dm7S01

CATH Domain 5dm7S01

5dm7S02

CATH Domain 5dm7S02

5dm7T01

CATH Domain 5dm7T01

5dm7U00

CATH Domain 5dm7U00

5dm7V00

CATH Domain 5dm7V00

5dm7W00

CATH Domain 5dm7W00

5dm7Z01

CATH Domain 5dm7Z01

PDB Prints

PDB Chains (30)

Chain ID	Date inserted into CATH	CATH Status
0	30 Nov, 2015	Chopped
1	30 Nov, 2015	Chopped
2	30 Nov, 2015	Chopped
3	30 Nov, 2015	Chopped
A	30 Nov, 2015	Holding pen
B	30 Nov, 2015	Chopped
C	30 Nov, 2015	Chopped
D	30 Nov, 2015	Chopped
E	30 Nov, 2015	Chopped
F	30 Nov, 2015	Chopped
G	30 Nov, 2015	Chopped
H	30 Nov, 2015	Chopped
I	30 Nov, 2015	Chopped
J	30 Nov, 2015	Chopped
K	30 Nov, 2015	Chopped
L	30 Nov, 2015	Chopped
M	30 Nov, 2015	Chopped
N	30 Nov, 2015	Holding pen
O	30 Nov, 2015	Chopped
P	30 Nov, 2015	Chopped
Q	30 Nov, 2015	Chopped
R	30 Nov, 2015	Chopped
S	30 Nov, 2015	Chopped
T	30 Nov, 2015	Chopped
U	30 Nov, 2015	Chopped
V	30 Nov, 2015	Chopped
W	30 Nov, 2015	Chopped
X	30 Nov, 2015	Rejected
Y	30 Nov, 2015	Rejected
Z	30 Nov, 2015	Chopped

CATH Domains (30)

Domain ID	Date inserted into CATH	Superfamily	CATH Status
5dm7001	02 Dec, 2015	3.30.190.20	Assigned
5dm7002	02 Dec, 2015	3.40.50.790	Assigned
5dm7100	02 Dec, 2015	2.20.28.120	Assigned
5dm7200	03 Dec, 2015	1.10.287.3980	Assigned
5dm7300	03 Dec, 2015	4.10.410.60	Assigned
5dm7B00	03 Dec, 2015		Holding pen
5dm7C00	03 Dec, 2015	3.40.1370.10	Assigned
5dm7D00	20 Mar, 2016	3.30.1440.10	Assigned
5dm7E01	03 Dec, 2015	3.90.930.12	Assigned
5dm7E02	03 Dec, 2015	3.90.930.12	Assigned
5dm7F01	03 Dec, 2015	3.30.1550.10	Assigned
5dm7F02	03 Dec, 2015	1.10.10.250	Assigned
5dm7G00	07 Dec, 2017		Holding pen
5dm7H00	03 Dec, 2015	2.40.150.20	Assigned
5dm7I00	21 Mar, 2016		Holding pen
5dm7J01	03 Dec, 2015	3.90.1170.10	Assigned
5dm7K00	03 Dec, 2015	3.90.1030.10	Assigned
5dm7L01	03 Dec, 2015	3.30.420.100	Assigned
5dm7M00	03 Dec, 2015		Holding pen
5dm7O00	03 Dec, 2015		Holding pen
5dm7P00	03 Dec, 2015	3.90.470.10	Assigned
5dm7Q00	03 Dec, 2015	3.30.70.330	Assigned
5dm7R00	03 Dec, 2015	2.30.30.30	Assigned
5dm7S01	03 Dec, 2015	2.40.240.10	Assigned
5dm7S02	03 Dec, 2015	2.170.120.20	Assigned
5dm7T01	02 Dec, 2015		Holding pen
5dm7U00	03 Dec, 2015		Holding pen
5dm7V00	03 Dec, 2015		Holding pen
5dm7W00	03 Dec, 2015	3.30.1390.20	Assigned
5dm7Z01	03 Dec, 2015		Holding pen

UniProtKB Entries (27)

Accession	Gene ID	Taxon	Description
Q9RWB4	RL19_DEIRA	Deinococcus radiodurans R1	50S ribosomal protein L19
Q9RSK9	RL15_DEIRA	Deinococcus radiodurans R1	50S ribosomal protein L15
Q9RSL2	RL18_DEIRA	Deinococcus radiodurans R1	50S ribosomal protein L18
Q9RXJ7	RL22_DEIRA	Deinococcus radiodurans R1	50S ribosomal protein L22
Q9RXK1	RL4_DEIRA	Deinococcus radiodurans R1	50S ribosomal protein L4
Q9RXJ1	RL24_DEIRA	Deinococcus radiodurans R1	50S ribosomal protein L24
Q9RSW6	RL35_DEIRA	Deinococcus radiodurans R1	50S ribosomal protein L35
Q9RXJ0	RL5_DEIRA	Deinococcus radiodurans R1	50S ribosomal protein L5
Q9RSJ5	RL17_DEIRA	Deinococcus radiodurans R1	50S ribosomal protein L17
Q9RXJ9	RL2_DEIRA	Deinococcus radiodurans R1	50S ribosomal protein L2
Q9RXK0	RL23_DEIRA	Deinococcus radiodurans R1	50S ribosomal protein L23
Q9RSS8	RL1_DEIRA	Deinococcus radiodurans R1	50S ribosomal protein L1
Q9RSH2	RL34_DEIRA	Deinococcus radiodurans R1	50S ribosomal protein L34
Q9RXJ4	RL29_DEIRA	Deinococcus radiodurans R1	50S ribosomal protein L29
Q9RSW7	RL20_DEIRA	Deinococcus radiodurans R1	50S ribosomal protein L20
Q9RX88	RL25_DEIRA	Deinococcus radiodurans R1	50S ribosomal protein L25
Q9RXJ5	RL16_DEIRA	Deinococcus radiodurans R1	50S ribosomal protein L16
Q9RSL3	RL6_DEIRA	Deinococcus radiodurans R1	50S ribosomal protein L6
Q9RRG8	RL28_DEIRA	Deinococcus radiodurans R1	50S ribosomal protein L28
Q9RXK2	RL3_DEIRA	Deinococcus radiodurans R1	50S ribosomal protein L3
Q9RSL0	RL30_DEIRA	Deinococcus radiodurans R1	50S ribosomal protein L30
P49228	RL32_DEIRA	Deinococcus radiodurans R1	50S ribosomal protein L32
Q9RSS7	RL11_DEIRA	Deinococcus radiodurans R1	50S ribosomal protein L11
Q9RXJ2	RL14_DEIRA	Deinococcus radiodurans R1	50S ribosomal protein L14
Q9RY65	RL27_DEIRA	Deinococcus radiodurans R1	50S ribosomal protein L27
Q9RXY1	RL13_DEIRA	Deinococcus radiodurans R1	50S ribosomal protein L13
Q9RSS4	RL33_DEIRA	Deinococcus radiodurans R1	50S ribosomal protein L33