The name of this superfamily has been modified since the most recent official CATH+ release (v4_4_0). At the point of the last release, this superfamily was named:
"tRNA-splicing ligase RtcB
".
FunFam 2: RNA-splicing ligase RtcB
Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.
There are 3 GO terms relating to "molecular function"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
DNA ligase activity GO:0003909
Catalysis of the formation of a phosphodiester bond between the 3'-hydroxyl group at the end of one DNA chain and the 5'-phosphate group at the end of another. This reaction requires an energy source such as ATP or NAD+.
|
22 |
P46850 (/IDA)
P46850 (/IDA)
P46850 (/IDA)
P46850 (/IDA)
P46850 (/IDA)
P46850 (/IDA)
P46850 (/IDA)
P46850 (/IDA)
P46850 (/IDA)
P46850 (/IDA)
(12 more) |
RNA ligase activity GO:0008452
Catalysis of the formation of a phosphodiester bond between a hydroxyl group at the end of one RNA chain and the 5'-phosphate group at the end of another.
|
22 |
P46850 (/IDA)
P46850 (/IDA)
P46850 (/IDA)
P46850 (/IDA)
P46850 (/IDA)
P46850 (/IDA)
P46850 (/IDA)
P46850 (/IDA)
P46850 (/IDA)
P46850 (/IDA)
(12 more) |
Manganese ion binding GO:0030145
Interacting selectively and non-covalently with manganese (Mn) ions.
|
22 |
P46850 (/IDA)
P46850 (/IDA)
P46850 (/IDA)
P46850 (/IDA)
P46850 (/IDA)
P46850 (/IDA)
P46850 (/IDA)
P46850 (/IDA)
P46850 (/IDA)
P46850 (/IDA)
(12 more) |
There are 5 GO terms relating to "biological process"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
DNA repair GO:0006281
The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
|
22 |
P46850 (/IDA)
P46850 (/IDA)
P46850 (/IDA)
P46850 (/IDA)
P46850 (/IDA)
P46850 (/IDA)
P46850 (/IDA)
P46850 (/IDA)
P46850 (/IDA)
P46850 (/IDA)
(12 more) |
RNA processing GO:0006396
Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
|
22 |
P46850 (/IDA)
P46850 (/IDA)
P46850 (/IDA)
P46850 (/IDA)
P46850 (/IDA)
P46850 (/IDA)
P46850 (/IDA)
P46850 (/IDA)
P46850 (/IDA)
P46850 (/IDA)
(12 more) |
Cellular response to DNA damage stimulus GO:0006974
Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to its DNA from environmental insults or errors during metabolism.
|
22 |
P46850 (/IDA)
P46850 (/IDA)
P46850 (/IDA)
P46850 (/IDA)
P46850 (/IDA)
P46850 (/IDA)
P46850 (/IDA)
P46850 (/IDA)
P46850 (/IDA)
P46850 (/IDA)
(12 more) |
RNA repair GO:0042245
Any process that results in the repair of damaged RNA.
|
22 |
P46850 (/EXP)
P46850 (/EXP)
P46850 (/EXP)
P46850 (/EXP)
P46850 (/EXP)
P46850 (/EXP)
P46850 (/EXP)
P46850 (/EXP)
P46850 (/EXP)
P46850 (/EXP)
(12 more) |
RNA repair GO:0042245
Any process that results in the repair of damaged RNA.
|
22 |
P46850 (/TAS)
P46850 (/TAS)
P46850 (/TAS)
P46850 (/TAS)
P46850 (/TAS)
P46850 (/TAS)
P46850 (/TAS)
P46850 (/TAS)
P46850 (/TAS)
P46850 (/TAS)
(12 more) |
There are 1 GO terms relating to "cellular component"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
|
1 | Q389M0 (/IDA) |