The name of this superfamily has been modified since the most recent official CATH+ release (v4_4_0). At the point of the last release, this superfamily was: waiting to be named.

Functional Families

Overview of the Structural Clusters (SC) and Functional Families within this CATH Superfamily. Clusters with a representative structure are represented by a filled circle.
« Back to all FunFams

FunFam 3: Ribosome assembly factor mrt4

Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.

There are 1 GO terms relating to "molecular function"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Large ribosomal subunit rRNA binding GO:0070180
Interacting selectively and non-covalently with the large ribosomal subunit RNA (LSU rRNA), a constituent of the large ribosomal subunit. In S. cerevisiae, this is the 25S rRNA.
9 P33201 (/ISA) P33201 (/ISA) P33201 (/ISA) P33201 (/ISA) P33201 (/ISA) P33201 (/ISA) P33201 (/ISA) P33201 (/ISA) P33201 (/ISA)

There are 9 GO terms relating to "biological process"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Ribosomal large subunit export from nucleus GO:0000055
The directed movement of a ribosomal large subunit from the nucleus into the cytoplasm.
9 P33201 (/IGI) P33201 (/IGI) P33201 (/IGI) P33201 (/IGI) P33201 (/IGI) P33201 (/IGI) P33201 (/IGI) P33201 (/IGI) P33201 (/IGI)
Ribosomal large subunit export from nucleus GO:0000055
The directed movement of a ribosomal large subunit from the nucleus into the cytoplasm.
9 P33201 (/IMP) P33201 (/IMP) P33201 (/IMP) P33201 (/IMP) P33201 (/IMP) P33201 (/IMP) P33201 (/IMP) P33201 (/IMP) P33201 (/IMP)
Nuclear-transcribed mRNA catabolic process GO:0000956
The chemical reactions and pathways resulting in the breakdown of nuclear-transcribed mRNAs in eukaryotic cells.
9 P33201 (/IMP) P33201 (/IMP) P33201 (/IMP) P33201 (/IMP) P33201 (/IMP) P33201 (/IMP) P33201 (/IMP) P33201 (/IMP) P33201 (/IMP)
RRNA processing GO:0006364
Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules.
9 P33201 (/IMP) P33201 (/IMP) P33201 (/IMP) P33201 (/IMP) P33201 (/IMP) P33201 (/IMP) P33201 (/IMP) P33201 (/IMP) P33201 (/IMP)
Ribosomal large subunit biogenesis GO:0042273
A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of a large ribosomal subunit; includes transport to the sites of protein synthesis.
9 P33201 (/IMP) P33201 (/IMP) P33201 (/IMP) P33201 (/IMP) P33201 (/IMP) P33201 (/IMP) P33201 (/IMP) P33201 (/IMP) P33201 (/IMP)
Cellular response to drug GO:0035690
Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease.
2 Q5AC00 (/IMP) Q5AC00 (/IMP)
Ribosomal large subunit assembly GO:0000027
The aggregation, arrangement and bonding together of constituent RNAs and proteins to form the large ribosomal subunit.
1 Q9USZ6 (/ISO)
Nuclear-transcribed mRNA catabolic process GO:0000956
The chemical reactions and pathways resulting in the breakdown of nuclear-transcribed mRNAs in eukaryotic cells.
1 Q9USZ6 (/ISO)
RRNA processing GO:0006364
Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules.
1 Q9USZ6 (/ISO)

There are 6 GO terms relating to "cellular component"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
10 P33201 (/HDA) P33201 (/HDA) P33201 (/HDA) P33201 (/HDA) P33201 (/HDA) P33201 (/HDA) P33201 (/HDA) P33201 (/HDA) P33201 (/HDA) Q9USZ6 (/HDA)
Nucleolus GO:0005730
A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.
10 P33201 (/HDA) P33201 (/HDA) P33201 (/HDA) P33201 (/HDA) P33201 (/HDA) P33201 (/HDA) P33201 (/HDA) P33201 (/HDA) P33201 (/HDA) Q9USZ6 (/HDA)
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
9 P33201 (/IDA) P33201 (/IDA) P33201 (/IDA) P33201 (/IDA) P33201 (/IDA) P33201 (/IDA) P33201 (/IDA) P33201 (/IDA) P33201 (/IDA)
Nucleolus GO:0005730
A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.
9 P33201 (/IDA) P33201 (/IDA) P33201 (/IDA) P33201 (/IDA) P33201 (/IDA) P33201 (/IDA) P33201 (/IDA) P33201 (/IDA) P33201 (/IDA)
Preribosome, large subunit precursor GO:0030687
A preribosomal complex consisting of 27SA, 27SB, and/or 7S pre-rRNA, 5S rRNA, ribosomal proteins including late-associating large subunit proteins, and associated proteins; a precursor of the eukaryotic cytoplasmic large ribosomal subunit.
9 P33201 (/HDA) P33201 (/HDA) P33201 (/HDA) P33201 (/HDA) P33201 (/HDA) P33201 (/HDA) P33201 (/HDA) P33201 (/HDA) P33201 (/HDA)
Preribosome, large subunit precursor GO:0030687
A preribosomal complex consisting of 27SA, 27SB, and/or 7S pre-rRNA, 5S rRNA, ribosomal proteins including late-associating large subunit proteins, and associated proteins; a precursor of the eukaryotic cytoplasmic large ribosomal subunit.
9 P33201 (/IDA) P33201 (/IDA) P33201 (/IDA) P33201 (/IDA) P33201 (/IDA) P33201 (/IDA) P33201 (/IDA) P33201 (/IDA) P33201 (/IDA)
CATH-Gene3D is a Global Biodata Core Resource Learn more...