The name of this superfamily has been modified since the most recent official CATH+ release (v4_4_0). At the point of the last release, this superfamily was named:
"P-loop containing nucleotide triphosphate hydrolases
".
FunFam 809: ATP-dependent RNA helicase SUB2
Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.
There are 9 GO terms relating to "molecular function"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
RNA binding GO:0003723
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
|
15 |
Q07478 (/IDA)
Q07478 (/IDA)
Q07478 (/IDA)
Q9TY94 (/IDA)
Q9TY94 (/IDA)
Q9TY94 (/IDA)
Q9TY94 (/IDA)
Q9TY94 (/IDA)
Q9TY94 (/IDA)
Q9TY94 (/IDA)
(5 more) |
RNA polymerase II complex binding GO:0000993
Interacting selectively and non-covalently with RNA polymerase II core enzyme, a multisubunit eukaryotic nuclear RNA polymerase typically composed of twelve subunits.
|
7 | Q38CI6 (/ISO) Q38CI6 (/ISO) Q38CI6 (/ISO) Q38CI6 (/ISO) Q4QC38 (/ISO) Q4QC38 (/ISO) Q4QC38 (/ISO) |
RNA helicase activity GO:0003724
Catalysis of the reaction: ATP + H2O = ADP + phosphate; this reaction drives the unwinding of an RNA helix.
|
4 | O13792 (/IGI) Q07478 (/IGI) Q07478 (/IGI) Q07478 (/IGI) |
MRNA binding GO:0003729
Interacting selectively and non-covalently with messenger RNA (mRNA), an intermediate molecule between DNA and protein. mRNA includes UTR and coding sequences, but does not contain introns.
|
4 | Q38CI6 (/IDA) Q38CI6 (/IDA) Q38CI6 (/IDA) Q38CI6 (/IDA) |
Helicase activity GO:0004386
Catalysis of the reaction: ATP + H2O = ADP + phosphate, to drive the unwinding of a DNA or RNA helix.
|
4 | Q38CI6 (/ISM) Q38CI6 (/ISM) Q38CI6 (/ISM) Q38CI6 (/ISM) |
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
|
4 | O13792 (/IPI) Q07478 (/IPI) Q07478 (/IPI) Q07478 (/IPI) |
ATP binding GO:0005524
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
|
4 | Q38CI6 (/ISM) Q38CI6 (/ISM) Q38CI6 (/ISM) Q38CI6 (/ISM) |
RNA helicase activity GO:0003724
Catalysis of the reaction: ATP + H2O = ADP + phosphate; this reaction drives the unwinding of an RNA helix.
|
3 | Q07478 (/ISA) Q07478 (/ISA) Q07478 (/ISA) |
RNA helicase activity GO:0003724
Catalysis of the reaction: ATP + H2O = ADP + phosphate; this reaction drives the unwinding of an RNA helix.
|
1 | Q55CR6 (/ISS) |
There are 11 GO terms relating to "biological process"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
MRNA metabolic process GO:0016071
The chemical reactions and pathways involving mRNA, messenger RNA, which is responsible for carrying the coded genetic 'message', transcribed from DNA, to sites of protein assembly at the ribosomes.
|
7 | Q38CI6 (/ISO) Q38CI6 (/ISO) Q38CI6 (/ISO) Q38CI6 (/ISO) Q4QC38 (/ISO) Q4QC38 (/ISO) Q4QC38 (/ISO) |
MRNA splicing, via spliceosome GO:0000398
The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.
|
3 | Q07478 (/IMP) Q07478 (/IMP) Q07478 (/IMP) |
Transcription-coupled nucleotide-excision repair GO:0006283
The nucleotide-excision repair process that carries out preferential repair of DNA lesions on the actively transcribed strand of the DNA duplex. In addition, the transcription-coupled nucleotide-excision repair pathway is required for the recognition and repair of a small subset of lesions that are not recognized by the global genome nucleotide excision repair pathway.
|
3 | Q07478 (/IMP) Q07478 (/IMP) Q07478 (/IMP) |
Chromatin silencing at telomere GO:0006348
Repression of transcription of telomeric DNA by altering the structure of chromatin.
|
3 | Q07478 (/IMP) Q07478 (/IMP) Q07478 (/IMP) |
Transcription elongation from RNA polymerase II promoter GO:0006368
The extension of an RNA molecule after transcription initiation and promoter clearance at an RNA polymerase II promoter by the addition of ribonucleotides catalyzed by RNA polymerase II.
|
3 | Q07478 (/IMP) Q07478 (/IMP) Q07478 (/IMP) |
MRNA export from nucleus GO:0006406
The directed movement of mRNA from the nucleus to the cytoplasm.
|
3 | Q07478 (/IDA) Q07478 (/IDA) Q07478 (/IDA) |
MRNA export from nucleus GO:0006406
The directed movement of mRNA from the nucleus to the cytoplasm.
|
3 | Q07478 (/IMP) Q07478 (/IMP) Q07478 (/IMP) |
MRNA export from nucleus GO:0006406
The directed movement of mRNA from the nucleus to the cytoplasm.
|
3 | Q07478 (/IPI) Q07478 (/IPI) Q07478 (/IPI) |
MRNA 3'-end processing GO:0031124
Any process involved in forming the mature 3' end of an mRNA molecule.
|
3 | Q07478 (/IMP) Q07478 (/IMP) Q07478 (/IMP) |
MRNA splicing, via spliceosome GO:0000398
The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.
|
1 | Q55CR6 (/ISS) |
MRNA 3'-end processing GO:0031124
Any process involved in forming the mature 3' end of an mRNA molecule.
|
1 | O13792 (/ISO) |
There are 11 GO terms relating to "cellular component"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
17 |
O13792 (/IDA)
Q38CI6 (/IDA)
Q38CI6 (/IDA)
Q38CI6 (/IDA)
Q38CI6 (/IDA)
Q9TY94 (/IDA)
Q9TY94 (/IDA)
Q9TY94 (/IDA)
Q9TY94 (/IDA)
Q9TY94 (/IDA)
(7 more) |
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
|
12 |
Q9TY94 (/IDA)
Q9TY94 (/IDA)
Q9TY94 (/IDA)
Q9TY94 (/IDA)
Q9TY94 (/IDA)
Q9TY94 (/IDA)
Q9TY94 (/IDA)
Q9TY94 (/IDA)
Q9TY94 (/IDA)
Q9TY94 (/IDA)
(2 more) |
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
7 | Q38CI6 (/ISO) Q38CI6 (/ISO) Q38CI6 (/ISO) Q38CI6 (/ISO) Q4QC38 (/ISO) Q4QC38 (/ISO) Q4QC38 (/ISO) |
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
4 | O13792 (/HDA) Q07478 (/HDA) Q07478 (/HDA) Q07478 (/HDA) |
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
|
4 | Q38CI6 (/IDA) Q38CI6 (/IDA) Q38CI6 (/IDA) Q38CI6 (/IDA) |
Transcription export complex GO:0000346
The transcription export (TREX) complex couples transcription elongation by RNA polymerase II to mRNA export. The complex associates with the polymerase and travels with it along the length of the transcribed gene. TREX is composed of the THO transcription elongation complex as well as other proteins that couple THO to mRNA export proteins. The TREX complex is known to be found in a wide range of eukaryotes, including S. cerevisiae and metazoans.
|
3 | Q07478 (/IDA) Q07478 (/IDA) Q07478 (/IDA) |
Chromosome, telomeric region GO:0000781
The terminal region of a linear chromosome that includes the telomeric DNA repeats and associated proteins.
|
3 | Q07478 (/IDA) Q07478 (/IDA) Q07478 (/IDA) |
Spliceosomal complex GO:0005681
Any of a series of ribonucleoprotein complexes that contain snRNA(s) and small nuclear ribonucleoproteins (snRNPs), and are formed sequentially during the spliceosomal splicing of one or more substrate RNAs, and which also contain the RNA substrate(s) from the initial target RNAs of splicing, the splicing intermediate RNA(s), to the final RNA products. During cis-splicing, the initial target RNA is a single, contiguous RNA transcript, whether mRNA, snoRNA, etc., and the released products are a spliced RNA and an excised intron, generally as a lariat structure. During trans-splicing, there are two initial substrate RNAs, the spliced leader RNA and a pre-mRNA.
|
3 | Q07478 (/TAS) Q07478 (/TAS) Q07478 (/TAS) |
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
|
3 | Q07478 (/HDA) Q07478 (/HDA) Q07478 (/HDA) |
Transcription export complex GO:0000346
The transcription export (TREX) complex couples transcription elongation by RNA polymerase II to mRNA export. The complex associates with the polymerase and travels with it along the length of the transcribed gene. TREX is composed of the THO transcription elongation complex as well as other proteins that couple THO to mRNA export proteins. The TREX complex is known to be found in a wide range of eukaryotes, including S. cerevisiae and metazoans.
|
1 | O13792 (/ISO) |
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
1 | Q55CR6 (/ISS) |