The name of this superfamily has been modified since the most recent official CATH+ release (v4_4_0). At the point of the last release, this superfamily was named:
"Glucose-6-phosphate isomerase like protein; domain 1
".
FunFam 12: 40S ribosomal protein SA
Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.
There are 13 GO terms relating to "molecular function"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Ribosome binding GO:0043022
Interacting selectively and non-covalently with any part of a ribosome.
|
11 |
P08865 (/IPI)
P08865 (/IPI)
P08865 (/IPI)
P08865 (/IPI)
P08865 (/IPI)
P08865 (/IPI)
P38979 (/IPI)
P38979 (/IPI)
P38979 (/IPI)
P38979 (/IPI)
(1 more) |
Laminin binding GO:0043236
Interacting selectively and non-covalently with laminins, glycoproteins that are major constituents of the basement membrane of cells.
|
10 | P26452 (/ISS) P26452 (/ISS) P26452 (/ISS) P26452 (/ISS) P50890 (/ISS) P50890 (/ISS) P50890 (/ISS) P50890 (/ISS) P50890 (/ISS) P50890 (/ISS) |
Structural constituent of ribosome GO:0003735
The action of a molecule that contributes to the structural integrity of the ribosome.
|
7 | Q8IJD4 (/IDA) Q8IJD4 (/IDA) Q8IJD4 (/IDA) Q8IJD4 (/IDA) Q8IJD4 (/IDA) Q8IJD4 (/IDA) Q8IJD4 (/IDA) |
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
|
7 | P08865 (/IPI) P08865 (/IPI) P08865 (/IPI) P08865 (/IPI) P08865 (/IPI) P08865 (/IPI) P46769 (/IPI) |
RNA binding GO:0003723
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
|
6 | P08865 (/HDA) P08865 (/HDA) P08865 (/HDA) P08865 (/HDA) P08865 (/HDA) P08865 (/HDA) |
MRNA binding GO:0003729
Interacting selectively and non-covalently with messenger RNA (mRNA), an intermediate molecule between DNA and protein. mRNA includes UTR and coding sequences, but does not contain introns.
|
5 | Q383I8 (/IDA) Q383K0 (/IDA) Q383K0 (/IDA) Q383K0 (/IDA) Q383K0 (/IDA) |
Structural constituent of ribosome GO:0003735
The action of a molecule that contributes to the structural integrity of the ribosome.
|
5 | P38979 (/HDA) P38979 (/HDA) P38979 (/HDA) P38979 (/HDA) P38979 (/HDA) |
Structural constituent of ribosome GO:0003735
The action of a molecule that contributes to the structural integrity of the ribosome.
|
5 | Q383I8 (/ISM) Q383K0 (/ISM) Q383K0 (/ISM) Q383K0 (/ISM) Q383K0 (/ISM) |
Structural constituent of ribosome GO:0003735
The action of a molecule that contributes to the structural integrity of the ribosome.
|
5 | P38979 (/TAS) P38979 (/TAS) P38979 (/TAS) P38979 (/TAS) P38979 (/TAS) |
Ribosome binding GO:0043022
Interacting selectively and non-covalently with any part of a ribosome.
|
4 | P14206 (/ISO) P14206 (/ISO) P14206 (/ISO) P14206 (/ISO) |
Laminin binding GO:0043236
Interacting selectively and non-covalently with laminins, glycoproteins that are major constituents of the basement membrane of cells.
|
4 | P14206 (/IDA) P14206 (/IDA) P14206 (/IDA) P14206 (/IDA) |
Protein-containing complex binding GO:0044877
Interacting selectively and non-covalently with a macromolecular complex.
|
4 | Q383K0 (/IPI) Q383K0 (/IPI) Q383K0 (/IPI) Q383K0 (/IPI) |
Laminin receptor activity GO:0005055
Combining with a laminin, a glycoprotein that constitutes the majority of proteins in the basement membrane, to initiate a change in cell activity.
|
1 | P38983 (/TAS) |
There are 14 GO terms relating to "biological process"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Translation GO:0006412
The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
|
7 | Q8IJD4 (/ISS) Q8IJD4 (/ISS) Q8IJD4 (/ISS) Q8IJD4 (/ISS) Q8IJD4 (/ISS) Q8IJD4 (/ISS) Q8IJD4 (/ISS) |
Nuclear-transcribed mRNA catabolic process, nonsense-mediated decay GO:0000184
The nonsense-mediated decay pathway for nuclear-transcribed mRNAs degrades mRNAs in which an amino-acid codon has changed to a nonsense codon; this prevents the translation of such mRNAs into truncated, and potentially harmful, proteins.
|
6 | P08865 (/TAS) P08865 (/TAS) P08865 (/TAS) P08865 (/TAS) P08865 (/TAS) P08865 (/TAS) |
Translation GO:0006412
The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
|
6 | P08865 (/IC) P08865 (/IC) P08865 (/IC) P08865 (/IC) P08865 (/IC) P08865 (/IC) |
Translational initiation GO:0006413
The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA or circRNA, and an initiation complex that contains the first aminoacyl-tRNA.
|
6 | P08865 (/TAS) P08865 (/TAS) P08865 (/TAS) P08865 (/TAS) P08865 (/TAS) P08865 (/TAS) |
SRP-dependent cotranslational protein targeting to membrane GO:0006614
The targeting of proteins to a membrane that occurs during translation and is dependent upon two key components, the signal-recognition particle (SRP) and the SRP receptor. SRP is a cytosolic particle that transiently binds to the endoplasmic reticulum (ER) signal sequence in a nascent protein, to the large ribosomal unit, and to the SRP receptor in the ER membrane.
|
6 | P08865 (/TAS) P08865 (/TAS) P08865 (/TAS) P08865 (/TAS) P08865 (/TAS) P08865 (/TAS) |
Cell adhesion GO:0007155
The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules.
|
6 | P08865 (/NAS) P08865 (/NAS) P08865 (/NAS) P08865 (/NAS) P08865 (/NAS) P08865 (/NAS) |
Viral transcription GO:0019083
The process by which a viral genome, or part of a viral genome, is transcribed within the host cell.
|
6 | P08865 (/TAS) P08865 (/TAS) P08865 (/TAS) P08865 (/TAS) P08865 (/TAS) P08865 (/TAS) |
Cytoplasmic translation GO:0002181
The chemical reactions and pathways resulting in the formation of a protein in the cytoplasm. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein.
|
5 | P38979 (/IC) P38979 (/IC) P38979 (/IC) P38979 (/IC) P38979 (/IC) |
Cytoplasmic translation GO:0002181
The chemical reactions and pathways resulting in the formation of a protein in the cytoplasm. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein.
|
5 | P38979 (/TAS) P38979 (/TAS) P38979 (/TAS) P38979 (/TAS) P38979 (/TAS) |
Translation GO:0006412
The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
|
5 | Q383I8 (/ISM) Q383K0 (/ISM) Q383K0 (/ISM) Q383K0 (/ISM) Q383K0 (/ISM) |
Cell-cell adhesion GO:0098609
The attachment of one cell to another cell via adhesion molecules.
|
4 | P14206 (/ISO) P14206 (/ISO) P14206 (/ISO) P14206 (/ISO) |
Response to bacterium GO:0009617
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a bacterium.
|
1 | Q55BY1 (/HEP) |
Epithelial cell differentiation GO:0030855
The process in which a relatively unspecialized cell acquires specialized features of an epithelial cell, any of the cells making up an epithelium.
|
1 | P38983 (/IEP) |
Cell-cell adhesion GO:0098609
The attachment of one cell to another cell via adhesion molecules.
|
1 | P38983 (/IDA) |
There are 37 GO terms relating to "cellular component"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Plasma membrane GO:0005886
The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
|
19 |
A6YRY8 (/ISS)
P14206 (/ISS)
P14206 (/ISS)
P14206 (/ISS)
P14206 (/ISS)
P26452 (/ISS)
P26452 (/ISS)
P26452 (/ISS)
P26452 (/ISS)
P38982 (/ISS)
(9 more) |
Cytosolic small ribosomal subunit GO:0022627
The small subunit of a ribosome located in the cytosol.
|
16 |
P08865 (/IDA)
P08865 (/IDA)
P08865 (/IDA)
P08865 (/IDA)
P08865 (/IDA)
P08865 (/IDA)
P38983 (/IDA)
Q4GWZ2 (/IDA)
Q4GWZ2 (/IDA)
Q8IJD4 (/IDA)
(6 more) |
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
|
15 |
P08865 (/IDA)
P08865 (/IDA)
P08865 (/IDA)
P08865 (/IDA)
P08865 (/IDA)
P08865 (/IDA)
P14206 (/IDA)
P14206 (/IDA)
P14206 (/IDA)
P14206 (/IDA)
(5 more) |
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
|
10 | A6YRY8 (/ISS) P14206 (/ISS) P14206 (/ISS) P14206 (/ISS) P14206 (/ISS) P26452 (/ISS) P26452 (/ISS) P26452 (/ISS) P26452 (/ISS) P38982 (/ISS) |
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
6 | P08865 (/TAS) P08865 (/TAS) P08865 (/TAS) P08865 (/TAS) P08865 (/TAS) P08865 (/TAS) |
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
|
6 | P08865 (/TAS) P08865 (/TAS) P08865 (/TAS) P08865 (/TAS) P08865 (/TAS) P08865 (/TAS) |
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
|
6 | P08865 (/TAS) P08865 (/TAS) P08865 (/TAS) P08865 (/TAS) P08865 (/TAS) P08865 (/TAS) |
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
|
6 | P08865 (/TAS) P08865 (/TAS) P08865 (/TAS) P08865 (/TAS) P08865 (/TAS) P08865 (/TAS) |
Plasma membrane GO:0005886
The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
|
6 | P08865 (/IDA) P08865 (/IDA) P08865 (/IDA) P08865 (/IDA) P08865 (/IDA) P08865 (/IDA) |
Membrane GO:0016020
A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
|
6 | P08865 (/HDA) P08865 (/HDA) P08865 (/HDA) P08865 (/HDA) P08865 (/HDA) P08865 (/HDA) |
Extracellular exosome GO:0070062
A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
|
6 | P08865 (/HDA) P08865 (/HDA) P08865 (/HDA) P08865 (/HDA) P08865 (/HDA) P08865 (/HDA) |
Organellar small ribosomal subunit GO:0000314
The smaller of the two subunits of an organellar ribosome.
|
5 | Q383I8 (/ISM) Q383K0 (/ISM) Q383K0 (/ISM) Q383K0 (/ISM) Q383K0 (/ISM) |
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
|
5 | P14206 (/ISO) P14206 (/ISO) P14206 (/ISO) P14206 (/ISO) Q4Q0Q0 (/ISO) |
Ribosome GO:0005840
An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.
|
5 | P38979 (/IDA) P38979 (/IDA) P38979 (/IDA) P38979 (/IDA) P38979 (/IDA) |
Membrane GO:0016020
A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
|
5 | P26452 (/IDA) P26452 (/IDA) P26452 (/IDA) P26452 (/IDA) P38983 (/IDA) |
Cytosolic ribosome GO:0022626
A ribosome located in the cytosol.
|
5 | P38979 (/HDA) P38979 (/HDA) P38979 (/HDA) P38979 (/HDA) P38979 (/HDA) |
Cytosolic small ribosomal subunit GO:0022627
The small subunit of a ribosome located in the cytosol.
|
5 | P38979 (/TAS) P38979 (/TAS) P38979 (/TAS) P38979 (/TAS) P38979 (/TAS) |
Basement membrane GO:0005604
A collagen-containing extracellular matrix consisting of a thin layer of dense material found in various animal tissues interposed between the cells and the adjacent connective tissue. It consists of the basal lamina plus an associated layer of reticulin fibers.
|
4 | P14206 (/ISO) P14206 (/ISO) P14206 (/ISO) P14206 (/ISO) |
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
4 | P14206 (/IDA) P14206 (/IDA) P14206 (/IDA) P14206 (/IDA) |
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
|
4 | P14206 (/ISO) P14206 (/ISO) P14206 (/ISO) P14206 (/ISO) |
Plasma membrane GO:0005886
The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
|
4 | P14206 (/ISO) P14206 (/ISO) P14206 (/ISO) P14206 (/ISO) |
Small ribosomal subunit GO:0015935
The smaller of the two subunits of a ribosome.
|
4 | P14206 (/IDA) P14206 (/IDA) P14206 (/IDA) P14206 (/IDA) |
Membrane GO:0016020
A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
|
4 | P14206 (/ISO) P14206 (/ISO) P14206 (/ISO) P14206 (/ISO) |
Cytosolic small ribosomal subunit GO:0022627
The small subunit of a ribosome located in the cytosol.
|
4 | P14206 (/ISO) P14206 (/ISO) P14206 (/ISO) P14206 (/ISO) |
Neuronal cell body GO:0043025
The portion of a neuron that includes the nucleus, but excludes cell projections such as axons and dendrites.
|
4 | P14206 (/ISO) P14206 (/ISO) P14206 (/ISO) P14206 (/ISO) |
Synapse GO:0045202
The junction between a nerve fiber of one neuron and another neuron, muscle fiber or glial cell. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane.
|
4 | P14206 (/EXP) P14206 (/EXP) P14206 (/EXP) P14206 (/EXP) |
Synapse GO:0045202
The junction between a nerve fiber of one neuron and another neuron, muscle fiber or glial cell. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane.
|
4 | P14206 (/IDA) P14206 (/IDA) P14206 (/IDA) P14206 (/IDA) |
Collagen-containing extracellular matrix GO:0062023
An extracellular matrix consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that provides not only essential physical scaffolding for the cellular constituents but can also initiate crucial biochemical and biomechanical cues required for tissue morphogenesis, differentiation and homeostasis. The components are secreted by cells in the vicinity and form a sheet underlying or overlying cells such as endothelial and epithelial cells.
|
4 | P14206 (/ISO) P14206 (/ISO) P14206 (/ISO) P14206 (/ISO) |
Glutamatergic synapse GO:0098978
A synapse that uses glutamate as a neurotransmitter.
|
4 | P14206 (/EXP) P14206 (/EXP) P14206 (/EXP) P14206 (/EXP) |
Glutamatergic synapse GO:0098978
A synapse that uses glutamate as a neurotransmitter.
|
4 | P14206 (/IDA) P14206 (/IDA) P14206 (/IDA) P14206 (/IDA) |
Cytoplasmic side of rough endoplasmic reticulum membrane GO:0098556
The side (leaflet) of the rough endoplasmic reticulum membrane that faces the cytoplasm.
|
2 | Q4GWZ2 (/IDA) Q4GWZ2 (/IDA) |
Basement membrane GO:0005604
A collagen-containing extracellular matrix consisting of a thin layer of dense material found in various animal tissues interposed between the cells and the adjacent connective tissue. It consists of the basal lamina plus an associated layer of reticulin fibers.
|
1 | P38983 (/IDA) |
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
|
1 | P38983 (/IDA) |
Extracellular matrix GO:0031012
A structure lying external to one or more cells, which provides structural support, biochemical or biomechanical cues for cells or tissues.
|
1 | Q55BY1 (/HDA) |
Neuronal cell body GO:0043025
The portion of a neuron that includes the nucleus, but excludes cell projections such as axons and dendrites.
|
1 | P38983 (/IDA) |
Phagocytic vesicle GO:0045335
A membrane-bounded intracellular vesicle that arises from the ingestion of particulate material by phagocytosis.
|
1 | Q55BY1 (/HDA) |
Collagen-containing extracellular matrix GO:0062023
An extracellular matrix consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that provides not only essential physical scaffolding for the cellular constituents but can also initiate crucial biochemical and biomechanical cues required for tissue morphogenesis, differentiation and homeostasis. The components are secreted by cells in the vicinity and form a sheet underlying or overlying cells such as endothelial and epithelial cells.
|
1 | P38983 (/IDA) |