The name of this superfamily has been modified since the most recent official CATH+ release (v4_4_0). At the point of the last release, this superfamily was named:
"Periplasmic binding protein-like II
".
FunFam 37: HTH-type transcriptional regulator CysB
Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.
There are 6 GO terms relating to "molecular function"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
| GO Term | Annotations | Evidence |
|---|---|---|
|
DNA binding GO:0003677
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
|
148 |
P0A9F3 (/IDA)
P0A9F3 (/IDA)
P0A9F3 (/IDA)
P0A9F3 (/IDA)
P0A9F3 (/IDA)
P0A9F3 (/IDA)
P0A9F3 (/IDA)
P0A9F3 (/IDA)
P0A9F3 (/IDA)
P0A9F3 (/IDA)
(138 more) |
|
Identical protein binding GO:0042802
Interacting selectively and non-covalently with an identical protein or proteins.
|
148 |
P0A9F3 (/IMP)
P0A9F3 (/IMP)
P0A9F3 (/IMP)
P0A9F3 (/IMP)
P0A9F3 (/IMP)
P0A9F3 (/IMP)
P0A9F3 (/IMP)
P0A9F3 (/IMP)
P0A9F3 (/IMP)
P0A9F3 (/IMP)
(138 more) |
|
Transcription regulatory region DNA binding GO:0044212
Interacting selectively and non-covalently with a DNA region that regulates the transcription of a region of DNA, which may be a gene, cistron, or operon. Binding may occur as a sequence specific interaction or as an interaction observed only once a factor has been recruited to the DNA by other factors.
|
24 |
G3XCU6 (/IDA)
G3XCU6 (/IDA)
G3XCU6 (/IDA)
G3XCU6 (/IDA)
G3XCU6 (/IDA)
G3XCU6 (/IDA)
G3XCU6 (/IDA)
G3XCU6 (/IDA)
G3XCU6 (/IDA)
G3XCU6 (/IDA)
(14 more) |
|
Transcription regulatory region sequence-specific DNA binding GO:0000976
Interacting selectively and non-covalently with a specific sequence of DNA that is part of a regulatory region that controls transcription of that section of the DNA. The transcribed region might be described as a gene, cistron, or operon.
|
12 |
G3XCU6 (/IDA)
G3XCU6 (/IDA)
G3XCU6 (/IDA)
G3XCU6 (/IDA)
G3XCU6 (/IDA)
G3XCU6 (/IDA)
G3XCU6 (/IDA)
G3XCU6 (/IDA)
G3XCU6 (/IDA)
G3XCU6 (/IDA)
(2 more) |
|
DNA-binding transcription activator activity GO:0001216
Interacting selectively and non-covalently with a specific DNA sequence in order to activate or increase the frequency, rate or extent of transcription by a RNA polymerase.
|
12 |
G3XCU6 (/IDA)
G3XCU6 (/IDA)
G3XCU6 (/IDA)
G3XCU6 (/IDA)
G3XCU6 (/IDA)
G3XCU6 (/IDA)
G3XCU6 (/IDA)
G3XCU6 (/IDA)
G3XCU6 (/IDA)
G3XCU6 (/IDA)
(2 more) |
|
DNA-binding transcription factor activity GO:0003700
A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons.
|
9 | Q9KQU1 (/ISS) Q9KQU1 (/ISS) Q9KQU1 (/ISS) Q9KQU1 (/ISS) Q9KQU1 (/ISS) Q9KQU1 (/ISS) Q9KQU1 (/ISS) Q9KQU1 (/ISS) Q9KQU1 (/ISS) |
There are 5 GO terms relating to "biological process"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
| GO Term | Annotations | Evidence |
|---|---|---|
|
Response to X-ray GO:0010165
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of X-ray radiation. An X-ray is a form of electromagnetic radiation with a wavelength in the range of 10 nanometers to 100 picometers (corresponding to frequencies in the range 30 PHz to 3 EHz).
|
148 |
P0A9F3 (/IMP)
P0A9F3 (/IMP)
P0A9F3 (/IMP)
P0A9F3 (/IMP)
P0A9F3 (/IMP)
P0A9F3 (/IMP)
P0A9F3 (/IMP)
P0A9F3 (/IMP)
P0A9F3 (/IMP)
P0A9F3 (/IMP)
(138 more) |
|
Cysteine biosynthetic process GO:0019344
The chemical reactions and pathways resulting in the formation of cysteine, 2-amino-3-mercaptopropanoic acid.
|
24 |
G3XCU6 (/IMP)
G3XCU6 (/IMP)
G3XCU6 (/IMP)
G3XCU6 (/IMP)
G3XCU6 (/IMP)
G3XCU6 (/IMP)
G3XCU6 (/IMP)
G3XCU6 (/IMP)
G3XCU6 (/IMP)
G3XCU6 (/IMP)
(14 more) |
|
Positive regulation of transcription, DNA-templated GO:0045893
Any process that activates or increases the frequency, rate or extent of cellular DNA-templated transcription.
|
24 |
G3XCU6 (/IDA)
G3XCU6 (/IDA)
G3XCU6 (/IDA)
G3XCU6 (/IDA)
G3XCU6 (/IDA)
G3XCU6 (/IDA)
G3XCU6 (/IDA)
G3XCU6 (/IDA)
G3XCU6 (/IDA)
G3XCU6 (/IDA)
(14 more) |
|
Positive regulation of sulfur utilization GO:0045883
Any process that activates or increases the frequency, rate or extent of sulfur utilization.
|
13 |
Q47083 (/IDA)
Q47083 (/IDA)
Q47083 (/IDA)
Q47083 (/IDA)
Q47083 (/IDA)
Q47083 (/IDA)
Q47083 (/IDA)
Q47083 (/IDA)
Q47083 (/IDA)
Q47083 (/IDA)
(3 more) |
|
Regulation of transcription, DNA-templated GO:0006355
Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
|
10 | Q604R8 (/ISS) Q9KQU1 (/ISS) Q9KQU1 (/ISS) Q9KQU1 (/ISS) Q9KQU1 (/ISS) Q9KQU1 (/ISS) Q9KQU1 (/ISS) Q9KQU1 (/ISS) Q9KQU1 (/ISS) Q9KQU1 (/ISS) |
There are 2 GO terms relating to "cellular component"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
| GO Term | Annotations | Evidence |
|---|---|---|
|
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
|
148 |
P0A9F3 (/IDA)
P0A9F3 (/IDA)
P0A9F3 (/IDA)
P0A9F3 (/IDA)
P0A9F3 (/IDA)
P0A9F3 (/IDA)
P0A9F3 (/IDA)
P0A9F3 (/IDA)
P0A9F3 (/IDA)
P0A9F3 (/IDA)
(138 more) |
|
Protein-DNA complex GO:0032993
A macromolecular complex containing both protein and DNA molecules.
|
12 |
G3XCU6 (/IDA)
G3XCU6 (/IDA)
G3XCU6 (/IDA)
G3XCU6 (/IDA)
G3XCU6 (/IDA)
G3XCU6 (/IDA)
G3XCU6 (/IDA)
G3XCU6 (/IDA)
G3XCU6 (/IDA)
G3XCU6 (/IDA)
(2 more) |
