CATH Superfamily 3.40.1800.30
The name of this superfamily has been modified since the most recent official CATH+ release (v4_4_0). At the point of the last release, this superfamily was: waiting to be named.
FunFam 1: Histone deacetylase complex subunit
Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.
There are 23 GO terms relating to "molecular function"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
DNA binding GO:0003677
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
|
6 | A4FVD8 (/ISS) Q28H91 (/ISS) Q2TAD4 (/ISS) Q2TAD4 (/ISS) Q5SQF8 (/ISS) Q6NYV5 (/ISS) |
Zinc ion binding GO:0008270
Interacting selectively and non-covalently with zinc (Zn) ions.
|
6 | A4FVD8 (/ISS) Q28H91 (/ISS) Q2TAD4 (/ISS) Q2TAD4 (/ISS) Q5SQF8 (/ISS) Q6NYV5 (/ISS) |
Phosphatidylinositol-5-phosphate binding GO:0010314
Interacting selectively and non-covalently with phosphatidylinositol-5-phosphate, a derivative of phosphatidylinositol in which the inositol ring is phosphorylated at the 5' position.
|
6 | A4FVD8 (/ISS) Q28H91 (/ISS) Q2TAD4 (/ISS) Q2TAD4 (/ISS) Q5SQF8 (/ISS) Q6NYV5 (/ISS) |
Nucleosome binding GO:0031491
Interacting selectively and non-covalently with a nucleosome, a complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures.
|
6 | A4FVD8 (/ISS) Q28H91 (/ISS) Q2TAD4 (/ISS) Q2TAD4 (/ISS) Q5SQF8 (/ISS) Q6NYV5 (/ISS) |
Phosphatidylinositol-3-phosphate binding GO:0032266
Interacting selectively and non-covalently with phosphatidylinositol-3-phosphate, a derivative of phosphatidylinositol in which the inositol ring is phosphorylated at the 3' position.
|
6 | A4FVD8 (/ISS) Q28H91 (/ISS) Q2TAD4 (/ISS) Q2TAD4 (/ISS) Q5SQF8 (/ISS) Q6NYV5 (/ISS) |
Histone binding GO:0042393
Interacting selectively and non-covalently with a histone, any of a group of water-soluble proteins found in association with the DNA of eukaroytic chromosomes. They are involved in the condensation and coiling of chromosomes during cell division and have also been implicated in nonspecific suppression of gene activity.
|
6 | A4FVD8 (/ISS) Q28H91 (/ISS) Q2TAD4 (/ISS) Q2TAD4 (/ISS) Q5SQF8 (/ISS) Q6NYV5 (/ISS) |
Non-sequence-specific DNA binding, bending GO:0044378
The activity of binding selectively and non-covalently to DNA in a sequence-independent manner and distorting the original structure of DNA, typically a straight helix, into a bend, or increasing the bend if the original structure was intrinsically bent due to its sequence.
|
6 | A4FVD8 (/ISS) Q28H91 (/ISS) Q2TAD4 (/ISS) Q2TAD4 (/ISS) Q5SQF8 (/ISS) Q6NYV5 (/ISS) |
Phosphatidylinositol-4-phosphate binding GO:0070273
Interacting selectively and non-covalently with phosphatidylinositol-4-phosphate, a derivative of phosphatidylinositol in which the inositol ring is phosphorylated at the 4' position.
|
6 | A4FVD8 (/ISS) Q28H91 (/ISS) Q2TAD4 (/ISS) Q2TAD4 (/ISS) Q5SQF8 (/ISS) Q6NYV5 (/ISS) |
DNA binding GO:0003677
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
|
4 | Q9HAJ7 (/IDA) Q9HAJ7 (/IDA) Q9HAJ7 (/IDA) Q9HAJ7 (/IDA) |
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
|
4 | Q9HAJ7 (/IPI) Q9HAJ7 (/IPI) Q9HAJ7 (/IPI) Q9HAJ7 (/IPI) |
Zinc ion binding GO:0008270
Interacting selectively and non-covalently with zinc (Zn) ions.
|
4 | Q9HAJ7 (/IDA) Q9HAJ7 (/IDA) Q9HAJ7 (/IDA) Q9HAJ7 (/IDA) |
Phosphatidylinositol-5-phosphate binding GO:0010314
Interacting selectively and non-covalently with phosphatidylinositol-5-phosphate, a derivative of phosphatidylinositol in which the inositol ring is phosphorylated at the 5' position.
|
4 | Q9HAJ7 (/IDA) Q9HAJ7 (/IDA) Q9HAJ7 (/IDA) Q9HAJ7 (/IDA) |
Nucleosome binding GO:0031491
Interacting selectively and non-covalently with a nucleosome, a complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures.
|
4 | Q9HAJ7 (/IDA) Q9HAJ7 (/IDA) Q9HAJ7 (/IDA) Q9HAJ7 (/IDA) |
Histone binding GO:0042393
Interacting selectively and non-covalently with a histone, any of a group of water-soluble proteins found in association with the DNA of eukaroytic chromosomes. They are involved in the condensation and coiling of chromosomes during cell division and have also been implicated in nonspecific suppression of gene activity.
|
4 | Q9HAJ7 (/IDA) Q9HAJ7 (/IDA) Q9HAJ7 (/IDA) Q9HAJ7 (/IDA) |
Non-sequence-specific DNA binding, bending GO:0044378
The activity of binding selectively and non-covalently to DNA in a sequence-independent manner and distorting the original structure of DNA, typically a straight helix, into a bend, or increasing the bend if the original structure was intrinsically bent due to its sequence.
|
4 | Q9HAJ7 (/IDA) Q9HAJ7 (/IDA) Q9HAJ7 (/IDA) Q9HAJ7 (/IDA) |
DNA binding GO:0003677
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
|
1 | Q5SQF8 (/ISO) |
Zinc ion binding GO:0008270
Interacting selectively and non-covalently with zinc (Zn) ions.
|
1 | Q5SQF8 (/ISO) |
Phosphatidylinositol-5-phosphate binding GO:0010314
Interacting selectively and non-covalently with phosphatidylinositol-5-phosphate, a derivative of phosphatidylinositol in which the inositol ring is phosphorylated at the 5' position.
|
1 | Q5SQF8 (/ISO) |
Nucleosome binding GO:0031491
Interacting selectively and non-covalently with a nucleosome, a complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures.
|
1 | Q5SQF8 (/ISO) |
Phosphatidylinositol-3-phosphate binding GO:0032266
Interacting selectively and non-covalently with phosphatidylinositol-3-phosphate, a derivative of phosphatidylinositol in which the inositol ring is phosphorylated at the 3' position.
|
1 | Q5SQF8 (/ISO) |
Histone binding GO:0042393
Interacting selectively and non-covalently with a histone, any of a group of water-soluble proteins found in association with the DNA of eukaroytic chromosomes. They are involved in the condensation and coiling of chromosomes during cell division and have also been implicated in nonspecific suppression of gene activity.
|
1 | Q5SQF8 (/ISO) |
Non-sequence-specific DNA binding, bending GO:0044378
The activity of binding selectively and non-covalently to DNA in a sequence-independent manner and distorting the original structure of DNA, typically a straight helix, into a bend, or increasing the bend if the original structure was intrinsically bent due to its sequence.
|
1 | Q5SQF8 (/ISO) |
Phosphatidylinositol-4-phosphate binding GO:0070273
Interacting selectively and non-covalently with phosphatidylinositol-4-phosphate, a derivative of phosphatidylinositol in which the inositol ring is phosphorylated at the 4' position.
|
1 | Q5SQF8 (/ISO) |
There are 5 GO terms relating to "biological process"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Negative regulation of transcription by RNA polymerase II GO:0000122
Any process that stops, prevents, or reduces the frequency, rate or extent of transcription mediated by RNA polymerase II.
|
6 | A4FVD8 (/ISS) Q28H91 (/ISS) Q2TAD4 (/ISS) Q2TAD4 (/ISS) Q5SQF8 (/ISS) Q6NYV5 (/ISS) |
Regulation of G2/M transition of mitotic cell cycle GO:0010389
Any signalling pathway that modulates the activity of a cell cycle cyclin-dependent protein kinase to modulate the switch from G2 phase to M phase of the mitotic cell cycle.
|
5 | Q9VXB3 (/IMP) Q9VXB3 (/IMP) Q9VXB3 (/IMP) Q9VXB3 (/IMP) Q9VXB3 (/IMP) |
Regulation of G2/M transition of mitotic cell cycle GO:0010389
Any signalling pathway that modulates the activity of a cell cycle cyclin-dependent protein kinase to modulate the switch from G2 phase to M phase of the mitotic cell cycle.
|
2 | Q29IK8 (/ISS) Q29IK8 (/ISS) |
Negative regulation of transcription by RNA polymerase II GO:0000122
Any process that stops, prevents, or reduces the frequency, rate or extent of transcription mediated by RNA polymerase II.
|
1 | Q5SQF8 (/ISO) |
Heart looping GO:0001947
The tube morphogenesis process in which the primitive heart tube loops asymmetrically. This looping brings the primitive heart chambers into alignment preceding their future integration. Heart looping begins with dextral-looping and ends when the main regional divisions of the mature heart and primordium of the great arterial trunks become established preceeding septation.
|
1 | Q6NYV5 (/IMP) |
There are 8 GO terms relating to "cellular component"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Histone deacetylase complex GO:0000118
A protein complex that possesses histone deacetylase activity.
|
13 |
A4FVD8 (/ISS)
Q28H91 (/ISS)
Q29IK8 (/ISS)
Q29IK8 (/ISS)
Q2TAD4 (/ISS)
Q2TAD4 (/ISS)
Q5SQF8 (/ISS)
Q6NYV5 (/ISS)
Q9VXB3 (/ISS)
Q9VXB3 (/ISS)
(3 more) |
Nucleolus GO:0005730
A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.
|
6 | A4FVD8 (/ISS) Q28H91 (/ISS) Q2TAD4 (/ISS) Q2TAD4 (/ISS) Q5SQF8 (/ISS) Q6NYV5 (/ISS) |
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
4 | Q9HAJ7 (/IDA) Q9HAJ7 (/IDA) Q9HAJ7 (/IDA) Q9HAJ7 (/IDA) |
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
|
4 | Q9HAJ7 (/TAS) Q9HAJ7 (/TAS) Q9HAJ7 (/TAS) Q9HAJ7 (/TAS) |
Nucleolus GO:0005730
A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.
|
4 | Q9HAJ7 (/IDA) Q9HAJ7 (/IDA) Q9HAJ7 (/IDA) Q9HAJ7 (/IDA) |
Histone deacetylase complex GO:0000118
A protein complex that possesses histone deacetylase activity.
|
1 | Q5SQF8 (/ISO) |
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
1 | Q5SQF8 (/ISO) |
Nucleolus GO:0005730
A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.
|
1 | Q5SQF8 (/ISO) |