CATH Superfamily 3.30.720.90
The name of this superfamily has been modified since the most recent official CATH+ release (v4_4_0). At the point of the last release, this superfamily was: waiting to be named.
FunFam 1: 60S ribosomal protein L38
Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.
There are 6 GO terms relating to "molecular function"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Structural constituent of ribosome GO:0003735
The action of a molecule that contributes to the structural integrity of the ribosome.
|
101 |
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
(91 more) |
RNA binding GO:0003723
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
|
95 |
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
(85 more) |
Structural constituent of ribosome GO:0003735
The action of a molecule that contributes to the structural integrity of the ribosome.
|
95 |
P63173 (/NAS)
P63173 (/NAS)
P63173 (/NAS)
P63173 (/NAS)
P63173 (/NAS)
P63173 (/NAS)
P63173 (/NAS)
P63173 (/NAS)
P63173 (/NAS)
P63173 (/NAS)
(85 more) |
Structural constituent of ribosome GO:0003735
The action of a molecule that contributes to the structural integrity of the ribosome.
|
7 | O22860 (/IDA) O22860 (/IDA) O22860 (/IDA) O22860 (/IDA) O22860 (/IDA) O22860 (/IDA) O22860 (/IDA) |
Structural constituent of ribosome GO:0003735
The action of a molecule that contributes to the structural integrity of the ribosome.
|
6 | Q9W5N2 (/HDA) Q9W5N2 (/HDA) Q9W5N2 (/HDA) Q9W5N2 (/HDA) Q9W5N2 (/HDA) Q9W5N2 (/HDA) |
Structural constituent of ribosome GO:0003735
The action of a molecule that contributes to the structural integrity of the ribosome.
|
2 | Q09900 (/ISO) Q9USR7 (/ISO) |
Showing 1 to 6 of 6 entries
There are 19 GO terms relating to "biological process"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Nuclear-transcribed mRNA catabolic process, nonsense-mediated decay GO:0000184
The nonsense-mediated decay pathway for nuclear-transcribed mRNAs degrades mRNAs in which an amino-acid codon has changed to a nonsense codon; this prevents the translation of such mRNAs into truncated, and potentially harmful, proteins.
|
95 |
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
(85 more) |
Cytoplasmic translation GO:0002181
The chemical reactions and pathways resulting in the formation of a protein in the cytoplasm. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein.
|
95 |
P63173 (/IDA)
P63173 (/IDA)
P63173 (/IDA)
P63173 (/IDA)
P63173 (/IDA)
P63173 (/IDA)
P63173 (/IDA)
P63173 (/IDA)
P63173 (/IDA)
P63173 (/IDA)
(85 more) |
Translation GO:0006412
The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
|
95 |
P63173 (/NAS)
P63173 (/NAS)
P63173 (/NAS)
P63173 (/NAS)
P63173 (/NAS)
P63173 (/NAS)
P63173 (/NAS)
P63173 (/NAS)
P63173 (/NAS)
P63173 (/NAS)
(85 more) |
Translation GO:0006412
The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
|
95 |
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
(85 more) |
Translational initiation GO:0006413
The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA or circRNA, and an initiation complex that contains the first aminoacyl-tRNA.
|
95 |
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
(85 more) |
SRP-dependent cotranslational protein targeting to membrane GO:0006614
The targeting of proteins to a membrane that occurs during translation and is dependent upon two key components, the signal-recognition particle (SRP) and the SRP receptor. SRP is a cytosolic particle that transiently binds to the endoplasmic reticulum (ER) signal sequence in a nascent protein, to the large ribosomal unit, and to the SRP receptor in the ER membrane.
|
95 |
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
(85 more) |
Viral transcription GO:0019083
The process by which a viral genome, or part of a viral genome, is transcribed within the host cell.
|
95 |
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
(85 more) |
Chordate embryonic development GO:0043009
The process whose specific outcome is the progression of the embryo over time, from zygote formation through a stage including a notochord and neural tube until birth or egg hatching.
|
95 |
Q6DGL9 (/IMP)
Q6DGL9 (/IMP)
Q6DGL9 (/IMP)
Q6DGL9 (/IMP)
Q6DGL9 (/IMP)
Q6DGL9 (/IMP)
Q6DGL9 (/IMP)
Q6DGL9 (/IMP)
Q6DGL9 (/IMP)
Q6DGL9 (/IMP)
(85 more) |
Cytoplasmic translation GO:0002181
The chemical reactions and pathways resulting in the formation of a protein in the cytoplasm. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein.
|
6 | Q9W5N2 (/IC) Q9W5N2 (/IC) Q9W5N2 (/IC) Q9W5N2 (/IC) Q9W5N2 (/IC) Q9W5N2 (/IC) |
Cytoplasmic translation GO:0002181
The chemical reactions and pathways resulting in the formation of a protein in the cytoplasm. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein.
|
6 | Q09900 (/ISO) Q9JJI8 (/ISO) Q9JJI8 (/ISO) Q9JJI8 (/ISO) Q9JJI8 (/ISO) Q9USR7 (/ISO) |
Showing 1 to 10 of 19 entries
There are 17 GO terms relating to "cellular component"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Cytosolic large ribosomal subunit GO:0022625
The large subunit of a ribosome located in the cytosol.
|
197 |
O22860 (/IDA)
O22860 (/IDA)
O22860 (/IDA)
O22860 (/IDA)
O22860 (/IDA)
O22860 (/IDA)
O22860 (/IDA)
P63173 (/IDA)
P63173 (/IDA)
P63173 (/IDA)
(187 more) |
Cytosolic large ribosomal subunit GO:0022625
The large subunit of a ribosome located in the cytosol.
|
101 |
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
(91 more) |
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
|
95 |
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
(85 more) |
Focal adhesion GO:0005925
Small region on the surface of a cell that anchors the cell to the extracellular matrix and that forms a point of termination of actin filaments.
|
95 |
P63173 (/HDA)
P63173 (/HDA)
P63173 (/HDA)
P63173 (/HDA)
P63173 (/HDA)
P63173 (/HDA)
P63173 (/HDA)
P63173 (/HDA)
P63173 (/HDA)
P63173 (/HDA)
(85 more) |
Postsynaptic density GO:0014069
An electron dense network of proteins within and adjacent to the postsynaptic membrane of an asymmetric, neuron-neuron synapse. Its major components include neurotransmitter receptors and the proteins that spatially and functionally organize them such as anchoring and scaffolding molecules, signaling enzymes and cytoskeletal components.
|
95 |
P63173 (/EXP)
P63173 (/EXP)
P63173 (/EXP)
P63173 (/EXP)
P63173 (/EXP)
P63173 (/EXP)
P63173 (/EXP)
P63173 (/EXP)
P63173 (/EXP)
P63173 (/EXP)
(85 more) |
Postsynaptic density GO:0014069
An electron dense network of proteins within and adjacent to the postsynaptic membrane of an asymmetric, neuron-neuron synapse. Its major components include neurotransmitter receptors and the proteins that spatially and functionally organize them such as anchoring and scaffolding molecules, signaling enzymes and cytoskeletal components.
|
95 |
P63173 (/IDA)
P63173 (/IDA)
P63173 (/IDA)
P63173 (/IDA)
P63173 (/IDA)
P63173 (/IDA)
P63173 (/IDA)
P63173 (/IDA)
P63173 (/IDA)
P63173 (/IDA)
(85 more) |
Cytosolic large ribosomal subunit GO:0022625
The large subunit of a ribosome located in the cytosol.
|
95 |
P63173 (/HDA)
P63173 (/HDA)
P63173 (/HDA)
P63173 (/HDA)
P63173 (/HDA)
P63173 (/HDA)
P63173 (/HDA)
P63173 (/HDA)
P63173 (/HDA)
P63173 (/HDA)
(85 more) |
Polysomal ribosome GO:0042788
A ribosome bound to mRNA that forms part of a polysome.
|
95 |
P63173 (/IDA)
P63173 (/IDA)
P63173 (/IDA)
P63173 (/IDA)
P63173 (/IDA)
P63173 (/IDA)
P63173 (/IDA)
P63173 (/IDA)
P63173 (/IDA)
P63173 (/IDA)
(85 more) |
Cytosolic ribosome GO:0022626
A ribosome located in the cytosol.
|
7 | O22860 (/IDA) O22860 (/IDA) O22860 (/IDA) O22860 (/IDA) O22860 (/IDA) O22860 (/IDA) O22860 (/IDA) |
Cytosolic large ribosomal subunit GO:0022625
The large subunit of a ribosome located in the cytosol.
|
6 | Q09900 (/ISO) Q9JJI8 (/ISO) Q9JJI8 (/ISO) Q9JJI8 (/ISO) Q9JJI8 (/ISO) Q9USR7 (/ISO) |
Showing 1 to 10 of 17 entries