CATH Superfamily 3.30.720.90
The name of this superfamily has been modified since the most recent official CATH+ release (v4_4_0). At the point of the last release, this superfamily was: waiting to be named.
FunFam 1: 60S ribosomal protein L38
Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.
There are 6 GO terms relating to "molecular function"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Structural constituent of ribosome GO:0003735
The action of a molecule that contributes to the structural integrity of the ribosome.
|
101 |
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
(91 more) |
RNA binding GO:0003723
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
|
95 |
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
(85 more) |
Structural constituent of ribosome GO:0003735
The action of a molecule that contributes to the structural integrity of the ribosome.
|
95 |
P63173 (/NAS)
P63173 (/NAS)
P63173 (/NAS)
P63173 (/NAS)
P63173 (/NAS)
P63173 (/NAS)
P63173 (/NAS)
P63173 (/NAS)
P63173 (/NAS)
P63173 (/NAS)
(85 more) |
Structural constituent of ribosome GO:0003735
The action of a molecule that contributes to the structural integrity of the ribosome.
|
7 | O22860 (/IDA) O22860 (/IDA) O22860 (/IDA) O22860 (/IDA) O22860 (/IDA) O22860 (/IDA) O22860 (/IDA) |
Structural constituent of ribosome GO:0003735
The action of a molecule that contributes to the structural integrity of the ribosome.
|
6 | Q9W5N2 (/HDA) Q9W5N2 (/HDA) Q9W5N2 (/HDA) Q9W5N2 (/HDA) Q9W5N2 (/HDA) Q9W5N2 (/HDA) |
Structural constituent of ribosome GO:0003735
The action of a molecule that contributes to the structural integrity of the ribosome.
|
2 | Q09900 (/ISO) Q9USR7 (/ISO) |
There are 19 GO terms relating to "biological process"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Nuclear-transcribed mRNA catabolic process, nonsense-mediated decay GO:0000184
The nonsense-mediated decay pathway for nuclear-transcribed mRNAs degrades mRNAs in which an amino-acid codon has changed to a nonsense codon; this prevents the translation of such mRNAs into truncated, and potentially harmful, proteins.
|
95 |
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
(85 more) |
Cytoplasmic translation GO:0002181
The chemical reactions and pathways resulting in the formation of a protein in the cytoplasm. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein.
|
95 |
P63173 (/IDA)
P63173 (/IDA)
P63173 (/IDA)
P63173 (/IDA)
P63173 (/IDA)
P63173 (/IDA)
P63173 (/IDA)
P63173 (/IDA)
P63173 (/IDA)
P63173 (/IDA)
(85 more) |
Translation GO:0006412
The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
|
95 |
P63173 (/NAS)
P63173 (/NAS)
P63173 (/NAS)
P63173 (/NAS)
P63173 (/NAS)
P63173 (/NAS)
P63173 (/NAS)
P63173 (/NAS)
P63173 (/NAS)
P63173 (/NAS)
(85 more) |
Translation GO:0006412
The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
|
95 |
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
(85 more) |
Translational initiation GO:0006413
The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA or circRNA, and an initiation complex that contains the first aminoacyl-tRNA.
|
95 |
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
(85 more) |
SRP-dependent cotranslational protein targeting to membrane GO:0006614
The targeting of proteins to a membrane that occurs during translation and is dependent upon two key components, the signal-recognition particle (SRP) and the SRP receptor. SRP is a cytosolic particle that transiently binds to the endoplasmic reticulum (ER) signal sequence in a nascent protein, to the large ribosomal unit, and to the SRP receptor in the ER membrane.
|
95 |
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
(85 more) |
Viral transcription GO:0019083
The process by which a viral genome, or part of a viral genome, is transcribed within the host cell.
|
95 |
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
(85 more) |
Chordate embryonic development GO:0043009
The process whose specific outcome is the progression of the embryo over time, from zygote formation through a stage including a notochord and neural tube until birth or egg hatching.
|
95 |
Q6DGL9 (/IMP)
Q6DGL9 (/IMP)
Q6DGL9 (/IMP)
Q6DGL9 (/IMP)
Q6DGL9 (/IMP)
Q6DGL9 (/IMP)
Q6DGL9 (/IMP)
Q6DGL9 (/IMP)
Q6DGL9 (/IMP)
Q6DGL9 (/IMP)
(85 more) |
Cytoplasmic translation GO:0002181
The chemical reactions and pathways resulting in the formation of a protein in the cytoplasm. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein.
|
6 | Q9W5N2 (/IC) Q9W5N2 (/IC) Q9W5N2 (/IC) Q9W5N2 (/IC) Q9W5N2 (/IC) Q9W5N2 (/IC) |
Cytoplasmic translation GO:0002181
The chemical reactions and pathways resulting in the formation of a protein in the cytoplasm. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein.
|
6 | Q09900 (/ISO) Q9JJI8 (/ISO) Q9JJI8 (/ISO) Q9JJI8 (/ISO) Q9JJI8 (/ISO) Q9USR7 (/ISO) |
Cytoplasmic translation GO:0002181
The chemical reactions and pathways resulting in the formation of a protein in the cytoplasm. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein.
|
6 | Q9W5N2 (/TAS) Q9W5N2 (/TAS) Q9W5N2 (/TAS) Q9W5N2 (/TAS) Q9W5N2 (/TAS) Q9W5N2 (/TAS) |
Skeletal system development GO:0001501
The process whose specific outcome is the progression of the skeleton over time, from its formation to the mature structure. The skeleton is the bony framework of the body in vertebrates (endoskeleton) or the hard outer envelope of insects (exoskeleton or dermoskeleton).
|
4 | Q9JJI8 (/IMP) Q9JJI8 (/IMP) Q9JJI8 (/IMP) Q9JJI8 (/IMP) |
Skeletal system development GO:0001501
The process whose specific outcome is the progression of the skeleton over time, from its formation to the mature structure. The skeleton is the bony framework of the body in vertebrates (endoskeleton) or the hard outer envelope of insects (exoskeleton or dermoskeleton).
|
4 | Q9JJI8 (/TAS) Q9JJI8 (/TAS) Q9JJI8 (/TAS) Q9JJI8 (/TAS) |
Ossification GO:0001503
The formation of bone or of a bony substance, or the conversion of fibrous tissue or of cartilage into bone or a bony substance.
|
4 | Q9JJI8 (/IMP) Q9JJI8 (/IMP) Q9JJI8 (/IMP) Q9JJI8 (/IMP) |
Regulation of translation GO:0006417
Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of proteins by the translation of mRNA or circRNA.
|
4 | Q9JJI8 (/IMP) Q9JJI8 (/IMP) Q9JJI8 (/IMP) Q9JJI8 (/IMP) |
Sensory perception of sound GO:0007605
The series of events required for an organism to receive an auditory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Sonic stimuli are detected in the form of vibrations and are processed to form a sound.
|
4 | Q9JJI8 (/IMP) Q9JJI8 (/IMP) Q9JJI8 (/IMP) Q9JJI8 (/IMP) |
90S preribosome assembly GO:0034463
The aggregation, arrangement and bonding together of proteins and RNA molecules to form a 90S preribosome. The 90S preribosome represents the complex that forms on the primary rRNA transcript before it splits into the small subunit and large subunit portions.
|
4 | Q9JJI8 (/IDA) Q9JJI8 (/IDA) Q9JJI8 (/IDA) Q9JJI8 (/IDA) |
Middle ear morphogenesis GO:0042474
The process in which the anatomical structures of the middle ear are generated and organized. The middle ear is the air-filled cavity within the skull of vertebrates that lies between the outer ear and the inner ear. It is linked to the pharynx (and therefore to outside air) via the Eustachian tube and in mammals contains the three ear ossicles, which transmit auditory vibrations from the outer ear (via the tympanum) to the inner ear (via the oval window).
|
4 | Q9JJI8 (/IMP) Q9JJI8 (/IMP) Q9JJI8 (/IMP) Q9JJI8 (/IMP) |
Axial mesoderm development GO:0048318
The process whose specific outcome is the progression of the axial mesoderm over time, from its formation to the mature structure. The axial mesoderm includes the prechordal mesoderm and the chordamesoderm. It gives rise to the prechordal plate and to the notochord.
|
4 | Q9JJI8 (/IMP) Q9JJI8 (/IMP) Q9JJI8 (/IMP) Q9JJI8 (/IMP) |
There are 17 GO terms relating to "cellular component"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Cytosolic large ribosomal subunit GO:0022625
The large subunit of a ribosome located in the cytosol.
|
197 |
O22860 (/IDA)
O22860 (/IDA)
O22860 (/IDA)
O22860 (/IDA)
O22860 (/IDA)
O22860 (/IDA)
O22860 (/IDA)
P63173 (/IDA)
P63173 (/IDA)
P63173 (/IDA)
(187 more) |
Cytosolic large ribosomal subunit GO:0022625
The large subunit of a ribosome located in the cytosol.
|
101 |
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
(91 more) |
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
|
95 |
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
P63173 (/TAS)
(85 more) |
Focal adhesion GO:0005925
Small region on the surface of a cell that anchors the cell to the extracellular matrix and that forms a point of termination of actin filaments.
|
95 |
P63173 (/HDA)
P63173 (/HDA)
P63173 (/HDA)
P63173 (/HDA)
P63173 (/HDA)
P63173 (/HDA)
P63173 (/HDA)
P63173 (/HDA)
P63173 (/HDA)
P63173 (/HDA)
(85 more) |
Postsynaptic density GO:0014069
An electron dense network of proteins within and adjacent to the postsynaptic membrane of an asymmetric, neuron-neuron synapse. Its major components include neurotransmitter receptors and the proteins that spatially and functionally organize them such as anchoring and scaffolding molecules, signaling enzymes and cytoskeletal components.
|
95 |
P63173 (/EXP)
P63173 (/EXP)
P63173 (/EXP)
P63173 (/EXP)
P63173 (/EXP)
P63173 (/EXP)
P63173 (/EXP)
P63173 (/EXP)
P63173 (/EXP)
P63173 (/EXP)
(85 more) |
Postsynaptic density GO:0014069
An electron dense network of proteins within and adjacent to the postsynaptic membrane of an asymmetric, neuron-neuron synapse. Its major components include neurotransmitter receptors and the proteins that spatially and functionally organize them such as anchoring and scaffolding molecules, signaling enzymes and cytoskeletal components.
|
95 |
P63173 (/IDA)
P63173 (/IDA)
P63173 (/IDA)
P63173 (/IDA)
P63173 (/IDA)
P63173 (/IDA)
P63173 (/IDA)
P63173 (/IDA)
P63173 (/IDA)
P63173 (/IDA)
(85 more) |
Cytosolic large ribosomal subunit GO:0022625
The large subunit of a ribosome located in the cytosol.
|
95 |
P63173 (/HDA)
P63173 (/HDA)
P63173 (/HDA)
P63173 (/HDA)
P63173 (/HDA)
P63173 (/HDA)
P63173 (/HDA)
P63173 (/HDA)
P63173 (/HDA)
P63173 (/HDA)
(85 more) |
Polysomal ribosome GO:0042788
A ribosome bound to mRNA that forms part of a polysome.
|
95 |
P63173 (/IDA)
P63173 (/IDA)
P63173 (/IDA)
P63173 (/IDA)
P63173 (/IDA)
P63173 (/IDA)
P63173 (/IDA)
P63173 (/IDA)
P63173 (/IDA)
P63173 (/IDA)
(85 more) |
Cytosolic ribosome GO:0022626
A ribosome located in the cytosol.
|
7 | O22860 (/IDA) O22860 (/IDA) O22860 (/IDA) O22860 (/IDA) O22860 (/IDA) O22860 (/IDA) O22860 (/IDA) |
Cytosolic large ribosomal subunit GO:0022625
The large subunit of a ribosome located in the cytosol.
|
6 | Q09900 (/ISO) Q9JJI8 (/ISO) Q9JJI8 (/ISO) Q9JJI8 (/ISO) Q9JJI8 (/ISO) Q9USR7 (/ISO) |
Cytosolic ribosome GO:0022626
A ribosome located in the cytosol.
|
6 | Q9W5N2 (/HDA) Q9W5N2 (/HDA) Q9W5N2 (/HDA) Q9W5N2 (/HDA) Q9W5N2 (/HDA) Q9W5N2 (/HDA) |
Postsynaptic density GO:0014069
An electron dense network of proteins within and adjacent to the postsynaptic membrane of an asymmetric, neuron-neuron synapse. Its major components include neurotransmitter receptors and the proteins that spatially and functionally organize them such as anchoring and scaffolding molecules, signaling enzymes and cytoskeletal components.
|
4 | Q9JJI8 (/ISO) Q9JJI8 (/ISO) Q9JJI8 (/ISO) Q9JJI8 (/ISO) |
Eukaryotic 80S initiation complex GO:0033291
A protein complex composed of the large and small ribosomal subunits, methionyl-initiatior tRNA, and the capped mRNA. The initiator tRNA is positioned at the ribosomal P site at the AUG codon corresponding to the beginning of the coding region.
|
4 | Q9JJI8 (/IDA) Q9JJI8 (/IDA) Q9JJI8 (/IDA) Q9JJI8 (/IDA) |
Polysomal ribosome GO:0042788
A ribosome bound to mRNA that forms part of a polysome.
|
4 | Q9JJI8 (/ISO) Q9JJI8 (/ISO) Q9JJI8 (/ISO) Q9JJI8 (/ISO) |
Synapse GO:0045202
The junction between a nerve fiber of one neuron and another neuron, muscle fiber or glial cell. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane.
|
4 | Q9JJI8 (/EXP) Q9JJI8 (/EXP) Q9JJI8 (/EXP) Q9JJI8 (/EXP) |
Synapse GO:0045202
The junction between a nerve fiber of one neuron and another neuron, muscle fiber or glial cell. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane.
|
4 | Q9JJI8 (/IDA) Q9JJI8 (/IDA) Q9JJI8 (/IDA) Q9JJI8 (/IDA) |
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
|
2 | Q09900 (/HDA) Q9USR7 (/HDA) |