The name of this superfamily has been modified since the most recent official CATH+ release (v4_4_0). At the point of the last release, this superfamily was: waiting to be named.

Functional Families

Overview of the Structural Clusters (SC) and Functional Families within this CATH Superfamily. Clusters with a representative structure are represented by a filled circle.
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FunFam 53: Serine/arginine-rich splicing factor 1

Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.

There are 18 GO terms relating to "molecular function"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO TermAnnotationsEvidence
RNA binding GO:0003723
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
140 Q0VCY7 (/ISS) Q0VCY7 (/ISS) Q0VCY7 (/ISS) Q0VCY7 (/ISS) Q0VCY7 (/ISS) Q0VCY7 (/ISS) Q0VCY7 (/ISS) Q0VCY7 (/ISS) Q0VCY7 (/ISS) Q0VCY7 (/ISS)
(130 more)
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
108 Q07955 (/IPI) Q07955 (/IPI) Q07955 (/IPI) Q07955 (/IPI) Q07955 (/IPI) Q07955 (/IPI) Q07955 (/IPI) Q07955 (/IPI) Q07955 (/IPI) Q07955 (/IPI)
(98 more)
RNA binding GO:0003723
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
57 Q07955 (/HDA) Q07955 (/HDA) Q07955 (/HDA) Q07955 (/HDA) Q07955 (/HDA) Q07955 (/HDA) Q07955 (/HDA) Q07955 (/HDA) Q07955 (/HDA) Q07955 (/HDA)
(47 more)
MRNA binding GO:0003729
Interacting selectively and non-covalently with messenger RNA (mRNA), an intermediate molecule between DNA and protein. mRNA includes UTR and coding sequences, but does not contain introns.
49 Q07955 (/IDA) Q07955 (/IDA) Q07955 (/IDA) Q07955 (/IDA) Q07955 (/IDA) Q07955 (/IDA) Q07955 (/IDA) Q07955 (/IDA) Q07955 (/IDA) Q07955 (/IDA)
(39 more)
RNA binding GO:0003723
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
46 Q07955 (/IDA) Q07955 (/IDA) Q07955 (/IDA) Q07955 (/IDA) Q07955 (/IDA) Q07955 (/IDA) Q07955 (/IDA) Q07955 (/IDA) Q07955 (/IDA) Q07955 (/IDA)
(36 more)
RNA binding GO:0003723
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
46 Q07955 (/IPI) Q07955 (/IPI) Q07955 (/IPI) Q07955 (/IPI) Q07955 (/IPI) Q07955 (/IPI) Q07955 (/IPI) Q07955 (/IPI) Q07955 (/IPI) Q07955 (/IPI)
(36 more)
RNA binding GO:0003723
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
46 Q6PDM2 (/ISO) Q6PDM2 (/ISO) Q6PDM2 (/ISO) Q6PDM2 (/ISO) Q6PDM2 (/ISO) Q6PDM2 (/ISO) Q6PDM2 (/ISO) Q6PDM2 (/ISO) Q6PDM2 (/ISO) Q6PDM2 (/ISO)
(36 more)
MRNA binding GO:0003729
Interacting selectively and non-covalently with messenger RNA (mRNA), an intermediate molecule between DNA and protein. mRNA includes UTR and coding sequences, but does not contain introns.
46 Q6PDM2 (/ISO) Q6PDM2 (/ISO) Q6PDM2 (/ISO) Q6PDM2 (/ISO) Q6PDM2 (/ISO) Q6PDM2 (/ISO) Q6PDM2 (/ISO) Q6PDM2 (/ISO) Q6PDM2 (/ISO) Q6PDM2 (/ISO)
(36 more)
Protein kinase B binding GO:0043422
Interacting selectively and non-covalently with protein kinase B, an intracellular kinase that is important in regulating glucose metabolism.
46 D4A9L2 (/IPI) D4A9L2 (/IPI) D4A9L2 (/IPI) D4A9L2 (/IPI) D4A9L2 (/IPI) D4A9L2 (/IPI) D4A9L2 (/IPI) D4A9L2 (/IPI) D4A9L2 (/IPI) D4A9L2 (/IPI)
(36 more)
Protein kinase B binding GO:0043422
Interacting selectively and non-covalently with protein kinase B, an intracellular kinase that is important in regulating glucose metabolism.
46 Q6PDM2 (/ISO) Q6PDM2 (/ISO) Q6PDM2 (/ISO) Q6PDM2 (/ISO) Q6PDM2 (/ISO) Q6PDM2 (/ISO) Q6PDM2 (/ISO) Q6PDM2 (/ISO) Q6PDM2 (/ISO) Q6PDM2 (/ISO)
(36 more)
Showing 1 to 10 of 18 entries

There are 35 GO terms relating to "biological process"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO TermAnnotationsEvidence
MRNA 5'-splice site recognition GO:0000395
Recognition of the intron 5'-splice site by components of the assembling spliceosome.
139 Q0VCY7 (/ISS) Q0VCY7 (/ISS) Q0VCY7 (/ISS) Q0VCY7 (/ISS) Q0VCY7 (/ISS) Q0VCY7 (/ISS) Q0VCY7 (/ISS) Q0VCY7 (/ISS) Q0VCY7 (/ISS) Q0VCY7 (/ISS)
(129 more)
MRNA splicing, via spliceosome GO:0000398
The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.
57 Q07955 (/TAS) Q07955 (/TAS) Q07955 (/TAS) Q07955 (/TAS) Q07955 (/TAS) Q07955 (/TAS) Q07955 (/TAS) Q07955 (/TAS) Q07955 (/TAS) Q07955 (/TAS)
(47 more)
MRNA splice site selection GO:0006376
Selection of a splice site by components of the assembling spliceosome.
57 Q07955 (/TAS) Q07955 (/TAS) Q07955 (/TAS) Q07955 (/TAS) Q07955 (/TAS) Q07955 (/TAS) Q07955 (/TAS) Q07955 (/TAS) Q07955 (/TAS) Q07955 (/TAS)
(47 more)
MRNA processing GO:0006397
Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide.
57 Q07955 (/TAS) Q07955 (/TAS) Q07955 (/TAS) Q07955 (/TAS) Q07955 (/TAS) Q07955 (/TAS) Q07955 (/TAS) Q07955 (/TAS) Q07955 (/TAS) Q07955 (/TAS)
(47 more)
RNA export from nucleus GO:0006405
The directed movement of RNA from the nucleus to the cytoplasm.
57 Q07955 (/TAS) Q07955 (/TAS) Q07955 (/TAS) Q07955 (/TAS) Q07955 (/TAS) Q07955 (/TAS) Q07955 (/TAS) Q07955 (/TAS) Q07955 (/TAS) Q07955 (/TAS)
(47 more)
MRNA export from nucleus GO:0006406
The directed movement of mRNA from the nucleus to the cytoplasm.
57 Q07955 (/TAS) Q07955 (/TAS) Q07955 (/TAS) Q07955 (/TAS) Q07955 (/TAS) Q07955 (/TAS) Q07955 (/TAS) Q07955 (/TAS) Q07955 (/TAS) Q07955 (/TAS)
(47 more)
MRNA 3'-end processing GO:0031124
Any process involved in forming the mature 3' end of an mRNA molecule.
57 Q07955 (/TAS) Q07955 (/TAS) Q07955 (/TAS) Q07955 (/TAS) Q07955 (/TAS) Q07955 (/TAS) Q07955 (/TAS) Q07955 (/TAS) Q07955 (/TAS) Q07955 (/TAS)
(47 more)
MRNA splicing, via spliceosome GO:0000398
The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.
49 Q07955 (/IC) Q07955 (/IC) Q07955 (/IC) Q07955 (/IC) Q07955 (/IC) Q07955 (/IC) Q07955 (/IC) Q07955 (/IC) Q07955 (/IC) Q07955 (/IC)
(39 more)
Alternative mRNA splicing, via spliceosome GO:0000380
The process of generating multiple mRNA molecules from a given set of exons by differential use of exons from the primary transcript(s) to form multiple mature mRNAs that vary in their exon composition.
46 Q07955 (/IDA) Q07955 (/IDA) Q07955 (/IDA) Q07955 (/IDA) Q07955 (/IDA) Q07955 (/IDA) Q07955 (/IDA) Q07955 (/IDA) Q07955 (/IDA) Q07955 (/IDA)
(36 more)
Alternative mRNA splicing, via spliceosome GO:0000380
The process of generating multiple mRNA molecules from a given set of exons by differential use of exons from the primary transcript(s) to form multiple mature mRNAs that vary in their exon composition.
46 D4A9L2 (/IMP) D4A9L2 (/IMP) D4A9L2 (/IMP) D4A9L2 (/IMP) D4A9L2 (/IMP) D4A9L2 (/IMP) D4A9L2 (/IMP) D4A9L2 (/IMP) D4A9L2 (/IMP) D4A9L2 (/IMP)
(36 more)
Showing 1 to 10 of 35 entries

There are 17 GO terms relating to "cellular component"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO TermAnnotationsEvidence
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
141 D4A9L2 (/IDA) D4A9L2 (/IDA) D4A9L2 (/IDA) D4A9L2 (/IDA) D4A9L2 (/IDA) D4A9L2 (/IDA) D4A9L2 (/IDA) D4A9L2 (/IDA) D4A9L2 (/IDA) D4A9L2 (/IDA)
(131 more)
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
139 Q0VCY7 (/ISS) Q0VCY7 (/ISS) Q0VCY7 (/ISS) Q0VCY7 (/ISS) Q0VCY7 (/ISS) Q0VCY7 (/ISS) Q0VCY7 (/ISS) Q0VCY7 (/ISS) Q0VCY7 (/ISS) Q0VCY7 (/ISS)
(129 more)
Nuclear speck GO:0016607
A discrete extra-nucleolar subnuclear domain, 20-50 in number, in which splicing factors are seen to be localized by immunofluorescence microscopy.
92 Q07955 (/IDA) Q07955 (/IDA) Q07955 (/IDA) Q07955 (/IDA) Q07955 (/IDA) Q07955 (/IDA) Q07955 (/IDA) Q07955 (/IDA) Q07955 (/IDA) Q07955 (/IDA)
(82 more)
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
57 Q07955 (/IDA) Q07955 (/IDA) Q07955 (/IDA) Q07955 (/IDA) Q07955 (/IDA) Q07955 (/IDA) Q07955 (/IDA) Q07955 (/IDA) Q07955 (/IDA) Q07955 (/IDA)
(47 more)
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
57 Q07955 (/TAS) Q07955 (/TAS) Q07955 (/TAS) Q07955 (/TAS) Q07955 (/TAS) Q07955 (/TAS) Q07955 (/TAS) Q07955 (/TAS) Q07955 (/TAS) Q07955 (/TAS)
(47 more)
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
47 Q6PDM2 (/ISO) Q6PDM2 (/ISO) Q6PDM2 (/ISO) Q6PDM2 (/ISO) Q6PDM2 (/ISO) Q6PDM2 (/ISO) Q6PDM2 (/ISO) Q6PDM2 (/ISO) Q6PDM2 (/ISO) Q6PDM2 (/ISO)
(37 more)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
46 Q07955 (/HDA) Q07955 (/HDA) Q07955 (/HDA) Q07955 (/HDA) Q07955 (/HDA) Q07955 (/HDA) Q07955 (/HDA) Q07955 (/HDA) Q07955 (/HDA) Q07955 (/HDA)
(36 more)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
46 Q6PDM2 (/ISO) Q6PDM2 (/ISO) Q6PDM2 (/ISO) Q6PDM2 (/ISO) Q6PDM2 (/ISO) Q6PDM2 (/ISO) Q6PDM2 (/ISO) Q6PDM2 (/ISO) Q6PDM2 (/ISO) Q6PDM2 (/ISO)
(36 more)
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
46 D4A9L2 (/IDA) D4A9L2 (/IDA) D4A9L2 (/IDA) D4A9L2 (/IDA) D4A9L2 (/IDA) D4A9L2 (/IDA) D4A9L2 (/IDA) D4A9L2 (/IDA) D4A9L2 (/IDA) D4A9L2 (/IDA)
(36 more)
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
46 Q6PDM2 (/ISO) Q6PDM2 (/ISO) Q6PDM2 (/ISO) Q6PDM2 (/ISO) Q6PDM2 (/ISO) Q6PDM2 (/ISO) Q6PDM2 (/ISO) Q6PDM2 (/ISO) Q6PDM2 (/ISO) Q6PDM2 (/ISO)
(36 more)
Showing 1 to 10 of 17 entries
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