The name of this superfamily has been modified since the most recent official CATH+ release (v4_4_0). At the point of the last release, this superfamily was: waiting to be named.
FunFam 48: Heterogeneous nuclear ribonucleoprotein a1 isoform
Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.
There are 21 GO terms relating to "molecular function"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
MiRNA binding GO:0035198
Interacting selectively and non-covalently with a microRNA, a 21-23 nucleotide RNA that is processed from a stem-loop RNA precursor (pre-miRNA) that is encoded within plant and animal genomes.
|
68 |
P04256 (/ISS)
P09867 (/ISS)
P09867 (/ISS)
P09867 (/ISS)
P09867 (/ISS)
P09867 (/ISS)
P09867 (/ISS)
P09867 (/ISS)
P09867 (/ISS)
P09867 (/ISS)
(58 more) |
Single-stranded DNA binding GO:0003697
Interacting selectively and non-covalently with single-stranded DNA.
|
34 |
P04256 (/ISS)
P49312 (/ISS)
P49312 (/ISS)
P49312 (/ISS)
P49312 (/ISS)
P49312 (/ISS)
P49312 (/ISS)
P49312 (/ISS)
P49312 (/ISS)
P49312 (/ISS)
(24 more) |
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
|
16 |
P04256 (/IPI)
P09651 (/IPI)
P09651 (/IPI)
P09651 (/IPI)
P09651 (/IPI)
P09651 (/IPI)
P09651 (/IPI)
P09651 (/IPI)
P09651 (/IPI)
P09651 (/IPI)
(6 more) |
Single-stranded DNA binding GO:0003697
Interacting selectively and non-covalently with single-stranded DNA.
|
14 |
P09651 (/IDA)
P09651 (/IDA)
P09651 (/IDA)
P09651 (/IDA)
P09651 (/IDA)
P09651 (/IDA)
P09651 (/IDA)
P09651 (/IDA)
P09651 (/IDA)
P09651 (/IDA)
(4 more) |
RNA binding GO:0003723
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
|
14 |
P09651 (/HDA)
P09651 (/HDA)
P09651 (/HDA)
P09651 (/HDA)
P09651 (/HDA)
P09651 (/HDA)
P09651 (/HDA)
P09651 (/HDA)
P09651 (/HDA)
P09651 (/HDA)
(4 more) |
Single-stranded RNA binding GO:0003727
Interacting selectively and non-covalently with single-stranded RNA.
|
14 |
P09651 (/IC)
P09651 (/IC)
P09651 (/IC)
P09651 (/IC)
P09651 (/IC)
P09651 (/IC)
P09651 (/IC)
P09651 (/IC)
P09651 (/IC)
P09651 (/IC)
(4 more) |
Protein domain specific binding GO:0019904
Interacting selectively and non-covalently with a specific domain of a protein.
|
14 |
P09651 (/IPI)
P09651 (/IPI)
P09651 (/IPI)
P09651 (/IPI)
P09651 (/IPI)
P09651 (/IPI)
P09651 (/IPI)
P09651 (/IPI)
P09651 (/IPI)
P09651 (/IPI)
(4 more) |
MiRNA binding GO:0035198
Interacting selectively and non-covalently with a microRNA, a 21-23 nucleotide RNA that is processed from a stem-loop RNA precursor (pre-miRNA) that is encoded within plant and animal genomes.
|
14 |
P09651 (/IDA)
P09651 (/IDA)
P09651 (/IDA)
P09651 (/IDA)
P09651 (/IDA)
P09651 (/IDA)
P09651 (/IDA)
P09651 (/IDA)
P09651 (/IDA)
P09651 (/IDA)
(4 more) |
Pre-mRNA binding GO:0036002
Interacting selectively and non-covalently with pre-messenger RNA (pre-mRNA), an intermediate molecule between DNA and protein that may contain introns and, at least in part, encodes one or more proteins. Introns are removed from pre-mRNA to form a mRNA molecule.
|
14 |
P09651 (/IDA)
P09651 (/IDA)
P09651 (/IDA)
P09651 (/IDA)
P09651 (/IDA)
P09651 (/IDA)
P09651 (/IDA)
P09651 (/IDA)
P09651 (/IDA)
P09651 (/IDA)
(4 more) |
Telomeric repeat-containing RNA binding GO:0061752
Interacting selectively and non-covalently with long non-coding RNA molecules transcribed from subtelomeric regions in most eukaryotes. Telomeric repeat-containing RNA (TERRA) molecules consist of subtelomeric-derived sequences and G-rich telomeric repeats.
|
14 |
P09651 (/IDA)
P09651 (/IDA)
P09651 (/IDA)
P09651 (/IDA)
P09651 (/IDA)
P09651 (/IDA)
P09651 (/IDA)
P09651 (/IDA)
P09651 (/IDA)
P09651 (/IDA)
(4 more) |
Showing 1 to 10 of 21 entries
There are 26 GO terms relating to "biological process"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Cellular response to sodium arsenite GO:1903936
Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a sodium arsenite stimulus.
|
101 |
A5A6H4 (/ISS)
A5A6H4 (/ISS)
A5A6H4 (/ISS)
A5A6H4 (/ISS)
A5A6H4 (/ISS)
A5A6H4 (/ISS)
A5A6H4 (/ISS)
A5A6H4 (/ISS)
A5A6H4 (/ISS)
A5A6H4 (/ISS)
(91 more) |
Nuclear export GO:0051168
The directed movement of substances out of the nucleus.
|
34 |
P04256 (/ISS)
P49312 (/ISS)
P49312 (/ISS)
P49312 (/ISS)
P49312 (/ISS)
P49312 (/ISS)
P49312 (/ISS)
P49312 (/ISS)
P49312 (/ISS)
P49312 (/ISS)
(24 more) |
Import into nucleus GO:0051170
The directed movement of substances into the nucleus.
|
34 |
P04256 (/ISS)
P49312 (/ISS)
P49312 (/ISS)
P49312 (/ISS)
P49312 (/ISS)
P49312 (/ISS)
P49312 (/ISS)
P49312 (/ISS)
P49312 (/ISS)
P49312 (/ISS)
(24 more) |
Alternative mRNA splicing, via spliceosome GO:0000380
The process of generating multiple mRNA molecules from a given set of exons by differential use of exons from the primary transcript(s) to form multiple mature mRNAs that vary in their exon composition.
|
33 |
P49312 (/IDA)
P49312 (/IDA)
P49312 (/IDA)
P49312 (/IDA)
P49312 (/IDA)
P49312 (/IDA)
P49312 (/IDA)
P49312 (/IDA)
P49312 (/IDA)
P49312 (/IDA)
(23 more) |
RNA splicing GO:0008380
The process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA.
|
33 |
P49312 (/IDA)
P49312 (/IDA)
P49312 (/IDA)
P49312 (/IDA)
P49312 (/IDA)
P49312 (/IDA)
P49312 (/IDA)
P49312 (/IDA)
P49312 (/IDA)
P49312 (/IDA)
(23 more) |
RNA metabolic process GO:0016070
The cellular chemical reactions and pathways involving RNA, ribonucleic acid, one of the two main type of nucleic acid, consisting of a long, unbranched macromolecule formed from ribonucleotides joined in 3',5'-phosphodiester linkage.
|
15 |
P04256 (/TAS)
P09651 (/TAS)
P09651 (/TAS)
P09651 (/TAS)
P09651 (/TAS)
P09651 (/TAS)
P09651 (/TAS)
P09651 (/TAS)
P09651 (/TAS)
P09651 (/TAS)
(5 more) |
Regulation of alternative mRNA splicing, via spliceosome GO:0000381
Any process that modulates the frequency, rate or extent of alternative splicing of nuclear mRNAs.
|
14 |
P09651 (/IMP)
P09651 (/IMP)
P09651 (/IMP)
P09651 (/IMP)
P09651 (/IMP)
P09651 (/IMP)
P09651 (/IMP)
P09651 (/IMP)
P09651 (/IMP)
P09651 (/IMP)
(4 more) |
MRNA splicing, via spliceosome GO:0000398
The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.
|
14 |
P09651 (/IC)
P09651 (/IC)
P09651 (/IC)
P09651 (/IC)
P09651 (/IC)
P09651 (/IC)
P09651 (/IC)
P09651 (/IC)
P09651 (/IC)
P09651 (/IC)
(4 more) |
MRNA splicing, via spliceosome GO:0000398
The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.
|
14 |
P09651 (/TAS)
P09651 (/TAS)
P09651 (/TAS)
P09651 (/TAS)
P09651 (/TAS)
P09651 (/TAS)
P09651 (/TAS)
P09651 (/TAS)
P09651 (/TAS)
P09651 (/TAS)
(4 more) |
RNA export from nucleus GO:0006405
The directed movement of RNA from the nucleus to the cytoplasm.
|
14 |
P09651 (/IC)
P09651 (/IC)
P09651 (/IC)
P09651 (/IC)
P09651 (/IC)
P09651 (/IC)
P09651 (/IC)
P09651 (/IC)
P09651 (/IC)
P09651 (/IC)
(4 more) |
Showing 1 to 10 of 26 entries
There are 18 GO terms relating to "cellular component"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Ribonucleoprotein complex GO:1990904
A macromolecular complex containing both protein and RNA molecules.
|
101 |
A5A6H4 (/ISS)
A5A6H4 (/ISS)
A5A6H4 (/ISS)
A5A6H4 (/ISS)
A5A6H4 (/ISS)
A5A6H4 (/ISS)
A5A6H4 (/ISS)
A5A6H4 (/ISS)
A5A6H4 (/ISS)
A5A6H4 (/ISS)
(91 more) |
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
67 |
A5A6H4 (/ISS)
A5A6H4 (/ISS)
A5A6H4 (/ISS)
A5A6H4 (/ISS)
A5A6H4 (/ISS)
A5A6H4 (/ISS)
A5A6H4 (/ISS)
A5A6H4 (/ISS)
A5A6H4 (/ISS)
A5A6H4 (/ISS)
(57 more) |
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
|
65 |
A0A024RAZ7 (/IDA)
A0A024RAZ7 (/IDA)
A0A024RAZ7 (/IDA)
A0A024RAZ7 (/IDA)
A0A024RAZ7 (/IDA)
A0A024RAZ7 (/IDA)
A0A024RAZ7 (/IDA)
A0A024RAZ7 (/IDA)
A0A024RAZ7 (/IDA)
A0A024RAZ7 (/IDA)
(55 more) |
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
48 |
P04256 (/IDA)
P09651 (/IDA)
P09651 (/IDA)
P09651 (/IDA)
P09651 (/IDA)
P09651 (/IDA)
P09651 (/IDA)
P09651 (/IDA)
P09651 (/IDA)
P09651 (/IDA)
(38 more) |
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
|
34 |
P04256 (/ISS)
P49312 (/ISS)
P49312 (/ISS)
P49312 (/ISS)
P49312 (/ISS)
P49312 (/ISS)
P49312 (/ISS)
P49312 (/ISS)
P49312 (/ISS)
P49312 (/ISS)
(24 more) |
Spliceosomal complex GO:0005681
Any of a series of ribonucleoprotein complexes that contain snRNA(s) and small nuclear ribonucleoproteins (snRNPs), and are formed sequentially during the spliceosomal splicing of one or more substrate RNAs, and which also contain the RNA substrate(s) from the initial target RNAs of splicing, the splicing intermediate RNA(s), to the final RNA products. During cis-splicing, the initial target RNA is a single, contiguous RNA transcript, whether mRNA, snoRNA, etc., and the released products are a spliced RNA and an excised intron, generally as a lariat structure. During trans-splicing, there are two initial substrate RNAs, the spliced leader RNA and a pre-mRNA.
|
34 |
P04256 (/ISS)
P49312 (/ISS)
P49312 (/ISS)
P49312 (/ISS)
P49312 (/ISS)
P49312 (/ISS)
P49312 (/ISS)
P49312 (/ISS)
P49312 (/ISS)
P49312 (/ISS)
(24 more) |
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
|
34 |
P04256 (/ISS)
P49312 (/ISS)
P49312 (/ISS)
P49312 (/ISS)
P49312 (/ISS)
P49312 (/ISS)
P49312 (/ISS)
P49312 (/ISS)
P49312 (/ISS)
P49312 (/ISS)
(24 more) |
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
|
33 |
P49312 (/ISO)
P49312 (/ISO)
P49312 (/ISO)
P49312 (/ISO)
P49312 (/ISO)
P49312 (/ISO)
P49312 (/ISO)
P49312 (/ISO)
P49312 (/ISO)
P49312 (/ISO)
(23 more) |
Ribonucleoprotein complex GO:1990904
A macromolecular complex containing both protein and RNA molecules.
|
33 |
P49312 (/ISO)
P49312 (/ISO)
P49312 (/ISO)
P49312 (/ISO)
P49312 (/ISO)
P49312 (/ISO)
P49312 (/ISO)
P49312 (/ISO)
P49312 (/ISO)
P49312 (/ISO)
(23 more) |
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
|
14 |
P09651 (/TAS)
P09651 (/TAS)
P09651 (/TAS)
P09651 (/TAS)
P09651 (/TAS)
P09651 (/TAS)
P09651 (/TAS)
P09651 (/TAS)
P09651 (/TAS)
P09651 (/TAS)
(4 more) |
Showing 1 to 10 of 18 entries