The name of this superfamily has been modified since the most recent official CATH+ release (v4_4_0). At the point of the last release, this superfamily was: waiting to be named.
FunFam 35: 60S ribosomal protein L23a
Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.
There are 10 GO terms relating to "molecular function"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
|
8 | P04456 (/IPI) P04456 (/IPI) P04456 (/IPI) P04456 (/IPI) P04456 (/IPI) P04456 (/IPI) P04456 (/IPI) Q10330 (/IPI) |
RNA binding GO:0003723
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
|
7 | P04456 (/IDA) P04456 (/IDA) P04456 (/IDA) P04456 (/IDA) P04456 (/IDA) P04456 (/IDA) P04456 (/IDA) |
Structural constituent of ribosome GO:0003735
The action of a molecule that contributes to the structural integrity of the ribosome.
|
7 | P04456 (/IC) P04456 (/IC) P04456 (/IC) P04456 (/IC) P04456 (/IC) P04456 (/IC) P04456 (/IC) |
RNA binding GO:0003723
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
|
6 | Q57ZH1 (/ISM) Q57ZH2 (/ISM) Q57ZH2 (/ISM) Q57ZH2 (/ISM) Q57ZH2 (/ISM) Q57ZH2 (/ISM) |
Structural constituent of ribosome GO:0003735
The action of a molecule that contributes to the structural integrity of the ribosome.
|
6 | Q57ZH1 (/ISM) Q57ZH2 (/ISM) Q57ZH2 (/ISM) Q57ZH2 (/ISM) Q57ZH2 (/ISM) Q57ZH2 (/ISM) |
Structural constituent of ribosome GO:0003735
The action of a molecule that contributes to the structural integrity of the ribosome.
|
3 | O97118 (/HDA) Q0ZHI2 (/HDA) Q9W0A8 (/HDA) |
Structural constituent of ribosome GO:0003735
The action of a molecule that contributes to the structural integrity of the ribosome.
|
3 | Q8LD46 (/IDA) Q8LD46 (/IDA) Q9M3C3 (/IDA) |
Structural constituent of ribosome GO:0003735
The action of a molecule that contributes to the structural integrity of the ribosome.
|
3 | O97118 (/TAS) Q0ZHI2 (/TAS) Q9W0A8 (/TAS) |
Structural constituent of ribosome GO:0003735
The action of a molecule that contributes to the structural integrity of the ribosome.
|
2 | O74391 (/ISO) Q10330 (/ISO) |
RRNA binding GO:0019843
Interacting selectively and non-covalently with ribosomal RNA.
|
1 | Q10330 (/ISO) |
There are 10 GO terms relating to "biological process"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Cytoplasmic translation GO:0002181
The chemical reactions and pathways resulting in the formation of a protein in the cytoplasm. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein.
|
10 | O97118 (/IC) P04456 (/IC) P04456 (/IC) P04456 (/IC) P04456 (/IC) P04456 (/IC) P04456 (/IC) P04456 (/IC) Q0ZHI2 (/IC) Q9W0A8 (/IC) |
Ribosomal large subunit assembly GO:0000027
The aggregation, arrangement and bonding together of constituent RNAs and proteins to form the large ribosomal subunit.
|
7 | P04456 (/IMP) P04456 (/IMP) P04456 (/IMP) P04456 (/IMP) P04456 (/IMP) P04456 (/IMP) P04456 (/IMP) |
Translation GO:0006412
The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
|
6 | Q57ZH1 (/ISM) Q57ZH2 (/ISM) Q57ZH2 (/ISM) Q57ZH2 (/ISM) Q57ZH2 (/ISM) Q57ZH2 (/ISM) |
Ribosome biogenesis GO:0042254
A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of ribosome subunits; includes transport to the sites of protein synthesis.
|
6 | Q57ZH1 (/ISM) Q57ZH2 (/ISM) Q57ZH2 (/ISM) Q57ZH2 (/ISM) Q57ZH2 (/ISM) Q57ZH2 (/ISM) |
Cytoplasmic translation GO:0002181
The chemical reactions and pathways resulting in the formation of a protein in the cytoplasm. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein.
|
3 | O97118 (/TAS) Q0ZHI2 (/TAS) Q9W0A8 (/TAS) |
Response to oxidative stress GO:0006979
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals.
|
3 | Q8LD46 (/IEP) Q8LD46 (/IEP) Q9M3C3 (/IEP) |
Response to cold GO:0009409
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism.
|
3 | Q8LD46 (/IEP) Q8LD46 (/IEP) Q9M3C3 (/IEP) |
Response to high light intensity GO:0009644
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a high light intensity stimulus.
|
3 | Q8LD46 (/IEP) Q8LD46 (/IEP) Q9M3C3 (/IEP) |
Ribosomal large subunit assembly GO:0000027
The aggregation, arrangement and bonding together of constituent RNAs and proteins to form the large ribosomal subunit.
|
2 | O74391 (/ISO) Q10330 (/ISO) |
Cytoplasmic translation GO:0002181
The chemical reactions and pathways resulting in the formation of a protein in the cytoplasm. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein.
|
2 | O74391 (/ISO) Q10330 (/ISO) |
There are 18 GO terms relating to "cellular component"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Cytosolic large ribosomal subunit GO:0022625
The large subunit of a ribosome located in the cytosol.
|
10 | P04456 (/IDA) P04456 (/IDA) P04456 (/IDA) P04456 (/IDA) P04456 (/IDA) P04456 (/IDA) P04456 (/IDA) Q8LD46 (/IDA) Q8LD46 (/IDA) Q9M3C3 (/IDA) |
Nucleolus GO:0005730
A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.
|
8 | Q57ZH1 (/IDA) Q57ZH2 (/IDA) Q57ZH2 (/IDA) Q57ZH2 (/IDA) Q57ZH2 (/IDA) Q57ZH2 (/IDA) Q8LD46 (/IDA) Q8LD46 (/IDA) |
Preribosome, large subunit precursor GO:0030687
A preribosomal complex consisting of 27SA, 27SB, and/or 7S pre-rRNA, 5S rRNA, ribosomal proteins including late-associating large subunit proteins, and associated proteins; a precursor of the eukaryotic cytoplasmic large ribosomal subunit.
|
7 | P04456 (/IDA) P04456 (/IDA) P04456 (/IDA) P04456 (/IDA) P04456 (/IDA) P04456 (/IDA) P04456 (/IDA) |
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
|
6 | Q57ZH1 (/IDA) Q57ZH2 (/IDA) Q57ZH2 (/IDA) Q57ZH2 (/IDA) Q57ZH2 (/IDA) Q57ZH2 (/IDA) |
Ribosome GO:0005840
An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.
|
5 | Q57ZH2 (/ISM) Q57ZH2 (/ISM) Q57ZH2 (/ISM) Q57ZH2 (/ISM) Q57ZH2 (/ISM) |
Cytosolic large ribosomal subunit GO:0022625
The large subunit of a ribosome located in the cytosol.
|
3 | O97118 (/TAS) Q0ZHI2 (/TAS) Q9W0A8 (/TAS) |
Cytosolic ribosome GO:0022626
A ribosome located in the cytosol.
|
3 | O97118 (/HDA) Q0ZHI2 (/HDA) Q9W0A8 (/HDA) |
Cytosolic ribosome GO:0022626
A ribosome located in the cytosol.
|
3 | Q8LD46 (/IDA) Q8LD46 (/IDA) Q9M3C3 (/IDA) |
Cell wall GO:0005618
The rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal, most prokaryotic cells and some protozoan parasites, maintaining their shape and protecting them from osmotic lysis. In plants it is made of cellulose and, often, lignin; in fungi it is composed largely of polysaccharides; in bacteria it is composed of peptidoglycan; in protozoan parasites such as Giardia species, it's made of carbohydrates and proteins.
|
2 | Q8LD46 (/IDA) Q8LD46 (/IDA) |
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
|
2 | Q8LD46 (/IDA) Q8LD46 (/IDA) |
Plasmodesma GO:0009506
A fine cytoplasmic channel, found in all higher plants, that connects the cytoplasm of one cell to that of an adjacent cell.
|
2 | Q8LD46 (/IDA) Q8LD46 (/IDA) |
Cytosolic large ribosomal subunit GO:0022625
The large subunit of a ribosome located in the cytosol.
|
2 | O74391 (/ISO) Q10330 (/ISO) |
Nucleolus GO:0005730
A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.
|
1 | Q4QJ20 (/ISO) |
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
|
1 | O74391 (/HDA) |
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
|
1 | Q4QJ20 (/ISO) |
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
|
1 | Q10330 (/HDA) |
Membrane GO:0016020
A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
|
1 | Q9M3C3 (/IDA) |
Polysomal ribosome GO:0042788
A ribosome bound to mRNA that forms part of a polysome.
|
1 | Q9M3C3 (/IDA) |