The name of this superfamily has been modified since the most recent official CATH+ release (v4_4_0). At the point of the last release, this superfamily was: waiting to be named.

Functional Families

Overview of the Structural Clusters (SC) and Functional Families within this CATH Superfamily. Clusters with a representative structure are represented by a filled circle.
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FunFam 308: Serine/arginine-rich splicing factor 2

Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.

There are 6 GO terms relating to "molecular function"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
82 Q01130 (/IPI) Q01130 (/IPI) Q01130 (/IPI) Q01130 (/IPI) Q01130 (/IPI) Q01130 (/IPI) Q01130 (/IPI) Q01130 (/IPI) Q01130 (/IPI) Q01130 (/IPI)
(72 more)
Transcription corepressor activity GO:0003714
A protein or a member of a complex that interacts specifically and non-covalently with a DNA-bound DNA-binding transcription factor to repress the transcription of specific genes. Corepressors often act by altering chromatin structure and modifications. For example, one class of transcription coregulators modifies chromatin structure through covalent modification of histones. A second ATP-dependent class modifies the conformation of chromatin. A third class occludes DNA-binding transcription factor protein-protein interaction domains. A fourth class of corepressors prevents interactions of DNA bound DNA-binding transcription factor with coactivators.
41 Q01130 (/NAS) Q01130 (/NAS) Q01130 (/NAS) Q01130 (/NAS) Q01130 (/NAS) Q01130 (/NAS) Q01130 (/NAS) Q01130 (/NAS) Q01130 (/NAS) Q01130 (/NAS)
(31 more)
RNA binding GO:0003723
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
41 Q01130 (/HDA) Q01130 (/HDA) Q01130 (/HDA) Q01130 (/HDA) Q01130 (/HDA) Q01130 (/HDA) Q01130 (/HDA) Q01130 (/HDA) Q01130 (/HDA) Q01130 (/HDA)
(31 more)
Protein kinase C binding GO:0005080
Interacting selectively and non-covalently with protein kinase C.
41 Q6PDU1 (/IPI) Q6PDU1 (/IPI) Q6PDU1 (/IPI) Q6PDU1 (/IPI) Q6PDU1 (/IPI) Q6PDU1 (/IPI) Q6PDU1 (/IPI) Q6PDU1 (/IPI) Q6PDU1 (/IPI) Q6PDU1 (/IPI)
(31 more)
Protein kinase C binding GO:0005080
Interacting selectively and non-covalently with protein kinase C.
41 Q62093 (/ISO) Q62093 (/ISO) Q62093 (/ISO) Q62093 (/ISO) Q62093 (/ISO) Q62093 (/ISO) Q62093 (/ISO) Q62093 (/ISO) Q62093 (/ISO) Q62093 (/ISO)
(31 more)
Pre-mRNA binding GO:0036002
Interacting selectively and non-covalently with pre-messenger RNA (pre-mRNA), an intermediate molecule between DNA and protein that may contain introns and, at least in part, encodes one or more proteins. Introns are removed from pre-mRNA to form a mRNA molecule.
41 Q62093 (/IDA) Q62093 (/IDA) Q62093 (/IDA) Q62093 (/IDA) Q62093 (/IDA) Q62093 (/IDA) Q62093 (/IDA) Q62093 (/IDA) Q62093 (/IDA) Q62093 (/IDA)
(31 more)

There are 9 GO terms relating to "biological process"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Mitotic cell cycle GO:0000278
Progression through the phases of the mitotic cell cycle, the most common eukaryotic cell cycle, which canonically comprises four successive phases called G1, S, G2, and M and includes replication of the genome and the subsequent segregation of chromosomes into daughter cells. In some variant cell cycles nuclear replication or nuclear division may not be followed by cell division, or G1 and G2 phases may be absent.
41 Q6PDU1 (/IEP) Q6PDU1 (/IEP) Q6PDU1 (/IEP) Q6PDU1 (/IEP) Q6PDU1 (/IEP) Q6PDU1 (/IEP) Q6PDU1 (/IEP) Q6PDU1 (/IEP) Q6PDU1 (/IEP) Q6PDU1 (/IEP)
(31 more)
Regulation of alternative mRNA splicing, via spliceosome GO:0000381
Any process that modulates the frequency, rate or extent of alternative splicing of nuclear mRNAs.
41 Q62093 (/IDA) Q62093 (/IDA) Q62093 (/IDA) Q62093 (/IDA) Q62093 (/IDA) Q62093 (/IDA) Q62093 (/IDA) Q62093 (/IDA) Q62093 (/IDA) Q62093 (/IDA)
(31 more)
MRNA splicing, via spliceosome GO:0000398
The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.
41 Q01130 (/TAS) Q01130 (/TAS) Q01130 (/TAS) Q01130 (/TAS) Q01130 (/TAS) Q01130 (/TAS) Q01130 (/TAS) Q01130 (/TAS) Q01130 (/TAS) Q01130 (/TAS)
(31 more)
MRNA processing GO:0006397
Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide.
41 Q01130 (/TAS) Q01130 (/TAS) Q01130 (/TAS) Q01130 (/TAS) Q01130 (/TAS) Q01130 (/TAS) Q01130 (/TAS) Q01130 (/TAS) Q01130 (/TAS) Q01130 (/TAS)
(31 more)
RNA export from nucleus GO:0006405
The directed movement of RNA from the nucleus to the cytoplasm.
41 Q01130 (/TAS) Q01130 (/TAS) Q01130 (/TAS) Q01130 (/TAS) Q01130 (/TAS) Q01130 (/TAS) Q01130 (/TAS) Q01130 (/TAS) Q01130 (/TAS) Q01130 (/TAS)
(31 more)
MRNA export from nucleus GO:0006406
The directed movement of mRNA from the nucleus to the cytoplasm.
41 Q01130 (/TAS) Q01130 (/TAS) Q01130 (/TAS) Q01130 (/TAS) Q01130 (/TAS) Q01130 (/TAS) Q01130 (/TAS) Q01130 (/TAS) Q01130 (/TAS) Q01130 (/TAS)
(31 more)
RNA splicing GO:0008380
The process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA.
41 Q01130 (/TAS) Q01130 (/TAS) Q01130 (/TAS) Q01130 (/TAS) Q01130 (/TAS) Q01130 (/TAS) Q01130 (/TAS) Q01130 (/TAS) Q01130 (/TAS) Q01130 (/TAS)
(31 more)
MRNA 3'-end processing GO:0031124
Any process involved in forming the mature 3' end of an mRNA molecule.
41 Q01130 (/TAS) Q01130 (/TAS) Q01130 (/TAS) Q01130 (/TAS) Q01130 (/TAS) Q01130 (/TAS) Q01130 (/TAS) Q01130 (/TAS) Q01130 (/TAS) Q01130 (/TAS)
(31 more)
Response to vitamin E GO:0033197
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a vitamin E stimulus.
41 Q6PDU1 (/IEP) Q6PDU1 (/IEP) Q6PDU1 (/IEP) Q6PDU1 (/IEP) Q6PDU1 (/IEP) Q6PDU1 (/IEP) Q6PDU1 (/IEP) Q6PDU1 (/IEP) Q6PDU1 (/IEP) Q6PDU1 (/IEP)
(31 more)

There are 11 GO terms relating to "cellular component"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Nuclear speck GO:0016607
A discrete extra-nucleolar subnuclear domain, 20-50 in number, in which splicing factors are seen to be localized by immunofluorescence microscopy.
164 A0A024R8U5 (/IDA) A0A024R8U5 (/IDA) A0A024R8U5 (/IDA) A0A024R8U5 (/IDA) A0A024R8U5 (/IDA) A0A024R8U5 (/IDA) A0A024R8U5 (/IDA) A0A024R8U5 (/IDA) A0A024R8U5 (/IDA) A0A024R8U5 (/IDA)
(154 more)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
123 A0A024R8U5 (/IDA) A0A024R8U5 (/IDA) A0A024R8U5 (/IDA) A0A024R8U5 (/IDA) A0A024R8U5 (/IDA) A0A024R8U5 (/IDA) A0A024R8U5 (/IDA) A0A024R8U5 (/IDA) A0A024R8U5 (/IDA) A0A024R8U5 (/IDA)
(113 more)
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
82 A0A024R8U5 (/IDA) A0A024R8U5 (/IDA) A0A024R8U5 (/IDA) A0A024R8U5 (/IDA) A0A024R8U5 (/IDA) A0A024R8U5 (/IDA) A0A024R8U5 (/IDA) A0A024R8U5 (/IDA) A0A024R8U5 (/IDA) A0A024R8U5 (/IDA)
(72 more)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
41 Q62093 (/ISO) Q62093 (/ISO) Q62093 (/ISO) Q62093 (/ISO) Q62093 (/ISO) Q62093 (/ISO) Q62093 (/ISO) Q62093 (/ISO) Q62093 (/ISO) Q62093 (/ISO)
(31 more)
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
41 Q01130 (/TAS) Q01130 (/TAS) Q01130 (/TAS) Q01130 (/TAS) Q01130 (/TAS) Q01130 (/TAS) Q01130 (/TAS) Q01130 (/TAS) Q01130 (/TAS) Q01130 (/TAS)
(31 more)
Spliceosomal complex GO:0005681
Any of a series of ribonucleoprotein complexes that contain snRNA(s) and small nuclear ribonucleoproteins (snRNPs), and are formed sequentially during the spliceosomal splicing of one or more substrate RNAs, and which also contain the RNA substrate(s) from the initial target RNAs of splicing, the splicing intermediate RNA(s), to the final RNA products. During cis-splicing, the initial target RNA is a single, contiguous RNA transcript, whether mRNA, snoRNA, etc., and the released products are a spliced RNA and an excised intron, generally as a lariat structure. During trans-splicing, there are two initial substrate RNAs, the spliced leader RNA and a pre-mRNA.
41 Q62093 (/IDA) Q62093 (/IDA) Q62093 (/IDA) Q62093 (/IDA) Q62093 (/IDA) Q62093 (/IDA) Q62093 (/IDA) Q62093 (/IDA) Q62093 (/IDA) Q62093 (/IDA)
(31 more)
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
41 Q62093 (/ISO) Q62093 (/ISO) Q62093 (/ISO) Q62093 (/ISO) Q62093 (/ISO) Q62093 (/ISO) Q62093 (/ISO) Q62093 (/ISO) Q62093 (/ISO) Q62093 (/ISO)
(31 more)
Nuclear speck GO:0016607
A discrete extra-nucleolar subnuclear domain, 20-50 in number, in which splicing factors are seen to be localized by immunofluorescence microscopy.
41 Q62093 (/ISO) Q62093 (/ISO) Q62093 (/ISO) Q62093 (/ISO) Q62093 (/ISO) Q62093 (/ISO) Q62093 (/ISO) Q62093 (/ISO) Q62093 (/ISO) Q62093 (/ISO)
(31 more)
Nuclear speck GO:0016607
A discrete extra-nucleolar subnuclear domain, 20-50 in number, in which splicing factors are seen to be localized by immunofluorescence microscopy.
41 Q01130 (/TAS) Q01130 (/TAS) Q01130 (/TAS) Q01130 (/TAS) Q01130 (/TAS) Q01130 (/TAS) Q01130 (/TAS) Q01130 (/TAS) Q01130 (/TAS) Q01130 (/TAS)
(31 more)
Interchromatin granule GO:0035061
A class of nuclear body measuring 20-25 nm in diameter and distributed throughout the interchromatin space, linked together by thin fibrils. They are believed to be storage centers for various snRNAs, snRNPs, serine/arginine-rich proteins and RNA polymerase II. A typical mammalian cell contains 25-50 clusters of interchromatin granules. Interchromatin granule clusters do not contain the heterogeneous nuclear RNA-binding proteins (hnRNPs).
41 Q6PDU1 (/IDA) Q6PDU1 (/IDA) Q6PDU1 (/IDA) Q6PDU1 (/IDA) Q6PDU1 (/IDA) Q6PDU1 (/IDA) Q6PDU1 (/IDA) Q6PDU1 (/IDA) Q6PDU1 (/IDA) Q6PDU1 (/IDA)
(31 more)
Interchromatin granule GO:0035061
A class of nuclear body measuring 20-25 nm in diameter and distributed throughout the interchromatin space, linked together by thin fibrils. They are believed to be storage centers for various snRNAs, snRNPs, serine/arginine-rich proteins and RNA polymerase II. A typical mammalian cell contains 25-50 clusters of interchromatin granules. Interchromatin granule clusters do not contain the heterogeneous nuclear RNA-binding proteins (hnRNPs).
41 Q62093 (/ISO) Q62093 (/ISO) Q62093 (/ISO) Q62093 (/ISO) Q62093 (/ISO) Q62093 (/ISO) Q62093 (/ISO) Q62093 (/ISO) Q62093 (/ISO) Q62093 (/ISO)
(31 more)
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