The name of this superfamily has been modified since the most recent official CATH+ release (v4_4_0). At the point of the last release, this superfamily was: waiting to be named.

Functional Families

Overview of the Structural Clusters (SC) and Functional Families within this CATH Superfamily. Clusters with a representative structure are represented by a filled circle.
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FunFam 165: nuclear RNA export factor 1

Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.

There are 6 GO terms relating to "molecular function"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
20 O88984 (/IPI) Q4ZGD8 (/IPI) Q4ZGD9 (/IPI) Q8R499 (/IPI) Q99JX7 (/IPI) Q99MW6 (/IPI) Q99NI0 (/IPI) Q9H1B4 (/IPI) Q9H4D5 (/IPI) Q9UBU9 (/IPI)
(10 more)
RNA binding GO:0003723
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
11 Q9UBU9 (/HDA) Q9UBU9 (/HDA) Q9UBU9 (/HDA) Q9UBU9 (/HDA) Q9UBU9 (/HDA) Q9UBU9 (/HDA) Q9UBU9 (/HDA) Q9UBU9 (/HDA) Q9UBU9 (/HDA) Q9UBU9 (/HDA)
(1 more)
MRNA binding GO:0003729
Interacting selectively and non-covalently with messenger RNA (mRNA), an intermediate molecule between DNA and protein. mRNA includes UTR and coding sequences, but does not contain introns.
6 Q4ZGD8 (/IDA) Q4ZGD9 (/IDA) Q8R499 (/IDA) Q99JX7 (/IDA) Q99MW6 (/IDA) Q99NI0 (/IDA)
RNA binding GO:0003723
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
4 Q4ZGD8 (/ISO) Q8R499 (/ISO) Q99MW6 (/ISO) Q99NI0 (/ISO)
RNA binding GO:0003723
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
2 Q99JX7 (/IDA) Q9H1B4 (/IDA)
RNA binding GO:0003723
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
1 Q9GZY0 (/NAS)

There are 13 GO terms relating to "biological process"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
MRNA export from nucleus GO:0006406
The directed movement of mRNA from the nucleus to the cytoplasm.
13 Q9H1B4 (/IDA) Q9H4D5 (/IDA) Q9UBU9 (/IDA) Q9UBU9 (/IDA) Q9UBU9 (/IDA) Q9UBU9 (/IDA) Q9UBU9 (/IDA) Q9UBU9 (/IDA) Q9UBU9 (/IDA) Q9UBU9 (/IDA)
(3 more)
MRNA export from nucleus GO:0006406
The directed movement of mRNA from the nucleus to the cytoplasm.
12 Q9GZY0 (/TAS) Q9UBU9 (/TAS) Q9UBU9 (/TAS) Q9UBU9 (/TAS) Q9UBU9 (/TAS) Q9UBU9 (/TAS) Q9UBU9 (/TAS) Q9UBU9 (/TAS) Q9UBU9 (/TAS) Q9UBU9 (/TAS)
(2 more)
RNA export from nucleus GO:0006405
The directed movement of RNA from the nucleus to the cytoplasm.
11 Q9UBU9 (/TAS) Q9UBU9 (/TAS) Q9UBU9 (/TAS) Q9UBU9 (/TAS) Q9UBU9 (/TAS) Q9UBU9 (/TAS) Q9UBU9 (/TAS) Q9UBU9 (/TAS) Q9UBU9 (/TAS) Q9UBU9 (/TAS)
(1 more)
Poly(A)+ mRNA export from nucleus GO:0016973
The directed movement of poly(A)+ mRNA out of the nucleus into the cytoplasm.
6 Q4ZGD8 (/IPI) Q4ZGD9 (/IPI) Q8R499 (/IPI) Q99JX7 (/IPI) Q99MW6 (/IPI) Q99NI0 (/IPI)
RNA export from nucleus GO:0006405
The directed movement of RNA from the nucleus to the cytoplasm.
5 Q4ZGD8 (/IDA) Q8R499 (/IDA) Q99JX7 (/IDA) Q99MW6 (/IDA) Q99NI0 (/IDA)
RNA export from nucleus GO:0006405
The directed movement of RNA from the nucleus to the cytoplasm.
4 Q4ZGD8 (/ISO) Q8R499 (/ISO) Q99MW6 (/ISO) Q99NI0 (/ISO)
MRNA export from nucleus GO:0006406
The directed movement of mRNA from the nucleus to the cytoplasm.
3 O88984 (/ISS) Q1RMS5 (/ISS) Q5R752 (/ISS)
MRNA export from nucleus GO:0006406
The directed movement of mRNA from the nucleus to the cytoplasm.
2 Q4ZGD9 (/ISO) Q99JX7 (/ISO)
MRNA export from nucleus GO:0006406
The directed movement of mRNA from the nucleus to the cytoplasm.
1 Q9GZY0 (/NAS)
Multicellular organism development GO:0007275
The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult).
1 Q9H1B4 (/IEP)
Multicellular organism development GO:0007275
The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult).
1 Q9GZY0 (/ISS)
RNA transport GO:0050658
The directed movement of RNA, ribonucleic acids, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
1 Q9H1B4 (/IDA)
RNA transport GO:0050658
The directed movement of RNA, ribonucleic acids, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
1 Q9GZY0 (/ISS)

There are 20 GO terms relating to "cellular component"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
19 O88984 (/IDA) Q4ZGD8 (/IDA) Q8R499 (/IDA) Q99JX7 (/IDA) Q99MW6 (/IDA) Q99NI0 (/IDA) Q9H1B4 (/IDA) Q9H4D5 (/IDA) Q9UBU9 (/IDA) Q9UBU9 (/IDA)
(9 more)
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
15 O88984 (/IDA) Q4ZGD9 (/IDA) Q9H1B4 (/IDA) Q9H4D5 (/IDA) Q9UBU9 (/IDA) Q9UBU9 (/IDA) Q9UBU9 (/IDA) Q9UBU9 (/IDA) Q9UBU9 (/IDA) Q9UBU9 (/IDA)
(5 more)
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
14 E9PIN3 (/IDA) E9PIN3 (/IDA) Q9H4D5 (/IDA) Q9UBU9 (/IDA) Q9UBU9 (/IDA) Q9UBU9 (/IDA) Q9UBU9 (/IDA) Q9UBU9 (/IDA) Q9UBU9 (/IDA) Q9UBU9 (/IDA)
(4 more)
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
12 Q9GZY0 (/TAS) Q9UBU9 (/TAS) Q9UBU9 (/TAS) Q9UBU9 (/TAS) Q9UBU9 (/TAS) Q9UBU9 (/TAS) Q9UBU9 (/TAS) Q9UBU9 (/TAS) Q9UBU9 (/TAS) Q9UBU9 (/TAS)
(2 more)
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
12 Q9GZY0 (/TAS) Q9UBU9 (/TAS) Q9UBU9 (/TAS) Q9UBU9 (/TAS) Q9UBU9 (/TAS) Q9UBU9 (/TAS) Q9UBU9 (/TAS) Q9UBU9 (/TAS) Q9UBU9 (/TAS) Q9UBU9 (/TAS)
(2 more)
Nuclear speck GO:0016607
A discrete extra-nucleolar subnuclear domain, 20-50 in number, in which splicing factors are seen to be localized by immunofluorescence microscopy.
11 Q9UBU9 (/IDA) Q9UBU9 (/IDA) Q9UBU9 (/IDA) Q9UBU9 (/IDA) Q9UBU9 (/IDA) Q9UBU9 (/IDA) Q9UBU9 (/IDA) Q9UBU9 (/IDA) Q9UBU9 (/IDA) Q9UBU9 (/IDA)
(1 more)
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
5 P58797 (/ISS) Q1RMS5 (/ISS) Q5R752 (/ISS) Q99JX7 (/ISS) Q9GZY0 (/ISS)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
4 P58797 (/ISS) Q1RMS5 (/ISS) Q5R752 (/ISS) Q9GZY0 (/ISS)
Nuclear envelope GO:0005635
The double lipid bilayer enclosing the nucleus and separating its contents from the rest of the cytoplasm; includes the intermembrane space, a gap of width 20-40 nm (also called the perinuclear space).
4 Q4ZGD8 (/IDA) Q8R499 (/IDA) Q99MW6 (/IDA) Q99NI0 (/IDA)
Nuclear envelope GO:0005635
The double lipid bilayer enclosing the nucleus and separating its contents from the rest of the cytoplasm; includes the intermembrane space, a gap of width 20-40 nm (also called the perinuclear space).
4 Q4ZGD8 (/ISO) Q8R499 (/ISO) Q99MW6 (/ISO) Q99NI0 (/ISO)
Nuclear speck GO:0016607
A discrete extra-nucleolar subnuclear domain, 20-50 in number, in which splicing factors are seen to be localized by immunofluorescence microscopy.
4 O88984 (/ISS) Q1RMS5 (/ISS) Q5R752 (/ISS) Q99JX7 (/ISS)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
2 Q4ZGD9 (/ISO) Q99JX7 (/ISO)
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
2 Q4ZGD9 (/ISO) Q99JX7 (/ISO)
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
2 Q4ZGD9 (/ISO) Q99JX7 (/ISO)
Nuclear pore GO:0005643
Any of the numerous similar discrete openings in the nuclear envelope of a eukaryotic cell, where the inner and outer nuclear membranes are joined.
1 Q99JX7 (/IDA)
Nuclear speck GO:0016607
A discrete extra-nucleolar subnuclear domain, 20-50 in number, in which splicing factors are seen to be localized by immunofluorescence microscopy.
1 Q99JX7 (/ISO)
Nuclear RNA export factor complex GO:0042272
A protein complex that contains two proteins (know in several organisms, including Drosophila, as NXF1 and NXF2) and is required for the export of the majority of mRNAs from the nucleus to the cytoplasm; localized in the nucleoplasm and at both the nucleoplasmic and cytoplasmic faces of the nuclear pore complex; shuttles between the nucleus and the cytoplasm.
1 Q9H4D5 (/IDA)
Nuclear RNA export factor complex GO:0042272
A protein complex that contains two proteins (know in several organisms, including Drosophila, as NXF1 and NXF2) and is required for the export of the majority of mRNAs from the nucleus to the cytoplasm; localized in the nucleoplasm and at both the nucleoplasmic and cytoplasmic faces of the nuclear pore complex; shuttles between the nucleus and the cytoplasm.
1 Q4ZGD9 (/ISO)
Nuclear RNA export factor complex GO:0042272
A protein complex that contains two proteins (know in several organisms, including Drosophila, as NXF1 and NXF2) and is required for the export of the majority of mRNAs from the nucleus to the cytoplasm; localized in the nucleoplasm and at both the nucleoplasmic and cytoplasmic faces of the nuclear pore complex; shuttles between the nucleus and the cytoplasm.
1 Q9GZY0 (/NAS)
Nuclear inclusion body GO:0042405
An intranuclear focus at which aggregated proteins have been sequestered.
1 Q99JX7 (/IDA)
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