The name of this superfamily has been modified since the most recent official CATH+ release (v4_4_0). At the point of the last release, this superfamily was: waiting to be named.

Functional Families

Overview of the Structural Clusters (SC) and Functional Families within this CATH Superfamily. Clusters with a representative structure are represented by a filled circle.
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FunFam 5: AP complex subunit sigma

Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.

There are 3 GO terms relating to "molecular function"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
49 P61967 (/IPI) P61967 (/IPI) P61967 (/IPI) P61967 (/IPI) P61967 (/IPI) P61967 (/IPI) P61967 (/IPI) P61967 (/IPI) P61967 (/IPI) P61967 (/IPI)
(39 more)
Clathrin binding GO:0030276
Interacting selectively and non-covalently with a clathrin heavy or light chain, the main components of the coat of coated vesicles and coated pits, and which also occurs in synaptic vesicles.
23 A0A0B4KHB7 (/ISS) A0A0B4KHB7 (/ISS) A0A0B4KHB7 (/ISS) B8A403 (/ISS) B8A403 (/ISS) B8A403 (/ISS) B8A403 (/ISS) B8A403 (/ISS) B8A403 (/ISS) B8A403 (/ISS)
(13 more)
Clathrin adaptor activity GO:0035615
Bringing together a cargo protein with clathrin, responsible for the formation of endocytic vesicles.
23 A0A0B4KHB7 (/IMP) A0A0B4KHB7 (/IMP) A0A0B4KHB7 (/IMP) B8A403 (/IMP) B8A403 (/IMP) B8A403 (/IMP) B8A403 (/IMP) B8A403 (/IMP) B8A403 (/IMP) B8A403 (/IMP)
(13 more)

There are 19 GO terms relating to "biological process"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Antigen processing and presentation of exogenous peptide antigen via MHC class II GO:0019886
The process in which an antigen-presenting cell expresses a peptide antigen of exogenous origin on its cell surface in association with an MHC class II protein complex. The peptide antigen is typically, but not always, processed from a whole protein.
49 P61966 (/TAS) P61966 (/TAS) P61966 (/TAS) P61966 (/TAS) P61966 (/TAS) P61966 (/TAS) P61966 (/TAS) P61966 (/TAS) P61966 (/TAS) P61966 (/TAS)
(39 more)
Regulation of defense response to virus by virus GO:0050690
Any viral process that modulates the frequency, rate, or extent of the antiviral response of the host cell or organism.
49 P61966 (/TAS) P61966 (/TAS) P61966 (/TAS) P61966 (/TAS) P61966 (/TAS) P61966 (/TAS) P61966 (/TAS) P61966 (/TAS) P61966 (/TAS) P61966 (/TAS)
(39 more)
Intracellular protein transport GO:0006886
The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
48 P61967 (/NAS) P61967 (/NAS) P61967 (/NAS) P61967 (/NAS) P61967 (/NAS) P61967 (/NAS) P61967 (/NAS) P61967 (/NAS) P61967 (/NAS) P61967 (/NAS)
(38 more)
Receptor-mediated endocytosis GO:0006898
An endocytosis process in which cell surface receptors ensure specificity of transport. A specific receptor on the cell surface binds tightly to the extracellular macromolecule (the ligand) that it recognizes; the plasma-membrane region containing the receptor-ligand complex then undergoes endocytosis, forming a transport vesicle containing the receptor-ligand complex and excluding most other plasma-membrane proteins. Receptor-mediated endocytosis generally occurs via clathrin-coated pits and vesicles.
48 P61966 (/TAS) P61966 (/TAS) P61966 (/TAS) P61966 (/TAS) P61966 (/TAS) P61966 (/TAS) P61966 (/TAS) P61966 (/TAS) P61966 (/TAS) P61966 (/TAS)
(38 more)
Response to virus GO:0009615
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a virus.
48 P61966 (/IEP) P61966 (/IEP) P61966 (/IEP) P61966 (/IEP) P61966 (/IEP) P61966 (/IEP) P61966 (/IEP) P61966 (/IEP) P61966 (/IEP) P61966 (/IEP)
(38 more)
Vesicle-mediated transport GO:0016192
A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane.
48 P61967 (/NAS) P61967 (/NAS) P61967 (/NAS) P61967 (/NAS) P61967 (/NAS) P61967 (/NAS) P61967 (/NAS) P61967 (/NAS) P61967 (/NAS) P61967 (/NAS)
(38 more)
Vesicle-mediated transport GO:0016192
A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane.
48 P61967 (/TAS) P61967 (/TAS) P61967 (/TAS) P61967 (/TAS) P61967 (/TAS) P61967 (/TAS) P61967 (/TAS) P61967 (/TAS) P61967 (/TAS) P61967 (/TAS)
(38 more)
Retrograde transport, endosome to Golgi GO:0042147
The directed movement of membrane-bounded vesicles from endosomes back to the trans-Golgi network where they are recycled for further rounds of transport.
48 P61967 (/IMP) P61967 (/IMP) P61967 (/IMP) P61967 (/IMP) P61967 (/IMP) P61967 (/IMP) P61967 (/IMP) P61967 (/IMP) P61967 (/IMP) P61967 (/IMP)
(38 more)
Axon guidance GO:0007411
The chemotaxis process that directs the migration of an axon growth cone to a specific target site in response to a combination of attractive and repulsive cues.
23 A0A0B4KHB7 (/IMP) A0A0B4KHB7 (/IMP) A0A0B4KHB7 (/IMP) B8A403 (/IMP) B8A403 (/IMP) B8A403 (/IMP) B8A403 (/IMP) B8A403 (/IMP) B8A403 (/IMP) B8A403 (/IMP)
(13 more)
Vesicle-mediated transport GO:0016192
A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane.
23 A0A0B4KHB7 (/ISS) A0A0B4KHB7 (/ISS) A0A0B4KHB7 (/ISS) B8A403 (/ISS) B8A403 (/ISS) B8A403 (/ISS) B8A403 (/ISS) B8A403 (/ISS) B8A403 (/ISS) B8A403 (/ISS)
(13 more)
Compound eye photoreceptor development GO:0042051
The process whose specific outcome is the progression of a light-responsive receptor in the compound eye over time, from its formation to the mature structure.
23 A0A0B4KHB7 (/IMP) A0A0B4KHB7 (/IMP) A0A0B4KHB7 (/IMP) B8A403 (/IMP) B8A403 (/IMP) B8A403 (/IMP) B8A403 (/IMP) B8A403 (/IMP) B8A403 (/IMP) B8A403 (/IMP)
(13 more)
Intracellular transport GO:0046907
The directed movement of substances within a cell.
23 A0A0B4KHB7 (/IMP) A0A0B4KHB7 (/IMP) A0A0B4KHB7 (/IMP) B8A403 (/IMP) B8A403 (/IMP) B8A403 (/IMP) B8A403 (/IMP) B8A403 (/IMP) B8A403 (/IMP) B8A403 (/IMP)
(13 more)
Compound eye development GO:0048749
The process whose specific outcome is the progression of the compound eye over time, from its formation to the mature structure. The compound eye is an organ of sight that contains multiple repeating units, often arranged hexagonally. Each unit has its own lens and photoreceptor cell(s) and can generate either a single pixelated image or multiple images, per eye.
23 A0A0B4KHB7 (/IMP) A0A0B4KHB7 (/IMP) A0A0B4KHB7 (/IMP) B8A403 (/IMP) B8A403 (/IMP) B8A403 (/IMP) B8A403 (/IMP) B8A403 (/IMP) B8A403 (/IMP) B8A403 (/IMP)
(13 more)
Nervous system development GO:0007399
The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state.
11 A0A1D5NSU3 (/IMP) F1Q5Z2 (/IMP) F1Q5Z2 (/IMP) F1Q5Z2 (/IMP) F1Q5Z2 (/IMP) F1Q5Z2 (/IMP) F1Q5Z2 (/IMP) Q6NSP1 (/IMP) Q6NSP1 (/IMP) Q6NSP1 (/IMP)
(1 more)
Extracellular matrix organization GO:0030198
A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of an extracellular matrix.
11 A0A1D5NSU3 (/IMP) F1Q5Z2 (/IMP) F1Q5Z2 (/IMP) F1Q5Z2 (/IMP) F1Q5Z2 (/IMP) F1Q5Z2 (/IMP) F1Q5Z2 (/IMP) Q6NSP1 (/IMP) Q6NSP1 (/IMP) Q6NSP1 (/IMP)
(1 more)
Apical protein localization GO:0045176
Any process in which a protein is transported to, or maintained in, apical regions of the cell.
2 O16369 (/IMP) O16369 (/IMP)
Protein targeting GO:0006605
The process of targeting specific proteins to particular regions of the cell, typically membrane-bounded subcellular organelles. Usually requires an organelle specific protein sequence motif.
1 Q96PC3 (/IMP)
Protein targeting GO:0006605
The process of targeting specific proteins to particular regions of the cell, typically membrane-bounded subcellular organelles. Usually requires an organelle specific protein sequence motif.
1 Q7TN05 (/ISO)
Protein targeting GO:0006605
The process of targeting specific proteins to particular regions of the cell, typically membrane-bounded subcellular organelles. Usually requires an organelle specific protein sequence motif.
1 Q7TN05 (/ISS)

There are 18 GO terms relating to "cellular component"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Intracellular membrane-bounded organelle GO:0043231
Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane.
97 A0A024QYT6 (/IDA) A0A024QYT6 (/IDA) A0A024QYT6 (/IDA) A0A024QYT6 (/IDA) A0A024QYT6 (/IDA) A0A024QYT6 (/IDA) A0A024QYT6 (/IDA) A0A024QYT6 (/IDA) A0A024QYT6 (/IDA) A0A024QYT6 (/IDA)
(87 more)
Golgi apparatus GO:0005794
A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions.
96 A0A024QYT6 (/IDA) A0A024QYT6 (/IDA) A0A024QYT6 (/IDA) A0A024QYT6 (/IDA) A0A024QYT6 (/IDA) A0A024QYT6 (/IDA) A0A024QYT6 (/IDA) A0A024QYT6 (/IDA) A0A024QYT6 (/IDA) A0A024QYT6 (/IDA)
(86 more)
Golgi membrane GO:0000139
The lipid bilayer surrounding any of the compartments of the Golgi apparatus.
49 P61966 (/TAS) P61966 (/TAS) P61966 (/TAS) P61966 (/TAS) P61966 (/TAS) P61966 (/TAS) P61966 (/TAS) P61966 (/TAS) P61966 (/TAS) P61966 (/TAS)
(39 more)
Lysosomal membrane GO:0005765
The lipid bilayer surrounding the lysosome and separating its contents from the cell cytoplasm.
49 P61966 (/TAS) P61966 (/TAS) P61966 (/TAS) P61966 (/TAS) P61966 (/TAS) P61966 (/TAS) P61966 (/TAS) P61966 (/TAS) P61966 (/TAS) P61966 (/TAS)
(39 more)
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
49 P61966 (/TAS) P61966 (/TAS) P61966 (/TAS) P61966 (/TAS) P61966 (/TAS) P61966 (/TAS) P61966 (/TAS) P61966 (/TAS) P61966 (/TAS) P61966 (/TAS)
(39 more)
Cytoplasmic vesicle membrane GO:0030659
The lipid bilayer surrounding a cytoplasmic vesicle.
49 P61966 (/TAS) P61966 (/TAS) P61966 (/TAS) P61966 (/TAS) P61966 (/TAS) P61966 (/TAS) P61966 (/TAS) P61966 (/TAS) P61966 (/TAS) P61966 (/TAS)
(39 more)
Trans-Golgi network membrane GO:0032588
The lipid bilayer surrounding any of the compartments that make up the trans-Golgi network.
49 P61966 (/TAS) P61966 (/TAS) P61966 (/TAS) P61966 (/TAS) P61966 (/TAS) P61966 (/TAS) P61966 (/TAS) P61966 (/TAS) P61966 (/TAS) P61966 (/TAS)
(39 more)
Intracellular membrane-bounded organelle GO:0043231
Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane.
49 P61967 (/ISO) P61967 (/ISO) P61967 (/ISO) P61967 (/ISO) P61967 (/ISO) P61967 (/ISO) P61967 (/ISO) P61967 (/ISO) P61967 (/ISO) P61967 (/ISO)
(39 more)
Golgi apparatus GO:0005794
A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions.
48 P61967 (/ISO) P61967 (/ISO) P61967 (/ISO) P61967 (/ISO) P61967 (/ISO) P61967 (/ISO) P61967 (/ISO) P61967 (/ISO) P61967 (/ISO) P61967 (/ISO)
(38 more)
Trans-Golgi network GO:0005802
The network of interconnected tubular and cisternal structures located within the Golgi apparatus on the side distal to the endoplasmic reticulum, from which secretory vesicles emerge. The trans-Golgi network is important in the later stages of protein secretion where it is thought to play a key role in the sorting and targeting of secreted proteins to the correct destination.
48 P61967 (/NAS) P61967 (/NAS) P61967 (/NAS) P61967 (/NAS) P61967 (/NAS) P61967 (/NAS) P61967 (/NAS) P61967 (/NAS) P61967 (/NAS) P61967 (/NAS)
(38 more)
Membrane GO:0016020
A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
48 P61966 (/HDA) P61966 (/HDA) P61966 (/HDA) P61966 (/HDA) P61966 (/HDA) P61966 (/HDA) P61966 (/HDA) P61966 (/HDA) P61966 (/HDA) P61966 (/HDA)
(38 more)
AP-1 adaptor complex GO:0030121
A heterotetrameric AP-type membrane coat adaptor complex that consists of beta1, gamma, mu1 and sigma1 subunits and links clathrin to the membrane surface of a vesicle; vesicles with AP-1-containing coats are normally found primarily in the trans-Golgi network. In at least humans, the AP-1 complex can be heterogeneric due to the existence of multiple subunit isoforms encoded by different genes (gamma1 and gamma2, mu1A and mu1B, and sigma1A, sigma1B and sigma1C).
48 P61967 (/NAS) P61967 (/NAS) P61967 (/NAS) P61967 (/NAS) P61967 (/NAS) P61967 (/NAS) P61967 (/NAS) P61967 (/NAS) P61967 (/NAS) P61967 (/NAS)
(38 more)
AP-1 adaptor complex GO:0030121
A heterotetrameric AP-type membrane coat adaptor complex that consists of beta1, gamma, mu1 and sigma1 subunits and links clathrin to the membrane surface of a vesicle; vesicles with AP-1-containing coats are normally found primarily in the trans-Golgi network. In at least humans, the AP-1 complex can be heterogeneric due to the existence of multiple subunit isoforms encoded by different genes (gamma1 and gamma2, mu1A and mu1B, and sigma1A, sigma1B and sigma1C).
48 P61966 (/TAS) P61966 (/TAS) P61966 (/TAS) P61966 (/TAS) P61966 (/TAS) P61966 (/TAS) P61966 (/TAS) P61966 (/TAS) P61966 (/TAS) P61966 (/TAS)
(38 more)
Terminal bouton GO:0043195
Terminal inflated portion of the axon, containing the specialized apparatus necessary to release neurotransmitters. The axon terminus is considered to be the whole region of thickening and the terminal bouton is a specialized region of it.
48 P61967 (/IDA) P61967 (/IDA) P61967 (/IDA) P61967 (/IDA) P61967 (/IDA) P61967 (/IDA) P61967 (/IDA) P61967 (/IDA) P61967 (/IDA) P61967 (/IDA)
(38 more)
AP-1 adaptor complex GO:0030121
A heterotetrameric AP-type membrane coat adaptor complex that consists of beta1, gamma, mu1 and sigma1 subunits and links clathrin to the membrane surface of a vesicle; vesicles with AP-1-containing coats are normally found primarily in the trans-Golgi network. In at least humans, the AP-1 complex can be heterogeneric due to the existence of multiple subunit isoforms encoded by different genes (gamma1 and gamma2, mu1A and mu1B, and sigma1A, sigma1B and sigma1C).
25 A0A0B4KHB7 (/ISS) A0A0B4KHB7 (/ISS) A0A0B4KHB7 (/ISS) B8A403 (/ISS) B8A403 (/ISS) B8A403 (/ISS) B8A403 (/ISS) B8A403 (/ISS) B8A403 (/ISS) B8A403 (/ISS)
(15 more)
AP-1 adaptor complex GO:0030121
A heterotetrameric AP-type membrane coat adaptor complex that consists of beta1, gamma, mu1 and sigma1 subunits and links clathrin to the membrane surface of a vesicle; vesicles with AP-1-containing coats are normally found primarily in the trans-Golgi network. In at least humans, the AP-1 complex can be heterogeneric due to the existence of multiple subunit isoforms encoded by different genes (gamma1 and gamma2, mu1A and mu1B, and sigma1A, sigma1B and sigma1C).
23 A0A0B4KHB7 (/IMP) A0A0B4KHB7 (/IMP) A0A0B4KHB7 (/IMP) B8A403 (/IMP) B8A403 (/IMP) B8A403 (/IMP) B8A403 (/IMP) B8A403 (/IMP) B8A403 (/IMP) B8A403 (/IMP)
(13 more)
Plasma membrane GO:0005886
The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
11 A0A1D5NSU3 (/IDA) F1Q5Z2 (/IDA) F1Q5Z2 (/IDA) F1Q5Z2 (/IDA) F1Q5Z2 (/IDA) F1Q5Z2 (/IDA) F1Q5Z2 (/IDA) Q6NSP1 (/IDA) Q6NSP1 (/IDA) Q6NSP1 (/IDA)
(1 more)
Perinuclear region of cytoplasm GO:0048471
Cytoplasm situated near, or occurring around, the nucleus.
11 A0A1D5NSU3 (/IDA) F1Q5Z2 (/IDA) F1Q5Z2 (/IDA) F1Q5Z2 (/IDA) F1Q5Z2 (/IDA) F1Q5Z2 (/IDA) F1Q5Z2 (/IDA) Q6NSP1 (/IDA) Q6NSP1 (/IDA) Q6NSP1 (/IDA)
(1 more)
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