The name of this superfamily has been modified since the most recent official CATH+ release (v4_4_0). At the point of the last release, this superfamily was named:
"Zinc/RING finger domain, C3HC4 (zinc finger)
".
FunFam 39: PHD finger protein 13
Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.
There are 5 GO terms relating to "molecular function"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Chromatin binding GO:0003682
Interacting selectively and non-covalently with chromatin, the network of fibers of DNA, protein, and sometimes RNA, that make up the chromosomes of the eukaryotic nucleus during interphase.
|
3 | Q86YI8 (/IDA) Q86YI8 (/IDA) Q86YI8 (/IDA) |
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
|
3 | Q9BUL5 (/IPI) Q9BUL5 (/IPI) Q9BUL5 (/IPI) |
Methylated histone binding GO:0035064
Interacting selectively and non-covalently with a histone in which a residue has been modified by methylation. Histones are any of a group of water-soluble proteins found in association with the DNA of eukaroytic chromosomes.
|
3 | Q86YI8 (/NAS) Q86YI8 (/NAS) Q86YI8 (/NAS) |
Chromatin binding GO:0003682
Interacting selectively and non-covalently with chromatin, the network of fibers of DNA, protein, and sometimes RNA, that make up the chromosomes of the eukaryotic nucleus during interphase.
|
2 | Q8K2W6 (/ISO) Q8K2W6 (/ISO) |
Chromatin binding GO:0003682
Interacting selectively and non-covalently with chromatin, the network of fibers of DNA, protein, and sometimes RNA, that make up the chromosomes of the eukaryotic nucleus during interphase.
|
2 | Q8K2W6 (/ISS) Q8K2W6 (/ISS) |
There are 18 GO terms relating to "biological process"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Positive regulation of protein ubiquitination GO:0031398
Any process that activates or increases the frequency, rate or extent of the addition of ubiquitin groups to a protein.
|
9 | A5D962 (/ISS) Q5BJ10 (/ISS) Q5BJ10 (/ISS) Q5HZN9 (/ISS) Q5HZN9 (/ISS) Q5U5E5 (/ISS) Q6AY75 (/ISS) Q7SXB5 (/ISS) Q8BSN5 (/ISS) |
Negative regulation of autophagosome maturation GO:1901097
Any process that stops, prevents or reduces the frequency, rate or extent of autophagosome maturation.
|
9 | A5D962 (/ISS) Q5BJ10 (/ISS) Q5BJ10 (/ISS) Q5HZN9 (/ISS) Q5HZN9 (/ISS) Q5U5E5 (/ISS) Q6AY75 (/ISS) Q7SXB5 (/ISS) Q8BSN5 (/ISS) |
Negative regulation of autophagosome assembly GO:1902902
Any process that stops, prevents or reduces the frequency, rate or extent of autophagosome assembly.
|
9 | A5D962 (/ISS) Q5BJ10 (/ISS) Q5BJ10 (/ISS) Q5HZN9 (/ISS) Q5HZN9 (/ISS) Q5U5E5 (/ISS) Q6AY75 (/ISS) Q7SXB5 (/ISS) Q8BSN5 (/ISS) |
Mitotic cell cycle GO:0000278
Progression through the phases of the mitotic cell cycle, the most common eukaryotic cell cycle, which canonically comprises four successive phases called G1, S, G2, and M and includes replication of the genome and the subsequent segregation of chromosomes into daughter cells. In some variant cell cycles nuclear replication or nuclear division may not be followed by cell division, or G1 and G2 phases may be absent.
|
3 | Q86YI8 (/IMP) Q86YI8 (/IMP) Q86YI8 (/IMP) |
Chromosome segregation GO:0007059
The process in which genetic material, in the form of chromosomes, is organized into specific structures and then physically separated and apportioned to two or more sets. In eukaryotes, chromosome segregation begins with the condensation of chromosomes, includes chromosome separation, and ends when chromosomes have completed movement to the spindle poles.
|
3 | Q86YI8 (/IMP) Q86YI8 (/IMP) Q86YI8 (/IMP) |
Mitotic chromosome condensation GO:0007076
The cell cycle process in which chromatin structure is compacted prior to and during mitosis in eukaryotic cells.
|
3 | Q86YI8 (/IMP) Q86YI8 (/IMP) Q86YI8 (/IMP) |
Positive regulation of protein ubiquitination GO:0031398
Any process that activates or increases the frequency, rate or extent of the addition of ubiquitin groups to a protein.
|
3 | Q9BUL5 (/IMP) Q9BUL5 (/IMP) Q9BUL5 (/IMP) |
Negative regulation of autophagosome maturation GO:1901097
Any process that stops, prevents or reduces the frequency, rate or extent of autophagosome maturation.
|
3 | Q9BUL5 (/IMP) Q9BUL5 (/IMP) Q9BUL5 (/IMP) |
Negative regulation of autophagosome assembly GO:1902902
Any process that stops, prevents or reduces the frequency, rate or extent of autophagosome assembly.
|
3 | Q9BUL5 (/IMP) Q9BUL5 (/IMP) Q9BUL5 (/IMP) |
Mitotic cell cycle GO:0000278
Progression through the phases of the mitotic cell cycle, the most common eukaryotic cell cycle, which canonically comprises four successive phases called G1, S, G2, and M and includes replication of the genome and the subsequent segregation of chromosomes into daughter cells. In some variant cell cycles nuclear replication or nuclear division may not be followed by cell division, or G1 and G2 phases may be absent.
|
2 | Q8K2W6 (/ISO) Q8K2W6 (/ISO) |
Mitotic cell cycle GO:0000278
Progression through the phases of the mitotic cell cycle, the most common eukaryotic cell cycle, which canonically comprises four successive phases called G1, S, G2, and M and includes replication of the genome and the subsequent segregation of chromosomes into daughter cells. In some variant cell cycles nuclear replication or nuclear division may not be followed by cell division, or G1 and G2 phases may be absent.
|
2 | Q8K2W6 (/ISS) Q8K2W6 (/ISS) |
Chromosome segregation GO:0007059
The process in which genetic material, in the form of chromosomes, is organized into specific structures and then physically separated and apportioned to two or more sets. In eukaryotes, chromosome segregation begins with the condensation of chromosomes, includes chromosome separation, and ends when chromosomes have completed movement to the spindle poles.
|
2 | Q8K2W6 (/ISO) Q8K2W6 (/ISO) |
Chromosome segregation GO:0007059
The process in which genetic material, in the form of chromosomes, is organized into specific structures and then physically separated and apportioned to two or more sets. In eukaryotes, chromosome segregation begins with the condensation of chromosomes, includes chromosome separation, and ends when chromosomes have completed movement to the spindle poles.
|
2 | Q8K2W6 (/ISS) Q8K2W6 (/ISS) |
Mitotic chromosome condensation GO:0007076
The cell cycle process in which chromatin structure is compacted prior to and during mitosis in eukaryotic cells.
|
2 | Q8K2W6 (/ISO) Q8K2W6 (/ISO) |
Mitotic chromosome condensation GO:0007076
The cell cycle process in which chromatin structure is compacted prior to and during mitosis in eukaryotic cells.
|
2 | Q8K2W6 (/ISS) Q8K2W6 (/ISS) |
Positive regulation of protein ubiquitination GO:0031398
Any process that activates or increases the frequency, rate or extent of the addition of ubiquitin groups to a protein.
|
1 | Q8BSN5 (/ISO) |
Negative regulation of autophagosome maturation GO:1901097
Any process that stops, prevents or reduces the frequency, rate or extent of autophagosome maturation.
|
1 | Q8BSN5 (/ISO) |
Negative regulation of autophagosome assembly GO:1902902
Any process that stops, prevents or reduces the frequency, rate or extent of autophagosome assembly.
|
1 | Q8BSN5 (/ISO) |
There are 5 GO terms relating to "cellular component"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
|
5 | I3L1N0 (/IDA) I3L1N0 (/IDA) Q9BUL5 (/IDA) Q9BUL5 (/IDA) Q9BUL5 (/IDA) |
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
3 | Q86YI8 (/IDA) Q86YI8 (/IDA) Q86YI8 (/IDA) |
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
2 | Q8K2W6 (/ISO) Q8K2W6 (/ISO) |
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
2 | Q8K2W6 (/ISS) Q8K2W6 (/ISS) |
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
|
1 | Q8BSN5 (/ISO) |