The name of this superfamily has been modified since the most recent official CATH+ release (v4_4_0). At the point of the last release, this superfamily was named:

"
Zinc/RING finger domain, C3HC4 (zinc finger)
".

Functional Families

Overview of the Structural Clusters (SC) and Functional Families within this CATH Superfamily. Clusters with a representative structure are represented by a filled circle.
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FunFam 247: Uncharacterized protein, isoform B

Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.

There are 9 GO terms relating to "molecular function"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
DNA binding GO:0003677
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
14 A0A0B4JCQ7 (/ISS) A0A0B4JD03 (/ISS) A0A0B4JD33 (/ISS) A0A0B4K6T9 (/ISS) A0A0B4LEH9 (/ISS) A1Z7P5 (/ISS) A1Z7P7 (/ISS) A1Z7P8 (/ISS) A1Z7P9 (/ISS) A1Z7Q1 (/ISS)
(4 more)
SUMO transferase activity GO:0019789
Catalysis of the transfer of SUMO from one protein to another via the reaction X-SUMO + Y --> Y-SUMO + X, where both X-SUMO and Y-SUMO are covalent linkages.
4 C8V0C1 (/IMP) Q04195 (/IMP) Q04195 (/IMP) Q12216 (/IMP)
SUMO transferase activity GO:0019789
Catalysis of the transfer of SUMO from one protein to another via the reaction X-SUMO + Y --> Y-SUMO + X, where both X-SUMO and Y-SUMO are covalent linkages.
3 Q04195 (/IDA) Q04195 (/IDA) Q12216 (/IDA)
SUMO ligase activity GO:0061665
Catalysis of the transfer of SUMO to a substrate protein via the reaction X-SUMO + S --> X + S-SUMO, where X is either an E2 or E3 enzyme, the X-SUMO linkage is a thioester bond, and the S-SUMO linkage is an isopeptide bond between the C-terminal amino acid of SUMO and the epsilon-amino group of lysine residues in the substrate.
2 O94451 (/IDA) Q94361 (/IDA)
RNA polymerase II transcription factor binding GO:0001085
Interacting selectively and non-covalently with an RNA polymerase II transcription factor, any protein required to initiate or regulate transcription by RNA polymerase II.
1 Q94361 (/IPI)
Double-stranded DNA binding GO:0003690
Interacting selectively and non-covalently with double-stranded DNA.
1 Q12216 (/IDA)
Double-stranded DNA binding GO:0003690
Interacting selectively and non-covalently with double-stranded DNA.
1 Q12216 (/IMP)
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
1 O94451 (/IPI)
STAT family protein binding GO:0097677
Interacting selectively and non-covalently with any member of the signal transducers and activators of transcription (STAT) protein family. STATs are, as the name indicates, both signal transducers and transcription factors. STATs are activated by cytokines and some growth factors and thus control important biological processes including cell growth, cell differentiation, apoptosis and immune responses.
1 A1Z7P5 (/IPI)

There are 40 GO terms relating to "biological process"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Double-strand break repair via homologous recombination GO:0000724
The error-free repair of a double-strand break in DNA in which the broken DNA molecule is repaired using homologous sequences. A strand in the broken DNA searches for a homologous region in an intact chromosome to serve as the template for DNA synthesis. The restoration of two intact DNA molecules results in the exchange, reciprocal or nonreciprocal, of genetic material between the intact DNA molecule and the broken DNA molecule.
14 A0A0B4JCQ7 (/IMP) A0A0B4JD03 (/IMP) A0A0B4JD33 (/IMP) A0A0B4K6T9 (/IMP) A0A0B4LEH9 (/IMP) A1Z7P5 (/IMP) A1Z7P7 (/IMP) A1Z7P8 (/IMP) A1Z7P9 (/IMP) A1Z7Q1 (/IMP)
(4 more)
Imaginal disc growth GO:0007446
The increase in mass of imaginal discs by cell proliferation prior to metamorphosis. Imaginal discs are epithelial infoldings in the larvae of holometabolous insects that develop into adult structures (legs, antennae, wings, etc.) during metamorphosis from larval to adult form.
14 A0A0B4JCQ7 (/TAS) A0A0B4JD03 (/TAS) A0A0B4JD33 (/TAS) A0A0B4K6T9 (/TAS) A0A0B4LEH9 (/TAS) A1Z7P5 (/TAS) A1Z7P7 (/TAS) A1Z7P8 (/TAS) A1Z7P9 (/TAS) A1Z7Q1 (/TAS)
(4 more)
Hemopoiesis GO:0030097
The process whose specific outcome is the progression of the myeloid and lymphoid derived organ/tissue systems of the blood and other parts of the body over time, from formation to the mature structure. The site of hemopoiesis is variable during development, but occurs primarily in bone marrow or kidney in many adult vertebrates.
14 A0A0B4JCQ7 (/TAS) A0A0B4JD03 (/TAS) A0A0B4JD33 (/TAS) A0A0B4K6T9 (/TAS) A0A0B4LEH9 (/TAS) A1Z7P5 (/TAS) A1Z7P7 (/TAS) A1Z7P8 (/TAS) A1Z7P9 (/TAS) A1Z7Q1 (/TAS)
(4 more)
Chromosome condensation GO:0030261
The progressive compaction of dispersed interphase chromatin into threadlike chromosomes prior to mitotic or meiotic nuclear division, or during apoptosis, in eukaryotic cells.
14 A0A0B4JCQ7 (/IMP) A0A0B4JD03 (/IMP) A0A0B4JD33 (/IMP) A0A0B4K6T9 (/IMP) A0A0B4LEH9 (/IMP) A1Z7P5 (/IMP) A1Z7P7 (/IMP) A1Z7P8 (/IMP) A1Z7P9 (/IMP) A1Z7Q1 (/IMP)
(4 more)
Positive regulation of innate immune response GO:0045089
Any process that activates or increases the frequency, rate or extent of the innate immune response, the organism's first line of defense against infection.
14 A0A0B4JCQ7 (/HMP) A0A0B4JD03 (/HMP) A0A0B4JD33 (/HMP) A0A0B4K6T9 (/HMP) A0A0B4LEH9 (/HMP) A1Z7P5 (/HMP) A1Z7P7 (/HMP) A1Z7P8 (/HMP) A1Z7P9 (/HMP) A1Z7Q1 (/HMP)
(4 more)
Negative regulation of receptor signaling pathway via JAK-STAT GO:0046426
Any process that stops, prevents, or reduces the frequency, rate or extent of a receptor signaling pathway via JAK-STAT.
14 A0A0B4JCQ7 (/NAS) A0A0B4JD03 (/NAS) A0A0B4JD33 (/NAS) A0A0B4K6T9 (/NAS) A0A0B4LEH9 (/NAS) A1Z7P5 (/NAS) A1Z7P7 (/NAS) A1Z7P8 (/NAS) A1Z7P9 (/NAS) A1Z7Q1 (/NAS)
(4 more)
Compound eye development GO:0048749
The process whose specific outcome is the progression of the compound eye over time, from its formation to the mature structure. The compound eye is an organ of sight that contains multiple repeating units, often arranged hexagonally. Each unit has its own lens and photoreceptor cell(s) and can generate either a single pixelated image or multiple images, per eye.
14 A0A0B4JCQ7 (/IMP) A0A0B4JD03 (/IMP) A0A0B4JD33 (/IMP) A0A0B4K6T9 (/IMP) A0A0B4LEH9 (/IMP) A1Z7P5 (/IMP) A1Z7P7 (/IMP) A1Z7P8 (/IMP) A1Z7P9 (/IMP) A1Z7Q1 (/IMP)
(4 more)
Compound eye development GO:0048749
The process whose specific outcome is the progression of the compound eye over time, from its formation to the mature structure. The compound eye is an organ of sight that contains multiple repeating units, often arranged hexagonally. Each unit has its own lens and photoreceptor cell(s) and can generate either a single pixelated image or multiple images, per eye.
14 A0A0B4JCQ7 (/TAS) A0A0B4JD03 (/TAS) A0A0B4JD33 (/TAS) A0A0B4K6T9 (/TAS) A0A0B4LEH9 (/TAS) A1Z7P5 (/TAS) A1Z7P7 (/TAS) A1Z7P8 (/TAS) A1Z7P9 (/TAS) A1Z7Q1 (/TAS)
(4 more)
Defense response to Gram-negative bacterium GO:0050829
Reactions triggered in response to the presence of a Gram-negative bacterium that act to protect the cell or organism.
14 A0A0B4JCQ7 (/HMP) A0A0B4JD03 (/HMP) A0A0B4JD33 (/HMP) A0A0B4K6T9 (/HMP) A0A0B4LEH9 (/HMP) A1Z7P5 (/HMP) A1Z7P7 (/HMP) A1Z7P8 (/HMP) A1Z7P9 (/HMP) A1Z7Q1 (/HMP)
(4 more)
Chromosome organization GO:0051276
A process that is carried out at the cellular level that results in the assembly, arrangement of constituent parts, or disassembly of chromosomes, structures composed of a very long molecule of DNA and associated proteins that carries hereditary information. This term covers covalent modifications at the molecular level as well as spatial relationships among the major components of a chromosome.
14 A0A0B4JCQ7 (/IMP) A0A0B4JD03 (/IMP) A0A0B4JD33 (/IMP) A0A0B4K6T9 (/IMP) A0A0B4LEH9 (/IMP) A1Z7P5 (/IMP) A1Z7P7 (/IMP) A1Z7P8 (/IMP) A1Z7P9 (/IMP) A1Z7Q1 (/IMP)
(4 more)
Chromosome organization GO:0051276
A process that is carried out at the cellular level that results in the assembly, arrangement of constituent parts, or disassembly of chromosomes, structures composed of a very long molecule of DNA and associated proteins that carries hereditary information. This term covers covalent modifications at the molecular level as well as spatial relationships among the major components of a chromosome.
14 A0A0B4JCQ7 (/TAS) A0A0B4JD03 (/TAS) A0A0B4JD33 (/TAS) A0A0B4K6T9 (/TAS) A0A0B4LEH9 (/TAS) A1Z7P5 (/TAS) A1Z7P7 (/TAS) A1Z7P8 (/TAS) A1Z7P9 (/TAS) A1Z7Q1 (/TAS)
(4 more)
Protein sumoylation GO:0016925
The process in which a SUMO protein (small ubiquitin-related modifier) is conjugated to a target protein via an isopeptide bond between the carboxy-terminus of SUMO with an epsilon-amino group of a lysine residue of the target protein.
6 C8V0C1 (/IMP) O94451 (/IMP) Q04195 (/IMP) Q04195 (/IMP) Q12216 (/IMP) Q94361 (/IMP)
Protein sumoylation GO:0016925
The process in which a SUMO protein (small ubiquitin-related modifier) is conjugated to a target protein via an isopeptide bond between the carboxy-terminus of SUMO with an epsilon-amino group of a lysine residue of the target protein.
5 O94451 (/IDA) Q04195 (/IDA) Q04195 (/IDA) Q12216 (/IDA) Q94361 (/IDA)
Chromosome segregation GO:0007059
The process in which genetic material, in the form of chromosomes, is organized into specific structures and then physically separated and apportioned to two or more sets. In eukaryotes, chromosome segregation begins with the condensation of chromosomes, includes chromosome separation, and ends when chromosomes have completed movement to the spindle poles.
3 Q04195 (/IMP) Q04195 (/IMP) Q12216 (/IMP)
Protein sumoylation GO:0016925
The process in which a SUMO protein (small ubiquitin-related modifier) is conjugated to a target protein via an isopeptide bond between the carboxy-terminus of SUMO with an epsilon-amino group of a lysine residue of the target protein.
3 Q04195 (/IGI) Q04195 (/IGI) Q12216 (/IGI)
DNA double-strand break attachment to nuclear envelope GO:1990683
A process in which the DNA double-strand breaks are attached to the inner surface of the nuclear envelope proximal to the spindle pole body, or iMTOCs.
3 Q04195 (/IGI) Q04195 (/IGI) Q12216 (/IGI)
Negative regulation of protein ubiquitination GO:0031397
Any process that stops, prevents, or reduces the frequency, rate or extent of the addition of ubiquitin groups to a protein.
2 Q04195 (/IDA) Q04195 (/IDA)
Negative regulation of protein ubiquitination GO:0031397
Any process that stops, prevents, or reduces the frequency, rate or extent of the addition of ubiquitin groups to a protein.
2 Q04195 (/IMP) Q04195 (/IMP)
Regulation of mitotic recombination GO:0000019
Any process that modulates the frequency, rate or extent of DNA recombination during mitosis.
1 O94451 (/IMP)
Cellular response to DNA damage stimulus GO:0006974
Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to its DNA from environmental insults or errors during metabolism.
1 Q94361 (/IMP)
Reciprocal meiotic recombination GO:0007131
The cell cycle process in which double strand breaks are formed and repaired through a double Holliday junction intermediate. This results in the equal exchange of genetic material between non-sister chromatids in a pair of homologous chromosomes. These reciprocal recombinant products ensure the proper segregation of homologous chromosomes during meiosis I and create genetic diversity.
1 O94451 (/IMP)
Receptor signaling pathway via JAK-STAT GO:0007259
Any process in which STAT proteins (Signal Transducers and Activators of Transcription) and JAK (Janus Activated Kinase) proteins convey a signal to trigger a change in the activity or state of a cell. The receptor signaling pathway via JAK-STAT begins with activation of a receptor and proceeeds through STAT protein activation by members of the JAK family of tyrosine kinases. STAT proteins dimerize and subsequently translocate to the nucleus. The pathway ends with regulation of target gene expression by STAT proteins.
1 Q7KNF5 (/TAS)
Embryo development ending in birth or egg hatching GO:0009792
The process whose specific outcome is the progression of an embryo over time, from zygote formation until the end of the embryonic life stage. The end of the embryonic life stage is organism-specific and may be somewhat arbitrary; for mammals it is usually considered to be birth, for insects the hatching of the first instar larva from the eggshell.
1 Q94361 (/IGI)
Embryo development ending in birth or egg hatching GO:0009792
The process whose specific outcome is the progression of an embryo over time, from zygote formation until the end of the embryonic life stage. The end of the embryonic life stage is organism-specific and may be somewhat arbitrary; for mammals it is usually considered to be birth, for insects the hatching of the first instar larva from the eggshell.
1 Q94361 (/IMP)
Regulation of reciprocal meiotic recombination GO:0010520
Any process that modulates the frequency, rate or extent of recombination during meiosis. Reciprocal meiotic recombination is the cell cycle process in which double strand breaks are formed and repaired through a double Holliday junction intermediate.
1 O94451 (/IMP)
Linear element assembly GO:0030999
The cell cycle process in which linear elements are assembled in association with fission yeast chromosomes during meiotic prophase. Linear element assembly begins with LinE complex formation and ends when LinE complexes are associated with chromatin in structures visible as nuclear foci. A linear element is a proteinaceous scaffold related to the synaptonemal complex.
1 O94451 (/IMP)
Regulation of telomere maintenance via recombination GO:0032207
Any process that modulates the frequency, rate or extent of a recombinational process involved in the maintenance of proper telomeric length.
1 O94451 (/IMP)
Interstrand cross-link repair GO:0036297
Removal of a DNA interstrand crosslink (a covalent attachment of DNA bases on opposite strands of the DNA) and restoration of the DNA. DNA interstrand crosslinks occur when both strands of duplex DNA are covalently tethered together (e.g. by an exogenous or endogenous agent), thus preventing the strand unwinding necessary for essential DNA functions such as transcription and replication.
1 O94451 (/IMP)
Meiotic metaphase I plate congression GO:0043060
The alignment of chromosomes at the metaphase plate, a plane halfway between the poles of the meiotic spindle, during meiosis I.
1 Q94361 (/IMP)
Negative regulation of receptor signaling pathway via JAK-STAT GO:0046426
Any process that stops, prevents, or reduces the frequency, rate or extent of a receptor signaling pathway via JAK-STAT.
1 A1Z7P5 (/IDA)
Negative regulation of receptor signaling pathway via JAK-STAT GO:0046426
Any process that stops, prevents, or reduces the frequency, rate or extent of a receptor signaling pathway via JAK-STAT.
1 A1Z7P5 (/IGI)
Negative regulation of gene silencing GO:0060969
Any process that decreases the rate, frequency, or extent of gene silencing, the transcriptional or post-transcriptional process carried out at the cellular level that results in long-term gene inactivation.
1 Q12216 (/IMP)
Negative regulation of cellular protein catabolic process GO:1903363
Any process that stops, prevents or reduces the frequency, rate or extent of cellular protein catabolic process.
1 Q94361 (/IGI)
Negative regulation of cellular protein catabolic process GO:1903363
Any process that stops, prevents or reduces the frequency, rate or extent of cellular protein catabolic process.
1 Q94361 (/IMP)
Negative regulation of mitotic DNA damage checkpoint GO:1904290
Any process that stops, prevents or reduces the frequency, rate or extent of mitotic DNA damage checkpoint.
1 Q94361 (/IGI)
Negative regulation of mitotic DNA damage checkpoint GO:1904290
Any process that stops, prevents or reduces the frequency, rate or extent of mitotic DNA damage checkpoint.
1 Q94361 (/IMP)
Positive regulation of error-prone translesion synthesis GO:1904333
Any process that activates or increases the frequency, rate or extent of error-prone translesion synthesis.
1 Q94361 (/IGI)
Positive regulation of error-prone translesion synthesis GO:1904333
Any process that activates or increases the frequency, rate or extent of error-prone translesion synthesis.
1 Q94361 (/IMP)
Protein autosumoylation GO:1990466
The sumoylation by a protein of one or more of its own amino acid residues, or residues on an identical protein.
1 Q94361 (/IDA)
Negative regulation of double-strand break repair via homologous recombination GO:2000042
Any process that stops, prevents, or reduces the frequency, rate or extent of double-strand break repair via homologous recombination.
1 O94451 (/IGI)

There are 13 GO terms relating to "cellular component"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
14 A0A0B4JCQ7 (/IDA) A0A0B4JD03 (/IDA) A0A0B4JD33 (/IDA) A0A0B4K6T9 (/IDA) A0A0B4LEH9 (/IDA) A1Z7P5 (/IDA) A1Z7P7 (/IDA) A1Z7P8 (/IDA) A1Z7P9 (/IDA) A1Z7Q1 (/IDA)
(4 more)
Nuclear lamina GO:0005652
The fibrous, electron-dense layer lying on the nucleoplasmic side of the inner membrane of a cell nucleus, composed of lamin filaments. The polypeptides of the lamina are thought to be concerned in the dissolution of the nuclear envelope and its re-formation during mitosis. The lamina is composed of lamin A and lamin C filaments cross-linked into an orthogonal lattice, which is attached via lamin B to the inner nuclear membrane through interactions with a lamin B receptor, an IFAP, in the membrane.
14 A0A0B4JCQ7 (/IDA) A0A0B4JD03 (/IDA) A0A0B4JD33 (/IDA) A0A0B4K6T9 (/IDA) A0A0B4LEH9 (/IDA) A1Z7P5 (/IDA) A1Z7P7 (/IDA) A1Z7P8 (/IDA) A1Z7P9 (/IDA) A1Z7Q1 (/IDA)
(4 more)
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
14 A0A0B4JCQ7 (/IDA) A0A0B4JD03 (/IDA) A0A0B4JD33 (/IDA) A0A0B4K6T9 (/IDA) A0A0B4LEH9 (/IDA) A1Z7P5 (/IDA) A1Z7P7 (/IDA) A1Z7P8 (/IDA) A1Z7P9 (/IDA) A1Z7Q1 (/IDA)
(4 more)
Polytene chromosome GO:0005700
A type of chromosome in a polyploid cell, formed when multiple copies of homologous chromosomes are aligned side by side to give a giant chromosome in which distinct chromosome bands are readily visible.
14 A0A0B4JCQ7 (/IDA) A0A0B4JD03 (/IDA) A0A0B4JD33 (/IDA) A0A0B4K6T9 (/IDA) A0A0B4LEH9 (/IDA) A1Z7P5 (/IDA) A1Z7P7 (/IDA) A1Z7P8 (/IDA) A1Z7P9 (/IDA) A1Z7Q1 (/IDA)
(4 more)
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
14 A0A0B4JCQ7 (/IDA) A0A0B4JD03 (/IDA) A0A0B4JD33 (/IDA) A0A0B4K6T9 (/IDA) A0A0B4LEH9 (/IDA) A1Z7P5 (/IDA) A1Z7P7 (/IDA) A1Z7P8 (/IDA) A1Z7P9 (/IDA) A1Z7Q1 (/IDA)
(4 more)
Polytene chromosome, telomeric region GO:0035012
The terminal region of a polytene chromosome.
14 A0A0B4JCQ7 (/IDA) A0A0B4JD03 (/IDA) A0A0B4JD33 (/IDA) A0A0B4K6T9 (/IDA) A0A0B4LEH9 (/IDA) A1Z7P5 (/IDA) A1Z7P7 (/IDA) A1Z7P8 (/IDA) A1Z7P9 (/IDA) A1Z7Q1 (/IDA)
(4 more)
Nuclear chromatin GO:0000790
The ordered and organized complex of DNA, protein, and sometimes RNA, that forms the chromosome in the nucleus.
4 Q04195 (/IDA) Q04195 (/IDA) Q12216 (/IDA) Q94361 (/IDA)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
2 O94451 (/HDA) Q12216 (/HDA)
Septin ring GO:0005940
A tight ring-shaped structure that forms in the division plane at the site of cytokinesis; composed of members of the conserved family of filament-forming proteins called septins as well as septin-associated proteins. This type of septin structure is observed at the bud neck of budding fungal cells, at the site of cell division in animal cells, at the junction between the mother cell and a pseudohyphal projection, and also within hyphae of filamentous fungi at sites where a septum will form.
2 Q04195 (/IDA) Q04195 (/IDA)
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
1 Q7KNF5 (/TAS)
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
1 Q12216 (/HDA)
Site of double-strand break GO:0035861
A region of a chromosome at which a DNA double-strand break has occurred. DNA damage signaling and repair proteins accumulate at the lesion to respond to the damage and repair the DNA to form a continuous DNA helix.
1 O94451 (/IDA)
Metaphase plate GO:0070090
The intracellular plane, located halfway between the poles of the spindle, where chromosomes align during metaphase of mitotic or meiotic nuclear division.
1 Q94361 (/IDA)
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