The name of this superfamily has been modified since the most recent official CATH+ release (v4_4_0). At the point of the last release, this superfamily was named:

"
GHMP Kinase, N-terminal domain
".

Functional Families

Overview of the Structural Clusters (SC) and Functional Families within this CATH Superfamily. Clusters with a representative structure are represented by a filled circle.
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FunFam 4: Exosome complex component Rrp41

Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.

There are 1 GO terms relating to "molecular function"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
11 P46948 (/IPI) P46948 (/IPI) P46948 (/IPI) P46948 (/IPI) P46948 (/IPI) P46948 (/IPI) P46948 (/IPI) P46948 (/IPI) P46948 (/IPI) Q9UXC2 (/IPI)
(1 more)

There are 29 GO terms relating to "biological process"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) GO:0000467
Exonucleolytic digestion of a pre-rRNA molecule to generate the mature 3'-end of a 5.8S rRNA molecule derived from an originally tricistronic pre-rRNA transcript that contained the Small Subunit (SSU) rRNA, the 5.8S rRNA, and the Large Subunit (LSU) rRNA in that order from 5' to 3' along the primary transcript.
9 P46948 (/IMP) P46948 (/IMP) P46948 (/IMP) P46948 (/IMP) P46948 (/IMP) P46948 (/IMP) P46948 (/IMP) P46948 (/IMP) P46948 (/IMP)
RRNA catabolic process GO:0016075
The chemical reactions and pathways resulting in the breakdown of rRNA, ribosomal RNA, a structural constituent of ribosomes.
9 P46948 (/IMP) P46948 (/IMP) P46948 (/IMP) P46948 (/IMP) P46948 (/IMP) P46948 (/IMP) P46948 (/IMP) P46948 (/IMP) P46948 (/IMP)
Nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' GO:0034427
The chemical reactions and pathways resulting in the breakdown of the mRNA transcript body that occurs when the 3' end is not protected by a 3'-poly(A) tail; degradation proceeds in the 3' to 5' direction.
9 P46948 (/IMP) P46948 (/IMP) P46948 (/IMP) P46948 (/IMP) P46948 (/IMP) P46948 (/IMP) P46948 (/IMP) P46948 (/IMP) P46948 (/IMP)
U1 snRNA 3'-end processing GO:0034473
Any process involved in forming the mature 3' end of a U1 snRNA molecule.
9 P46948 (/IGI) P46948 (/IGI) P46948 (/IGI) P46948 (/IGI) P46948 (/IGI) P46948 (/IGI) P46948 (/IGI) P46948 (/IGI) P46948 (/IGI)
U1 snRNA 3'-end processing GO:0034473
Any process involved in forming the mature 3' end of a U1 snRNA molecule.
9 P46948 (/IMP) P46948 (/IMP) P46948 (/IMP) P46948 (/IMP) P46948 (/IMP) P46948 (/IMP) P46948 (/IMP) P46948 (/IMP) P46948 (/IMP)
U4 snRNA 3'-end processing GO:0034475
Any process involved in forming the mature 3' end of a U4 snRNA molecule.
9 P46948 (/IGI) P46948 (/IGI) P46948 (/IGI) P46948 (/IGI) P46948 (/IGI) P46948 (/IGI) P46948 (/IGI) P46948 (/IGI) P46948 (/IGI)
U4 snRNA 3'-end processing GO:0034475
Any process involved in forming the mature 3' end of a U4 snRNA molecule.
9 P46948 (/IMP) P46948 (/IMP) P46948 (/IMP) P46948 (/IMP) P46948 (/IMP) P46948 (/IMP) P46948 (/IMP) P46948 (/IMP) P46948 (/IMP)
U5 snRNA 3'-end processing GO:0034476
Any process involved in forming the mature 3' end of a U5 snRNA molecule.
9 P46948 (/IGI) P46948 (/IGI) P46948 (/IGI) P46948 (/IGI) P46948 (/IGI) P46948 (/IGI) P46948 (/IGI) P46948 (/IGI) P46948 (/IGI)
U5 snRNA 3'-end processing GO:0034476
Any process involved in forming the mature 3' end of a U5 snRNA molecule.
9 P46948 (/IMP) P46948 (/IMP) P46948 (/IMP) P46948 (/IMP) P46948 (/IMP) P46948 (/IMP) P46948 (/IMP) P46948 (/IMP) P46948 (/IMP)
Nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay GO:0070478
The chemical reactions and pathways resulting in the breakdown of the nuclear-transcribed mRNA transcript body of an mRNA in which an amino-acid codon has changed to a nonsense codon; occurs when the 3' end is not protected by a 3'-poly(A) tail; degradation proceeds in the 3' to 5' direction.
9 P46948 (/IGI) P46948 (/IGI) P46948 (/IGI) P46948 (/IGI) P46948 (/IGI) P46948 (/IGI) P46948 (/IGI) P46948 (/IGI) P46948 (/IGI)
Nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay GO:0070478
The chemical reactions and pathways resulting in the breakdown of the nuclear-transcribed mRNA transcript body of an mRNA in which an amino-acid codon has changed to a nonsense codon; occurs when the 3' end is not protected by a 3'-poly(A) tail; degradation proceeds in the 3' to 5' direction.
9 P46948 (/IMP) P46948 (/IMP) P46948 (/IMP) P46948 (/IMP) P46948 (/IMP) P46948 (/IMP) P46948 (/IMP) P46948 (/IMP) P46948 (/IMP)
Nuclear-transcribed mRNA catabolic process, non-stop decay GO:0070481
The chemical reactions and pathways resulting in the breakdown of the transcript body of a nuclear-transcribed mRNA that is lacking a stop codon.
9 P46948 (/IC) P46948 (/IC) P46948 (/IC) P46948 (/IC) P46948 (/IC) P46948 (/IC) P46948 (/IC) P46948 (/IC) P46948 (/IC)
Nonfunctional rRNA decay GO:0070651
An rRNA catabolic process that results in the targeted detection and degradation of aberrant rRNAs contained within translationally defective ribosomes, thereby acting as a quality-control system.
9 P46948 (/IC) P46948 (/IC) P46948 (/IC) P46948 (/IC) P46948 (/IC) P46948 (/IC) P46948 (/IC) P46948 (/IC) P46948 (/IC)
Nuclear mRNA surveillance GO:0071028
The set of processes involved in identifying and degrading defective or aberrant mRNAs within the nucleus.
9 P46948 (/IGI) P46948 (/IGI) P46948 (/IGI) P46948 (/IGI) P46948 (/IGI) P46948 (/IGI) P46948 (/IGI) P46948 (/IGI) P46948 (/IGI)
Nuclear mRNA surveillance GO:0071028
The set of processes involved in identifying and degrading defective or aberrant mRNAs within the nucleus.
9 P46948 (/IMP) P46948 (/IMP) P46948 (/IMP) P46948 (/IMP) P46948 (/IMP) P46948 (/IMP) P46948 (/IMP) P46948 (/IMP) P46948 (/IMP)
Nuclear polyadenylation-dependent tRNA catabolic process GO:0071038
The chemical reactions and pathways occurring in the nucleus and resulting in the breakdown of an aberrant or incorrectly modified transfer RNA (tRNA) molecule, initiated by the enzymatic addition of a sequence of adenylyl residues (polyadenylation) at the 3' end the target tRNA.
9 P46948 (/IDA) P46948 (/IDA) P46948 (/IDA) P46948 (/IDA) P46948 (/IDA) P46948 (/IDA) P46948 (/IDA) P46948 (/IDA) P46948 (/IDA)
Nuclear polyadenylation-dependent CUT catabolic process GO:0071039
The chemical reactions and pathways occurring in the nucleus and resulting in the breakdown of a cryptic unstable transcript (CUT), initiated by the enzymatic addition of a sequence of adenylyl residues (polyadenylation) at the 3' end the target CUT.
9 P46948 (/IMP) P46948 (/IMP) P46948 (/IMP) P46948 (/IMP) P46948 (/IMP) P46948 (/IMP) P46948 (/IMP) P46948 (/IMP) P46948 (/IMP)
Nuclear polyadenylation-dependent mRNA catabolic process GO:0071042
The chemical reactions and pathways occurring in the nucleus and resulting in the breakdown of a messenger RNA (mRNA) molecule, initiated by the enzymatic addition of a sequence of adenylyl residues (polyadenylation) at the 3' end the target mRNA.
9 P46948 (/IC) P46948 (/IC) P46948 (/IC) P46948 (/IC) P46948 (/IC) P46948 (/IC) P46948 (/IC) P46948 (/IC) P46948 (/IC)
Polyadenylation-dependent snoRNA 3'-end processing GO:0071051
Any process involved in forming the mature 3' end of a snoRNA molecule linked to prior polyadenylation of the 3'-end of the precursor snoRNA.
9 P46948 (/IMP) P46948 (/IMP) P46948 (/IMP) P46948 (/IMP) P46948 (/IMP) P46948 (/IMP) P46948 (/IMP) P46948 (/IMP) P46948 (/IMP)
Exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) GO:0000467
Exonucleolytic digestion of a pre-rRNA molecule to generate the mature 3'-end of a 5.8S rRNA molecule derived from an originally tricistronic pre-rRNA transcript that contained the Small Subunit (SSU) rRNA, the 5.8S rRNA, and the Large Subunit (LSU) rRNA in that order from 5' to 3' along the primary transcript.
1 O42872 (/ISO)
Termination of RNA polymerase II transcription, exosome-dependent GO:0030847
The process in which transcription of nonpolyadenylated RNA polymerase II transcripts is terminated; coupled to the maturation of the RNA 3'-end.
1 O42872 (/IMP)
Nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay GO:0070478
The chemical reactions and pathways resulting in the breakdown of the nuclear-transcribed mRNA transcript body of an mRNA in which an amino-acid codon has changed to a nonsense codon; occurs when the 3' end is not protected by a 3'-poly(A) tail; degradation proceeds in the 3' to 5' direction.
1 O42872 (/ISO)
Nuclear-transcribed mRNA catabolic process, non-stop decay GO:0070481
The chemical reactions and pathways resulting in the breakdown of the transcript body of a nuclear-transcribed mRNA that is lacking a stop codon.
1 O42872 (/ISO)
Nonfunctional rRNA decay GO:0070651
An rRNA catabolic process that results in the targeted detection and degradation of aberrant rRNAs contained within translationally defective ribosomes, thereby acting as a quality-control system.
1 O42872 (/ISO)
Nuclear RNA surveillance GO:0071027
The set of processes involved in identifying and degrading defective or aberrant RNAs within the nucleus.
1 O42872 (/IMP)
Nuclear mRNA surveillance of mRNA 3'-end processing GO:0071031
The set of processes involved in identifying and degrading mRNAs with incorrectly formed 3'-ends within the nucleus.
1 O42872 (/IMP)
Nuclear polyadenylation-dependent rRNA catabolic process GO:0071035
The chemical reactions and pathways occurring in the nucleus and resulting in the breakdown of a ribosomal RNA (rRNA) molecule, including RNA fragments released as part of processing the primary transcript into multiple mature rRNA species, initiated by the enzymatic addition of a sequence of adenylyl residues (polyadenylation) at the 3' end the target rRNA.
1 O42872 (/ISO)
Nuclear polyadenylation-dependent tRNA catabolic process GO:0071038
The chemical reactions and pathways occurring in the nucleus and resulting in the breakdown of an aberrant or incorrectly modified transfer RNA (tRNA) molecule, initiated by the enzymatic addition of a sequence of adenylyl residues (polyadenylation) at the 3' end the target tRNA.
1 O42872 (/ISO)
Nuclear polyadenylation-dependent mRNA catabolic process GO:0071042
The chemical reactions and pathways occurring in the nucleus and resulting in the breakdown of a messenger RNA (mRNA) molecule, initiated by the enzymatic addition of a sequence of adenylyl residues (polyadenylation) at the 3' end the target mRNA.
1 O42872 (/ISO)

There are 9 GO terms relating to "cellular component"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Nuclear exosome (RNase complex) GO:0000176
A ribonuclease complex that has 3-prime to 5-prime processive and distributive hydrolytic exoribonuclease activity and endoribonuclease activity, producing 5-prime-phosphomonoesters. Participates in a multitude of cellular RNA processing and degradation events preventing nuclear export and/or translation of aberrant RNAs. Restricted to processing linear and circular single-stranded RNAs (ssRNA) only. RNAs with complex secondary structures may have to be unwound or pre-processed by co-factors prior to entering the complex, esp if the 3-prime end is structured.
9 P46948 (/IDA) P46948 (/IDA) P46948 (/IDA) P46948 (/IDA) P46948 (/IDA) P46948 (/IDA) P46948 (/IDA) P46948 (/IDA) P46948 (/IDA)
Cytoplasmic exosome (RNase complex) GO:0000177
A ribonuclease complex that has 3-prime to 5-prime processive hydrolytic exoribonuclease activity producing 5-prime-phosphomonoesters. Participates in a multitude of cellular RNA processing and degradation events preventing nuclear export and/or translation of aberrant RNAs. Restricted to processing linear and circular single-stranded RNAs (ssRNA) only. RNAs with complex secondary structures may have to be unwound or pre-processed by co-factors prior to entering the complex, esp if the 3-prime end is structured.
9 P46948 (/IDA) P46948 (/IDA) P46948 (/IDA) P46948 (/IDA) P46948 (/IDA) P46948 (/IDA) P46948 (/IDA) P46948 (/IDA) P46948 (/IDA)
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
2 Q9SP08 (/IDA) Q9SP08 (/IDA)
Nuclear exosome (RNase complex) GO:0000176
A ribonuclease complex that has 3-prime to 5-prime processive and distributive hydrolytic exoribonuclease activity and endoribonuclease activity, producing 5-prime-phosphomonoesters. Participates in a multitude of cellular RNA processing and degradation events preventing nuclear export and/or translation of aberrant RNAs. Restricted to processing linear and circular single-stranded RNAs (ssRNA) only. RNAs with complex secondary structures may have to be unwound or pre-processed by co-factors prior to entering the complex, esp if the 3-prime end is structured.
1 O42872 (/EXP)
Cytoplasmic exosome (RNase complex) GO:0000177
A ribonuclease complex that has 3-prime to 5-prime processive hydrolytic exoribonuclease activity producing 5-prime-phosphomonoesters. Participates in a multitude of cellular RNA processing and degradation events preventing nuclear export and/or translation of aberrant RNAs. Restricted to processing linear and circular single-stranded RNAs (ssRNA) only. RNAs with complex secondary structures may have to be unwound or pre-processed by co-factors prior to entering the complex, esp if the 3-prime end is structured.
1 O42872 (/ISO)
Exosome (RNase complex) GO:0000178
A ribonuclease complex that has 3-prime to 5-prime exoribonuclease activity and possibly endoribonuclease activity, producing 5-prime-phosphomonoesters. Participates in a multitude of cellular RNA processing and degradation events preventing nuclear export and/or translation of aberrant RNAs. Restricted to processing linear and circular single-stranded RNAs (ssRNA) only. RNAs with complex secondary structures may have to be unwound or pre-processed by co-factors prior to entering the complex, esp if the 3-prime end is structured.
1 O42872 (/IDA)
Nuclear chromatin GO:0000790
The ordered and organized complex of DNA, protein, and sometimes RNA, that forms the chromosome in the nucleus.
1 O42872 (/IDA)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
1 O42872 (/HDA)
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
1 O42872 (/HDA)
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