The name of this superfamily has been modified since the most recent official CATH+ release (v4_4_0). At the point of the last release, this superfamily was: waiting to be named.

Functional Families

Overview of the Structural Clusters (SC) and Functional Families within this CATH Superfamily. Clusters with a representative structure are represented by a filled circle.
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FunFam 1: 50S ribosomal protein L1

Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.

There are 3 GO terms relating to "molecular function"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
181 P0A7L0 (/IPI) P0A7L0 (/IPI) P0A7L0 (/IPI) P0A7L0 (/IPI) P0A7L0 (/IPI) P0A7L0 (/IPI) P0A7L0 (/IPI) P0A7L0 (/IPI) P0A7L0 (/IPI) P0A7L0 (/IPI)
(171 more)
Structural constituent of ribosome GO:0003735
The action of a molecule that contributes to the structural integrity of the ribosome.
166 P0A7L0 (/IDA) P0A7L0 (/IDA) P0A7L0 (/IDA) P0A7L0 (/IDA) P0A7L0 (/IDA) P0A7L0 (/IDA) P0A7L0 (/IDA) P0A7L0 (/IDA) P0A7L0 (/IDA) P0A7L0 (/IDA)
(156 more)
Structural constituent of ribosome GO:0003735
The action of a molecule that contributes to the structural integrity of the ribosome.
8 Q9KV33 (/ISS) Q9KV33 (/ISS) Q9KV33 (/ISS) Q9KV33 (/ISS) Q9KV33 (/ISS) Q9KV33 (/ISS) Q9KV33 (/ISS) Q9KV33 (/ISS)

There are 4 GO terms relating to "biological process"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Ribosomal large subunit assembly GO:0000027
The aggregation, arrangement and bonding together of constituent RNAs and proteins to form the large ribosomal subunit.
166 P0A7L0 (/IDA) P0A7L0 (/IDA) P0A7L0 (/IDA) P0A7L0 (/IDA) P0A7L0 (/IDA) P0A7L0 (/IDA) P0A7L0 (/IDA) P0A7L0 (/IDA) P0A7L0 (/IDA) P0A7L0 (/IDA)
(156 more)
Negative regulation of translational initiation GO:0045947
Any process that stops, prevents, or reduces the frequency, rate or extent of translational initiation.
166 P0A7L0 (/IDA) P0A7L0 (/IDA) P0A7L0 (/IDA) P0A7L0 (/IDA) P0A7L0 (/IDA) P0A7L0 (/IDA) P0A7L0 (/IDA) P0A7L0 (/IDA) P0A7L0 (/IDA) P0A7L0 (/IDA)
(156 more)
Ribosome biogenesis GO:0042254
A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of ribosome subunits; includes transport to the sites of protein synthesis.
10 Q5HVZ2 (/ISS) Q5HVZ2 (/ISS) Q5HVZ2 (/ISS) Q5HVZ2 (/ISS) Q5HVZ2 (/ISS) Q5HVZ2 (/ISS) Q5HVZ2 (/ISS) Q5HVZ2 (/ISS) Q5HVZ2 (/ISS) Q5HVZ2 (/ISS)
Translation GO:0006412
The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
8 Q9KV33 (/ISS) Q9KV33 (/ISS) Q9KV33 (/ISS) Q9KV33 (/ISS) Q9KV33 (/ISS) Q9KV33 (/ISS) Q9KV33 (/ISS) Q9KV33 (/ISS)

There are 12 GO terms relating to "cellular component"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
166 P0A7L0 (/IDA) P0A7L0 (/IDA) P0A7L0 (/IDA) P0A7L0 (/IDA) P0A7L0 (/IDA) P0A7L0 (/IDA) P0A7L0 (/IDA) P0A7L0 (/IDA) P0A7L0 (/IDA) P0A7L0 (/IDA)
(156 more)
Cytosolic large ribosomal subunit GO:0022625
The large subunit of a ribosome located in the cytosol.
166 P0A7L0 (/IDA) P0A7L0 (/IDA) P0A7L0 (/IDA) P0A7L0 (/IDA) P0A7L0 (/IDA) P0A7L0 (/IDA) P0A7L0 (/IDA) P0A7L0 (/IDA) P0A7L0 (/IDA) P0A7L0 (/IDA)
(156 more)
Cell wall GO:0005618
The rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal, most prokaryotic cells and some protozoan parasites, maintaining their shape and protecting them from osmotic lysis. In plants it is made of cellulose and, often, lignin; in fungi it is composed largely of polysaccharides; in bacteria it is composed of peptidoglycan; in protozoan parasites such as Giardia species, it's made of carbohydrates and proteins.
8 P9WHC7 (/HDA) P9WHC7 (/HDA) P9WHC7 (/HDA) P9WHC7 (/HDA) P9WHC7 (/HDA) P9WHC7 (/HDA) P9WHC7 (/HDA) P9WHC7 (/HDA)
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
8 P9WHC7 (/HDA) P9WHC7 (/HDA) P9WHC7 (/HDA) P9WHC7 (/HDA) P9WHC7 (/HDA) P9WHC7 (/HDA) P9WHC7 (/HDA) P9WHC7 (/HDA)
Plasma membrane GO:0005886
The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
8 P9WHC7 (/HDA) P9WHC7 (/HDA) P9WHC7 (/HDA) P9WHC7 (/HDA) P9WHC7 (/HDA) P9WHC7 (/HDA) P9WHC7 (/HDA) P9WHC7 (/HDA)
Cytosolic large ribosomal subunit GO:0022625
The large subunit of a ribosome located in the cytosol.
8 Q9KV33 (/ISS) Q9KV33 (/ISS) Q9KV33 (/ISS) Q9KV33 (/ISS) Q9KV33 (/ISS) Q9KV33 (/ISS) Q9KV33 (/ISS) Q9KV33 (/ISS)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
1 Q9LY66 (/IDA)
Chloroplast GO:0009507
A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma.
1 Q9LY66 (/IDA)
Chloroplast thylakoid membrane GO:0009535
The pigmented membrane of a chloroplast thylakoid. An example of this component is found in Arabidopsis thaliana.
1 Q9LY66 (/IDA)
Chloroplast stroma GO:0009570
The space enclosed by the double membrane of a chloroplast but excluding the thylakoid space. It contains DNA, ribosomes and some temporary products of photosynthesis.
1 Q9LY66 (/IDA)
Chloroplast envelope GO:0009941
The double lipid bilayer enclosing the chloroplast and separating its contents from the rest of the cytoplasm; includes the intermembrane space.
1 Q9LY66 (/IDA)
Membrane GO:0016020
A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
1 Q9LY66 (/IDA)
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