View in Gene3D

CATH Superfamily 3.30.1360.10

RNA polymerase, RBP11-like subunit

The name of this superfamily has been modified since the most recent official CATH+ release (v4_4_0). At the point of the last release, this superfamily was named:

"
RNA polymerase, RBP11-like subunit
".

Functional Families

Overview of the Structural Clusters (SC) and Functional Families within this CATH Superfamily. Clusters with a representative structure are represented by a filled circle.
SC:1DNA-directed RNA polymerases I and III subunit RPAC2DNA-directed RNA polymerase II subunit RPB11SC:2Dna-directed rna polymerases i and iii subunitDNA-directed RNA polymerase subunit alphaDNA-directed RNA polymerase subunit alphaDNA-directed RNA polymerase II subunit RPB11DNA-directed RNA polymerase II subunit RPB3DNA-directed RNA polymerases I and III subunit RPAC2DNA-directed RNA polymerase II subunit RPB11-like proteinRNA polymerase II core subunitRNA polymerase I and III subunit CDNA-directed RNA polymerase subunit alphaRelated to DNA-directed RNA polymerase 13.3K chainRNA polymerase I and III subunit CDNA-directed RNA polymerase II subunit RPB3DNA-directed RNA polymerase alpha chain,putativeDNA-directed RNA polymerases I and III subunit RPAC1DNA-directed RNA polymerase I-like proteinDNA-directed RNA polymerase I/III subunit, putativeDNA-directed RNA polymerase-like proteinRH25219pDNA-directed RNA polymerase II subunit RPB3DNA-directed RNA polymerase subunit alphaDNA-directed RNA polymerase II subunit RPB11DNA-directed RNA polymerase II subunit RPB3Probable DNA-directed RNA polymerases I and III subunit RPAC2RNA polymerase II subunit Rpb11RNA polymerases II subunit, putativeDNA-directed RNA polymerase II subunit, putativeUncharacterized proteinRNA polymerase I and III subunit CDNA-directed RNA polymerase RPB3DNA-directed RNA polymerase II subunit RPB11DNA-directed RNA polymerase II, putativeDNA-directed RNA polymerase I and III 14 kDa polypeptide (AFU_orthologue AFUA_6G04610)Expressed proteinDNA-directed RNA polymerases II IV and V subunit 11Putative DNA-directed RNA polymerase,alpha subunitDNA-directed RNA polymerase subunit alphaDNA-directed RNA polymerase subunit alphaUncharacterized proteinDNA-directed RNA polymerases I and III 16 kDa polypeptideRNA polymerase Rpb3/Rpb11 dimerization domain-containing proteinUncharacterized proteinRNA polymerase I, and III, AC40 subunitDNA-directed RNA polymerases II IV and V subunit 11DNA-directed RNA polymerases II IV and V subunit 3DNA-directed RNA polymerases II IV and V subunit 3Os02g0723600 proteinAGAP008771-PASmall RNA polymeraseUncharacterized proteinRNA polymerase I and III subunit DUncharacterized proteinUncharacterized proteinUncharacterized proteinUncharacterized proteinUncharacterized proteinUncharacterized proteinRNA polymerase Rpb3/Rpb11 dimerisation domain containing proteinRNA polymerase Rpb3/Rpb11 dimerisation domain containing proteinRNApolymerase 14 kDa subunitRNA polymerase Rpb3/Rpb11 dimerisation domain containing proteinRNA polymerase Rpb3/Rpb11 dimerisation domain containing proteinDNA-directed RNA polymerase, alpha subunit, putativeDNA-directed RNA polymerases II IV and V subunit 11Uncharacterized proteinDNA-directed RNA polymerases II IV and V subunit 11Serine/threonine-protein kinase CG17528-like Protein
« Back to all FunFams

FunFam 6: DNA-directed RNA polymerases I and III subunit RPA...

Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.

There are 1 GO terms relating to "molecular function"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO TermAnnotationsEvidence
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
 8 P0DPB6 (/IPI) P0DPB6 (/IPI) P0DPB6 (/IPI) P0DPB6 (/IPI) P97304 (/IPI) P97304 (/IPI) Q9VIZ0 (/IPI) Q9VIZ0 (/IPI)
Showing 1 to 1 of 1 entries

There are 4 GO terms relating to "biological process"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO TermAnnotationsEvidence
Transcription by RNA polymerase I GO:0006360
The synthesis of RNA from a DNA template by RNA polymerase I (RNAP I), originating at an RNAP I promoter.
 2 Q9VIZ0 (/ISS) Q9VIZ0 (/ISS)
Ribosome biogenesis GO:0042254
A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of ribosome subunits; includes transport to the sites of protein synthesis.
 1 Q6DRI4 (/IMP)
Embryonic viscerocranium morphogenesis GO:0048703
The process in which the anatomical structures of the viscerocranium are generated and organized during the embryonic phase. The viscerocranium is the part of the skull comprising the facial bones.
 1 Q6DRI4 (/IMP)
Cartilage development GO:0051216
The process whose specific outcome is the progression of a cartilage element over time, from its formation to the mature structure. Cartilage elements are skeletal elements that consist of connective tissue dominated by extracellular matrix containing collagen type II and large amounts of proteoglycan, particularly chondroitin sulfate.
 1 Q6DRI4 (/IMP)
Showing 1 to 4 of 4 entries

There are 4 GO terms relating to "cellular component"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO TermAnnotationsEvidence
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
 2 P97304 (/TAS) P97304 (/TAS)
RNA polymerase III complex GO:0005666
RNA polymerase III, one of three nuclear DNA-directed RNA polymerases found in all eukaryotes, is a multisubunit complex; typically it produces 5S rRNA, tRNAs and some of the small nuclear RNAs. Two large subunits comprise the most conserved portion including the catalytic site and share similarity with other eukaryotic and bacterial multisubunit RNA polymerases. The remainder of the complex is composed of smaller subunits (generally ten or more), some of which are also found in RNA polymerase I and others of which are also found in RNA polymerases I and II. Although the core is competent to mediate ribonucleic acid synthesis, it requires additional factors to select the appropriate template.
 2 Q9VIZ0 (/ISS) Q9VIZ0 (/ISS)
RNA polymerase I complex GO:0005736
RNA polymerase I, one of three nuclear DNA-directed RNA polymerases found in all eukaryotes, is a multisubunit complex; typically it produces rRNAs. Two large subunits comprise the most conserved portion including the catalytic site and share similarity with other eukaryotic and bacterial multisubunit RNA polymerases. The remainder of the complex is composed of smaller subunits (generally ten or more), some of which are also found in RNA polymerase III and others of which are also found in RNA polymerases II and III. Although the core is competent to mediate ribonucleic acid synthesis, it requires additional factors to select the appropriate template.
 2 P97304 (/IDA) P97304 (/IDA)
RNA polymerase I complex GO:0005736
RNA polymerase I, one of three nuclear DNA-directed RNA polymerases found in all eukaryotes, is a multisubunit complex; typically it produces rRNAs. Two large subunits comprise the most conserved portion including the catalytic site and share similarity with other eukaryotic and bacterial multisubunit RNA polymerases. The remainder of the complex is composed of smaller subunits (generally ten or more), some of which are also found in RNA polymerase III and others of which are also found in RNA polymerases II and III. Although the core is competent to mediate ribonucleic acid synthesis, it requires additional factors to select the appropriate template.
 2 Q9VIZ0 (/ISS) Q9VIZ0 (/ISS)
Showing 1 to 4 of 4 entries
CATH-Gene3D is a Global Biodata Core Resource Learn more...