The name of this superfamily has been modified since the most recent official CATH+ release (v4_4_0). At the point of the last release, this superfamily was: waiting to be named.

Functional Families

Overview of the Structural Clusters (SC) and Functional Families within this CATH Superfamily. Clusters with a representative structure are represented by a filled circle.
« Back to all FunFams

FunFam 11: 40S ribosomal protein S12

Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.

There are 1 GO terms relating to "molecular function"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
RNA binding GO:0003723
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
60 P25398 (/HDA) P25398 (/HDA) P25398 (/HDA) P25398 (/HDA) P25398 (/HDA) P25398 (/HDA) P25398 (/HDA) P25398 (/HDA) P25398 (/HDA) P25398 (/HDA)
(50 more)

There are 7 GO terms relating to "biological process"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Nuclear-transcribed mRNA catabolic process, nonsense-mediated decay GO:0000184
The nonsense-mediated decay pathway for nuclear-transcribed mRNAs degrades mRNAs in which an amino-acid codon has changed to a nonsense codon; this prevents the translation of such mRNAs into truncated, and potentially harmful, proteins.
60 P25398 (/TAS) P25398 (/TAS) P25398 (/TAS) P25398 (/TAS) P25398 (/TAS) P25398 (/TAS) P25398 (/TAS) P25398 (/TAS) P25398 (/TAS) P25398 (/TAS)
(50 more)
Translation GO:0006412
The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
60 P25398 (/IC) P25398 (/IC) P25398 (/IC) P25398 (/IC) P25398 (/IC) P25398 (/IC) P25398 (/IC) P25398 (/IC) P25398 (/IC) P25398 (/IC)
(50 more)
Translation GO:0006412
The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
60 P25398 (/NAS) P25398 (/NAS) P25398 (/NAS) P25398 (/NAS) P25398 (/NAS) P25398 (/NAS) P25398 (/NAS) P25398 (/NAS) P25398 (/NAS) P25398 (/NAS)
(50 more)
Translational initiation GO:0006413
The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA or circRNA, and an initiation complex that contains the first aminoacyl-tRNA.
60 P25398 (/TAS) P25398 (/TAS) P25398 (/TAS) P25398 (/TAS) P25398 (/TAS) P25398 (/TAS) P25398 (/TAS) P25398 (/TAS) P25398 (/TAS) P25398 (/TAS)
(50 more)
SRP-dependent cotranslational protein targeting to membrane GO:0006614
The targeting of proteins to a membrane that occurs during translation and is dependent upon two key components, the signal-recognition particle (SRP) and the SRP receptor. SRP is a cytosolic particle that transiently binds to the endoplasmic reticulum (ER) signal sequence in a nascent protein, to the large ribosomal unit, and to the SRP receptor in the ER membrane.
60 P25398 (/TAS) P25398 (/TAS) P25398 (/TAS) P25398 (/TAS) P25398 (/TAS) P25398 (/TAS) P25398 (/TAS) P25398 (/TAS) P25398 (/TAS) P25398 (/TAS)
(50 more)
Viral transcription GO:0019083
The process by which a viral genome, or part of a viral genome, is transcribed within the host cell.
60 P25398 (/TAS) P25398 (/TAS) P25398 (/TAS) P25398 (/TAS) P25398 (/TAS) P25398 (/TAS) P25398 (/TAS) P25398 (/TAS) P25398 (/TAS) P25398 (/TAS)
(50 more)
Response to organonitrogen compound GO:0010243
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organonitrogen stimulus. An organonitrogen compound is formally a compound containing at least one carbon-nitrogen bond.
2 P63324 (/IEP) P63324 (/IEP)

There are 15 GO terms relating to "cellular component"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Cytosolic small ribosomal subunit GO:0022627
The small subunit of a ribosome located in the cytosol.
62 P25398 (/IDA) P25398 (/IDA) P25398 (/IDA) P25398 (/IDA) P25398 (/IDA) P25398 (/IDA) P25398 (/IDA) P25398 (/IDA) P25398 (/IDA) P25398 (/IDA)
(52 more)
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
60 P25398 (/TAS) P25398 (/TAS) P25398 (/TAS) P25398 (/TAS) P25398 (/TAS) P25398 (/TAS) P25398 (/TAS) P25398 (/TAS) P25398 (/TAS) P25398 (/TAS)
(50 more)
Golgi apparatus GO:0005794
A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions.
60 P25398 (/IDA) P25398 (/IDA) P25398 (/IDA) P25398 (/IDA) P25398 (/IDA) P25398 (/IDA) P25398 (/IDA) P25398 (/IDA) P25398 (/IDA) P25398 (/IDA)
(50 more)
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
60 P25398 (/IDA) P25398 (/IDA) P25398 (/IDA) P25398 (/IDA) P25398 (/IDA) P25398 (/IDA) P25398 (/IDA) P25398 (/IDA) P25398 (/IDA) P25398 (/IDA)
(50 more)
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
60 P25398 (/TAS) P25398 (/TAS) P25398 (/TAS) P25398 (/TAS) P25398 (/TAS) P25398 (/TAS) P25398 (/TAS) P25398 (/TAS) P25398 (/TAS) P25398 (/TAS)
(50 more)
Membrane GO:0016020
A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
60 P25398 (/HDA) P25398 (/HDA) P25398 (/HDA) P25398 (/HDA) P25398 (/HDA) P25398 (/HDA) P25398 (/HDA) P25398 (/HDA) P25398 (/HDA) P25398 (/HDA)
(50 more)
Cytosolic small ribosomal subunit GO:0022627
The small subunit of a ribosome located in the cytosol.
60 P25398 (/HDA) P25398 (/HDA) P25398 (/HDA) P25398 (/HDA) P25398 (/HDA) P25398 (/HDA) P25398 (/HDA) P25398 (/HDA) P25398 (/HDA) P25398 (/HDA)
(50 more)
Cytosolic small ribosomal subunit GO:0022627
The small subunit of a ribosome located in the cytosol.
60 P25398 (/NAS) P25398 (/NAS) P25398 (/NAS) P25398 (/NAS) P25398 (/NAS) P25398 (/NAS) P25398 (/NAS) P25398 (/NAS) P25398 (/NAS) P25398 (/NAS)
(50 more)
Intracellular membrane-bounded organelle GO:0043231
Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane.
60 P25398 (/IDA) P25398 (/IDA) P25398 (/IDA) P25398 (/IDA) P25398 (/IDA) P25398 (/IDA) P25398 (/IDA) P25398 (/IDA) P25398 (/IDA) P25398 (/IDA)
(50 more)
Golgi apparatus GO:0005794
A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions.
2 P63323 (/ISO) P63323 (/ISO)
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
2 P63323 (/ISO) P63323 (/ISO)
Cytosolic large ribosomal subunit GO:0022625
The large subunit of a ribosome located in the cytosol.
2 P63324 (/IDA) P63324 (/IDA)
Cytosolic large ribosomal subunit GO:0022625
The large subunit of a ribosome located in the cytosol.
2 P63323 (/ISO) P63323 (/ISO)
Cytosolic small ribosomal subunit GO:0022627
The small subunit of a ribosome located in the cytosol.
2 P63323 (/ISO) P63323 (/ISO)
Intracellular membrane-bounded organelle GO:0043231
Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane.
2 P63323 (/ISO) P63323 (/ISO)
CATH-Gene3D is a Global Biodata Core Resource Learn more...