The name of this superfamily has been modified since the most recent official CATH+ release (v4_4_0). At the point of the last release, this superfamily was named:

"
Divalent-metal-dependent TIM barrel enzymes
".

Functional Families

Overview of the Structural Clusters (SC) and Functional Families within this CATH Superfamily. Clusters with a representative structure are represented by a filled circle.
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FunFam 1: Probable endonuclease 4

Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.

There are 10 GO terms relating to "molecular function"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Endonuclease activity GO:0004519
Catalysis of the hydrolysis of ester linkages within nucleic acids by creating internal breaks.
30 P0A6C1 (/IDA) P0A6C1 (/IDA) P0A6C1 (/IDA) P0A6C1 (/IDA) P0A6C1 (/IDA) P0A6C1 (/IDA) P0A6C1 (/IDA) P0A6C1 (/IDA) P0A6C1 (/IDA) P0A6C1 (/IDA)
(20 more)
Deoxyribonuclease IV (phage-T4-induced) activity GO:0008833
Catalysis of the endonucleolytic cleavage to 5'-phosphooligonucleotide end-products.
7 Q9KPK7 (/ISS) Q9KPK7 (/ISS) Q9KPK7 (/ISS) Q9KPK7 (/ISS) Q9KPK7 (/ISS) Q9KPK7 (/ISS) Q9KPK7 (/ISS)
DNA-(apurinic or apyrimidinic site) endonuclease activity GO:0003906
Catalysis of the cleavage of the C-O-P bond in the AP site created when DNA glycosylase removes a damaged base, involved in the DNA base excision repair pathway (BER).
5 P22936 (/IDA) P22936 (/IDA) P22936 (/IDA) P22936 (/IDA) Q10002 (/IDA)
Phosphoric diester hydrolase activity GO:0008081
Catalysis of the hydrolysis of a phosphodiester to give a phosphomonoester and a free hydroxyl group.
5 P22936 (/IDA) P22936 (/IDA) P22936 (/IDA) P22936 (/IDA) Q10002 (/IDA)
Double-stranded DNA 3'-5' exodeoxyribonuclease activity GO:0008311
Catalysis of the sequential cleavage of mononucleotides from a free 3' terminus of a double-stranded DNA molecule.
5 P22936 (/IDA) P22936 (/IDA) P22936 (/IDA) P22936 (/IDA) Q10002 (/IDA)
3'-tyrosyl-DNA phosphodiesterase activity GO:0017005
Catalysis of the hydrolysis of 3'-phosphotyrosyl groups formed as covalent intermediates (in DNA backbone breakage) between DNA topoisomerase I and DNA.
5 P22936 (/IDA) P22936 (/IDA) P22936 (/IDA) P22936 (/IDA) Q10002 (/IDA)
DNA-(apurinic or apyrimidinic site) endonuclease activity GO:0003906
Catalysis of the cleavage of the C-O-P bond in the AP site created when DNA glycosylase removes a damaged base, involved in the DNA base excision repair pathway (BER).
4 P22936 (/IMP) P22936 (/IMP) P22936 (/IMP) P22936 (/IMP)
3'-5'-exodeoxyribonuclease activity GO:0008296
Catalysis of the sequential cleavage of mononucleotides from a free 3' terminus of a DNA molecule.
4 P22936 (/IDA) P22936 (/IDA) P22936 (/IDA) P22936 (/IDA)
DNA-(apurinic or apyrimidinic site) endonuclease activity GO:0003906
Catalysis of the cleavage of the C-O-P bond in the AP site created when DNA glycosylase removes a damaged base, involved in the DNA base excision repair pathway (BER).
1 A0A1D8PKJ7 (/ISA)
Class III/IV DNA-(apurinic or apyrimidinic site) endonuclease activity GO:0140080
Catalysis of the cleavage of an AP site 3' and 5' of the baseless site, generating a 3'-phosphate and a 5'-OH.
1 P50525 (/IDA)

There are 4 GO terms relating to "biological process"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Non-recombinational repair GO:0000726
A DNA repair process in which that does not require the exchange of genetic material between the broken DNA molecule and a homologous region of DNA.
30 P0A6C1 (/IDA) P0A6C1 (/IDA) P0A6C1 (/IDA) P0A6C1 (/IDA) P0A6C1 (/IDA) P0A6C1 (/IDA) P0A6C1 (/IDA) P0A6C1 (/IDA) P0A6C1 (/IDA) P0A6C1 (/IDA)
(20 more)
DNA repair GO:0006281
The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
7 Q9KPK7 (/ISS) Q9KPK7 (/ISS) Q9KPK7 (/ISS) Q9KPK7 (/ISS) Q9KPK7 (/ISS) Q9KPK7 (/ISS) Q9KPK7 (/ISS)
Base-excision repair GO:0006284
In base excision repair, an altered base is removed by a DNA glycosylase enzyme, followed by excision of the resulting sugar phosphate. The small gap left in the DNA helix is filled in by the sequential action of DNA polymerase and DNA ligase.
5 P22936 (/IDA) P22936 (/IDA) P22936 (/IDA) P22936 (/IDA) Q10002 (/IDA)
Base-excision repair GO:0006284
In base excision repair, an altered base is removed by a DNA glycosylase enzyme, followed by excision of the resulting sugar phosphate. The small gap left in the DNA helix is filled in by the sequential action of DNA polymerase and DNA ligase.
1 A0A1D8PKJ7 (/ISA)

There are 6 GO terms relating to "cellular component"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
5 P22936 (/IDA) P22936 (/IDA) P22936 (/IDA) P22936 (/IDA) P50525 (/IDA)
Mitochondrion GO:0005739
A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
4 P22936 (/IDA) P22936 (/IDA) P22936 (/IDA) P22936 (/IDA)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
1 P50525 (/HDA)
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
1 P50525 (/IDA)
Mitochondrion GO:0005739
A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
1 P50525 (/ISO)
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
1 P50525 (/HDA)
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