The name of this superfamily has been modified since the most recent official CATH+ release (v4_4_0). At the point of the last release, this superfamily was named:
"MutM-like, N-terminal
".
FunFam 7: DNA glycosylase
Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.
There are 6 GO terms relating to "molecular function"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Oxidized pyrimidine nucleobase lesion DNA N-glycosylase activity GO:0000703
Catalysis of the removal oxidized pyrimidine bases by cleaving the N-C1' glycosidic bond between the oxidized pyrimidine and the deoxyribose sugar. The reaction involves formation of a covalent enzyme-pyrimidine base intermediate. Release of the enzyme and free base by a beta-elimination or a beta, gamma-elimination mechanism results in the cleavage of the DNA backbone 3' of the apyrimidinic (AP) site.
|
8 | P9WNB9 (/IDA) P9WNB9 (/IDA) P9WNB9 (/IDA) P9WNB9 (/IDA) P9WNB9 (/IDA) P9WNB9 (/IDA) P9WNB9 (/IDA) P9WNB9 (/IDA) |
Double-stranded DNA binding GO:0003690
Interacting selectively and non-covalently with double-stranded DNA.
|
8 | P9WNB9 (/IDA) P9WNB9 (/IDA) P9WNB9 (/IDA) P9WNB9 (/IDA) P9WNB9 (/IDA) P9WNB9 (/IDA) P9WNB9 (/IDA) P9WNB9 (/IDA) |
Single-stranded DNA binding GO:0003697
Interacting selectively and non-covalently with single-stranded DNA.
|
8 | P9WNB9 (/IDA) P9WNB9 (/IDA) P9WNB9 (/IDA) P9WNB9 (/IDA) P9WNB9 (/IDA) P9WNB9 (/IDA) P9WNB9 (/IDA) P9WNB9 (/IDA) |
DNA-(apurinic or apyrimidinic site) endonuclease activity GO:0003906
Catalysis of the cleavage of the C-O-P bond in the AP site created when DNA glycosylase removes a damaged base, involved in the DNA base excision repair pathway (BER).
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8 | P9WNB9 (/IDA) P9WNB9 (/IDA) P9WNB9 (/IDA) P9WNB9 (/IDA) P9WNB9 (/IDA) P9WNB9 (/IDA) P9WNB9 (/IDA) P9WNB9 (/IDA) |
Uracil DNA N-glycosylase activity GO:0004844
Catalysis of the cleavage of the N-C1' glycosidic bond between the damaged DNA base and the deoxyribose sugar, releasing a free base and leaving an apyrimidinic (AP) site. Enzymes with this activity recognize and remove uracil bases in DNA that result from the deamination of cytosine or the misincorporation of dUTP opposite an adenine.
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8 | P9WNB9 (/IDA) P9WNB9 (/IDA) P9WNB9 (/IDA) P9WNB9 (/IDA) P9WNB9 (/IDA) P9WNB9 (/IDA) P9WNB9 (/IDA) P9WNB9 (/IDA) |
Oxidized purine nucleobase lesion DNA N-glycosylase activity GO:0008534
Catalysis of the removal of oxidized purine bases by cleaving the N-C1' glycosidic bond between the oxidized purine and the deoxyribose sugar. The reaction involves the formation of a covalent enzyme-substrate intermediate. Release of the enzyme and free base by a beta-elimination or a beta, gamma-elimination mechanism results in the cleavage of the DNA backbone 3' of the apurinic (AP) site.
|
8 | P9WNB9 (/IDA) P9WNB9 (/IDA) P9WNB9 (/IDA) P9WNB9 (/IDA) P9WNB9 (/IDA) P9WNB9 (/IDA) P9WNB9 (/IDA) P9WNB9 (/IDA) |
There are 5 GO terms relating to "biological process"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
DNA repair GO:0006281
The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
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8 | P9WNB9 (/IDA) P9WNB9 (/IDA) P9WNB9 (/IDA) P9WNB9 (/IDA) P9WNB9 (/IDA) P9WNB9 (/IDA) P9WNB9 (/IDA) P9WNB9 (/IDA) |
DNA repair GO:0006281
The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
|
8 | P9WNB9 (/IMP) P9WNB9 (/IMP) P9WNB9 (/IMP) P9WNB9 (/IMP) P9WNB9 (/IMP) P9WNB9 (/IMP) P9WNB9 (/IMP) P9WNB9 (/IMP) |
Nucleotide-excision repair GO:0006289
A DNA repair process in which a small region of the strand surrounding the damage is removed from the DNA helix as an oligonucleotide. The small gap left in the DNA helix is filled in by the sequential action of DNA polymerase and DNA ligase. Nucleotide excision repair recognizes a wide range of substrates, including damage caused by UV irradiation (pyrimidine dimers and 6-4 photoproducts) and chemicals (intrastrand cross-links and bulky adducts).
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8 | P9WNB9 (/IMP) P9WNB9 (/IMP) P9WNB9 (/IMP) P9WNB9 (/IMP) P9WNB9 (/IMP) P9WNB9 (/IMP) P9WNB9 (/IMP) P9WNB9 (/IMP) |
Response to oxidative stress GO:0006979
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals.
|
8 | P9WNB9 (/IDA) P9WNB9 (/IDA) P9WNB9 (/IDA) P9WNB9 (/IDA) P9WNB9 (/IDA) P9WNB9 (/IDA) P9WNB9 (/IDA) P9WNB9 (/IDA) |
Cellular response to oxidative stress GO:0034599
Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals.
|
8 | P9WNB9 (/IMP) P9WNB9 (/IMP) P9WNB9 (/IMP) P9WNB9 (/IMP) P9WNB9 (/IMP) P9WNB9 (/IMP) P9WNB9 (/IMP) P9WNB9 (/IMP) |
There are 0 GO terms relating to "cellular component"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.