CATH Superfamily 3.10.450.80
The name of this superfamily has been modified since the most recent official CATH+ release (v4_4_0). At the point of the last release, this superfamily was: waiting to be named.
FunFam 1: 60S ribosomal protein L44
Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.
There are 9 GO terms relating to "molecular function"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Structural constituent of ribosome GO:0003735
The action of a molecule that contributes to the structural integrity of the ribosome.
|
66 |
P0CX27 (/IC)
P0CX27 (/IC)
P0CX27 (/IC)
P0CX27 (/IC)
P0CX27 (/IC)
P0CX27 (/IC)
P0CX27 (/IC)
P0CX28 (/IC)
P0CX28 (/IC)
P0CX28 (/IC)
(56 more) |
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
|
57 |
P83881 (/IPI)
P83881 (/IPI)
P83881 (/IPI)
P83881 (/IPI)
P83881 (/IPI)
P83881 (/IPI)
P83881 (/IPI)
P83881 (/IPI)
P83881 (/IPI)
P83881 (/IPI)
(47 more) |
RNA binding GO:0003723
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
|
52 |
P83881 (/HDA)
P83881 (/HDA)
P83881 (/HDA)
P83881 (/HDA)
P83881 (/HDA)
P83881 (/HDA)
P83881 (/HDA)
P83881 (/HDA)
P83881 (/HDA)
P83881 (/HDA)
(42 more) |
Structural constituent of ribosome GO:0003735
The action of a molecule that contributes to the structural integrity of the ribosome.
|
52 |
P83881 (/NAS)
P83881 (/NAS)
P83881 (/NAS)
P83881 (/NAS)
P83881 (/NAS)
P83881 (/NAS)
P83881 (/NAS)
P83881 (/NAS)
P83881 (/NAS)
P83881 (/NAS)
(42 more) |
Structural constituent of ribosome GO:0003735
The action of a molecule that contributes to the structural integrity of the ribosome.
|
12 |
D7SG81 (/ISM)
D7SG81 (/ISM)
D7SG81 (/ISM)
D7SG81 (/ISM)
D7SG81 (/ISM)
D7SG81 (/ISM)
P17843 (/ISM)
P17843 (/ISM)
P17843 (/ISM)
P17843 (/ISM)
(2 more) |
Structural constituent of ribosome GO:0003735
The action of a molecule that contributes to the structural integrity of the ribosome.
|
11 |
Q9VLT7 (/TAS)
Q9VLT7 (/TAS)
Q9VLT7 (/TAS)
Q9VLT7 (/TAS)
Q9VLT7 (/TAS)
Q9VLT7 (/TAS)
Q9VLT7 (/TAS)
Q9VLT7 (/TAS)
Q9VLT7 (/TAS)
Q9VLT7 (/TAS)
(1 more) |
Structural constituent of ribosome GO:0003735
The action of a molecule that contributes to the structural integrity of the ribosome.
|
3 | O23290 (/IDA) O23290 (/IDA) O23290 (/IDA) |
Structural constituent of ribosome GO:0003735
The action of a molecule that contributes to the structural integrity of the ribosome.
|
1 | Q9UTI8 (/ISO) |
Structural constituent of ribosome GO:0003735
The action of a molecule that contributes to the structural integrity of the ribosome.
|
1 | Q55CW5 (/ISS) |
There are 13 GO terms relating to "biological process"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Cytoplasmic translation GO:0002181
The chemical reactions and pathways resulting in the formation of a protein in the cytoplasm. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein.
|
66 |
P0CX27 (/IC)
P0CX27 (/IC)
P0CX27 (/IC)
P0CX27 (/IC)
P0CX27 (/IC)
P0CX27 (/IC)
P0CX27 (/IC)
P0CX28 (/IC)
P0CX28 (/IC)
P0CX28 (/IC)
(56 more) |
Nuclear-transcribed mRNA catabolic process, nonsense-mediated decay GO:0000184
The nonsense-mediated decay pathway for nuclear-transcribed mRNAs degrades mRNAs in which an amino-acid codon has changed to a nonsense codon; this prevents the translation of such mRNAs into truncated, and potentially harmful, proteins.
|
52 |
P83881 (/TAS)
P83881 (/TAS)
P83881 (/TAS)
P83881 (/TAS)
P83881 (/TAS)
P83881 (/TAS)
P83881 (/TAS)
P83881 (/TAS)
P83881 (/TAS)
P83881 (/TAS)
(42 more) |
Cytoplasmic translation GO:0002181
The chemical reactions and pathways resulting in the formation of a protein in the cytoplasm. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein.
|
52 |
P83881 (/IDA)
P83881 (/IDA)
P83881 (/IDA)
P83881 (/IDA)
P83881 (/IDA)
P83881 (/IDA)
P83881 (/IDA)
P83881 (/IDA)
P83881 (/IDA)
P83881 (/IDA)
(42 more) |
Translation GO:0006412
The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
|
52 |
P83881 (/NAS)
P83881 (/NAS)
P83881 (/NAS)
P83881 (/NAS)
P83881 (/NAS)
P83881 (/NAS)
P83881 (/NAS)
P83881 (/NAS)
P83881 (/NAS)
P83881 (/NAS)
(42 more) |
Translational initiation GO:0006413
The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA or circRNA, and an initiation complex that contains the first aminoacyl-tRNA.
|
52 |
P83881 (/TAS)
P83881 (/TAS)
P83881 (/TAS)
P83881 (/TAS)
P83881 (/TAS)
P83881 (/TAS)
P83881 (/TAS)
P83881 (/TAS)
P83881 (/TAS)
P83881 (/TAS)
(42 more) |
SRP-dependent cotranslational protein targeting to membrane GO:0006614
The targeting of proteins to a membrane that occurs during translation and is dependent upon two key components, the signal-recognition particle (SRP) and the SRP receptor. SRP is a cytosolic particle that transiently binds to the endoplasmic reticulum (ER) signal sequence in a nascent protein, to the large ribosomal unit, and to the SRP receptor in the ER membrane.
|
52 |
P83881 (/TAS)
P83881 (/TAS)
P83881 (/TAS)
P83881 (/TAS)
P83881 (/TAS)
P83881 (/TAS)
P83881 (/TAS)
P83881 (/TAS)
P83881 (/TAS)
P83881 (/TAS)
(42 more) |
Viral transcription GO:0019083
The process by which a viral genome, or part of a viral genome, is transcribed within the host cell.
|
52 |
P83881 (/TAS)
P83881 (/TAS)
P83881 (/TAS)
P83881 (/TAS)
P83881 (/TAS)
P83881 (/TAS)
P83881 (/TAS)
P83881 (/TAS)
P83881 (/TAS)
P83881 (/TAS)
(42 more) |
Chordate embryonic development GO:0043009
The process whose specific outcome is the progression of the embryo over time, from zygote formation through a stage including a notochord and neural tube until birth or egg hatching.
|
29 |
P61485 (/IMP)
P61485 (/IMP)
P61485 (/IMP)
P61485 (/IMP)
P61485 (/IMP)
P61485 (/IMP)
P61485 (/IMP)
P61485 (/IMP)
P61485 (/IMP)
P61485 (/IMP)
(19 more) |
Regulation of cell cycle GO:0051726
Any process that modulates the rate or extent of progression through the cell cycle.
|
29 |
P61485 (/IMP)
P61485 (/IMP)
P61485 (/IMP)
P61485 (/IMP)
P61485 (/IMP)
P61485 (/IMP)
P61485 (/IMP)
P61485 (/IMP)
P61485 (/IMP)
P61485 (/IMP)
(19 more) |
Translation GO:0006412
The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
|
12 |
D7SG81 (/ISM)
D7SG81 (/ISM)
D7SG81 (/ISM)
D7SG81 (/ISM)
D7SG81 (/ISM)
D7SG81 (/ISM)
P17843 (/ISM)
P17843 (/ISM)
P17843 (/ISM)
P17843 (/ISM)
(2 more) |
Cytoplasmic translation GO:0002181
The chemical reactions and pathways resulting in the formation of a protein in the cytoplasm. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein.
|
11 |
Q9VLT7 (/TAS)
Q9VLT7 (/TAS)
Q9VLT7 (/TAS)
Q9VLT7 (/TAS)
Q9VLT7 (/TAS)
Q9VLT7 (/TAS)
Q9VLT7 (/TAS)
Q9VLT7 (/TAS)
Q9VLT7 (/TAS)
Q9VLT7 (/TAS)
(1 more) |
Cytoplasmic translation GO:0002181
The chemical reactions and pathways resulting in the formation of a protein in the cytoplasm. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein.
|
1 | Q9UTI8 (/ISO) |
Translation GO:0006412
The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
|
1 | Q55CW5 (/ISS) |
There are 15 GO terms relating to "cellular component"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Cytosolic large ribosomal subunit GO:0022625
The large subunit of a ribosome located in the cytosol.
|
122 |
B2RYQ8 (/IDA)
B2RYQ8 (/IDA)
B2RYQ8 (/IDA)
B2RYQ8 (/IDA)
B2RYQ8 (/IDA)
B2RYQ8 (/IDA)
B2RYQ8 (/IDA)
B2RYQ8 (/IDA)
B2RYQ8 (/IDA)
B2RYQ8 (/IDA)
(112 more) |
Endoplasmic reticulum GO:0005783
The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached).
|
62 |
H0Y3V9 (/IDA)
H0Y5B4 (/IDA)
H0Y5B4 (/IDA)
H7BZ11 (/IDA)
J3KQN4 (/IDA)
P83881 (/IDA)
P83881 (/IDA)
P83881 (/IDA)
P83881 (/IDA)
P83881 (/IDA)
(52 more) |
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
|
62 |
H0Y3V9 (/IDA)
H0Y5B4 (/IDA)
H0Y5B4 (/IDA)
H7BZ11 (/IDA)
J3KQN4 (/IDA)
P83881 (/IDA)
P83881 (/IDA)
P83881 (/IDA)
P83881 (/IDA)
P83881 (/IDA)
(52 more) |
Plasma membrane GO:0005886
The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
|
62 |
H0Y3V9 (/IDA)
H0Y5B4 (/IDA)
H0Y5B4 (/IDA)
H7BZ11 (/IDA)
J3KQN4 (/IDA)
P83881 (/IDA)
P83881 (/IDA)
P83881 (/IDA)
P83881 (/IDA)
P83881 (/IDA)
(52 more) |
Cytosolic large ribosomal subunit GO:0022625
The large subunit of a ribosome located in the cytosol.
|
53 |
P83882 (/ISO)
P83882 (/ISO)
P83882 (/ISO)
P83882 (/ISO)
P83882 (/ISO)
P83882 (/ISO)
P83882 (/ISO)
P83882 (/ISO)
P83882 (/ISO)
P83882 (/ISO)
(43 more) |
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
|
52 |
P83881 (/TAS)
P83881 (/TAS)
P83881 (/TAS)
P83881 (/TAS)
P83881 (/TAS)
P83881 (/TAS)
P83881 (/TAS)
P83881 (/TAS)
P83881 (/TAS)
P83881 (/TAS)
(42 more) |
Ribosome GO:0005840
An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.
|
52 |
P83881 (/NAS)
P83881 (/NAS)
P83881 (/NAS)
P83881 (/NAS)
P83881 (/NAS)
P83881 (/NAS)
P83881 (/NAS)
P83881 (/NAS)
P83881 (/NAS)
P83881 (/NAS)
(42 more) |
Large ribosomal subunit GO:0015934
The larger of the two subunits of a ribosome. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site).
|
52 |
P83884 (/IDA)
P83884 (/IDA)
P83884 (/IDA)
P83884 (/IDA)
P83884 (/IDA)
P83884 (/IDA)
P83884 (/IDA)
P83884 (/IDA)
P83884 (/IDA)
P83884 (/IDA)
(42 more) |
Cytosolic large ribosomal subunit GO:0022625
The large subunit of a ribosome located in the cytosol.
|
52 |
P83881 (/HDA)
P83881 (/HDA)
P83881 (/HDA)
P83881 (/HDA)
P83881 (/HDA)
P83881 (/HDA)
P83881 (/HDA)
P83881 (/HDA)
P83881 (/HDA)
P83881 (/HDA)
(42 more) |
Polysomal ribosome GO:0042788
A ribosome bound to mRNA that forms part of a polysome.
|
52 |
P83881 (/IDA)
P83881 (/IDA)
P83881 (/IDA)
P83881 (/IDA)
P83881 (/IDA)
P83881 (/IDA)
P83881 (/IDA)
P83881 (/IDA)
P83881 (/IDA)
P83881 (/IDA)
(42 more) |
Cytoplasmic side of rough endoplasmic reticulum membrane GO:0098556
The side (leaflet) of the rough endoplasmic reticulum membrane that faces the cytoplasm.
|
52 |
P83884 (/IDA)
P83884 (/IDA)
P83884 (/IDA)
P83884 (/IDA)
P83884 (/IDA)
P83884 (/IDA)
P83884 (/IDA)
P83884 (/IDA)
P83884 (/IDA)
P83884 (/IDA)
(42 more) |
Cytosolic large ribosomal subunit GO:0022625
The large subunit of a ribosome located in the cytosol.
|
11 |
Q9VLT7 (/TAS)
Q9VLT7 (/TAS)
Q9VLT7 (/TAS)
Q9VLT7 (/TAS)
Q9VLT7 (/TAS)
Q9VLT7 (/TAS)
Q9VLT7 (/TAS)
Q9VLT7 (/TAS)
Q9VLT7 (/TAS)
Q9VLT7 (/TAS)
(1 more) |
Ribosome GO:0005840
An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.
|
6 | P17843 (/ISM) P17843 (/ISM) P17843 (/ISM) P17843 (/ISM) P17843 (/ISM) P17843 (/ISM) |
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
5 | Q969Q0 (/IDA) Q969Q0 (/IDA) Q969Q0 (/IDA) Q969Q0 (/IDA) Q969Q0 (/IDA) |
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
|
1 | Q9UTI8 (/HDA) |