CATH Superfamily 3.10.290.70
The name of this superfamily has been modified since the most recent official CATH+ release (v4_4_0). At the point of the last release, this superfamily was: waiting to be named.
FunFam 1: 40S ribosomal protein S8
Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.
There are 6 GO terms relating to "molecular function"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
RNA binding GO:0003723
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
|
52 |
P62241 (/HDA)
P62241 (/HDA)
P62241 (/HDA)
P62241 (/HDA)
P62241 (/HDA)
P62241 (/HDA)
P62241 (/HDA)
P62241 (/HDA)
P62241 (/HDA)
P62241 (/HDA)
(42 more) |
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
|
52 |
Q5JR94 (/IPI)
Q5JR94 (/IPI)
Q5JR94 (/IPI)
Q5JR94 (/IPI)
Q5JR94 (/IPI)
Q5JR94 (/IPI)
Q5JR94 (/IPI)
Q5JR94 (/IPI)
Q5JR94 (/IPI)
Q5JR94 (/IPI)
(42 more) |
Structural constituent of ribosome GO:0003735
The action of a molecule that contributes to the structural integrity of the ribosome.
|
25 |
P0CX39 (/IDA)
P0CX39 (/IDA)
P0CX39 (/IDA)
P0CX39 (/IDA)
P0CX39 (/IDA)
P0CX39 (/IDA)
P0CX39 (/IDA)
P0CX39 (/IDA)
P0CX39 (/IDA)
P0CX39 (/IDA)
(15 more) |
Structural constituent of ribosome GO:0003735
The action of a molecule that contributes to the structural integrity of the ribosome.
|
18 |
Q54E24 (/ISS)
Q8IM10 (/ISS)
Q8IM10 (/ISS)
Q8IM10 (/ISS)
Q8IM10 (/ISS)
Q8IM10 (/ISS)
Q8IM10 (/ISS)
Q8IM10 (/ISS)
Q8IM10 (/ISS)
Q8IM10 (/ISS)
(8 more) |
MRNA binding GO:0003729
Interacting selectively and non-covalently with messenger RNA (mRNA), an intermediate molecule between DNA and protein. mRNA includes UTR and coding sequences, but does not contain introns.
|
2 | Q93VG5 (/IDA) Q93VG5 (/IDA) |
Structural constituent of ribosome GO:0003735
The action of a molecule that contributes to the structural integrity of the ribosome.
|
2 | O14049 (/ISO) Q9P7B2 (/ISO) |
There are 11 GO terms relating to "biological process"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Nuclear-transcribed mRNA catabolic process, nonsense-mediated decay GO:0000184
The nonsense-mediated decay pathway for nuclear-transcribed mRNAs degrades mRNAs in which an amino-acid codon has changed to a nonsense codon; this prevents the translation of such mRNAs into truncated, and potentially harmful, proteins.
|
52 |
P62241 (/TAS)
P62241 (/TAS)
P62241 (/TAS)
P62241 (/TAS)
P62241 (/TAS)
P62241 (/TAS)
P62241 (/TAS)
P62241 (/TAS)
P62241 (/TAS)
P62241 (/TAS)
(42 more) |
Translation GO:0006412
The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
|
52 |
P62241 (/IC)
P62241 (/IC)
P62241 (/IC)
P62241 (/IC)
P62241 (/IC)
P62241 (/IC)
P62241 (/IC)
P62241 (/IC)
P62241 (/IC)
P62241 (/IC)
(42 more) |
Translation GO:0006412
The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
|
52 |
P62241 (/NAS)
P62241 (/NAS)
P62241 (/NAS)
P62241 (/NAS)
P62241 (/NAS)
P62241 (/NAS)
P62241 (/NAS)
P62241 (/NAS)
P62241 (/NAS)
P62241 (/NAS)
(42 more) |
Translational initiation GO:0006413
The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA or circRNA, and an initiation complex that contains the first aminoacyl-tRNA.
|
52 |
P62241 (/TAS)
P62241 (/TAS)
P62241 (/TAS)
P62241 (/TAS)
P62241 (/TAS)
P62241 (/TAS)
P62241 (/TAS)
P62241 (/TAS)
P62241 (/TAS)
P62241 (/TAS)
(42 more) |
SRP-dependent cotranslational protein targeting to membrane GO:0006614
The targeting of proteins to a membrane that occurs during translation and is dependent upon two key components, the signal-recognition particle (SRP) and the SRP receptor. SRP is a cytosolic particle that transiently binds to the endoplasmic reticulum (ER) signal sequence in a nascent protein, to the large ribosomal unit, and to the SRP receptor in the ER membrane.
|
52 |
P62241 (/TAS)
P62241 (/TAS)
P62241 (/TAS)
P62241 (/TAS)
P62241 (/TAS)
P62241 (/TAS)
P62241 (/TAS)
P62241 (/TAS)
P62241 (/TAS)
P62241 (/TAS)
(42 more) |
Viral transcription GO:0019083
The process by which a viral genome, or part of a viral genome, is transcribed within the host cell.
|
52 |
P62241 (/TAS)
P62241 (/TAS)
P62241 (/TAS)
P62241 (/TAS)
P62241 (/TAS)
P62241 (/TAS)
P62241 (/TAS)
P62241 (/TAS)
P62241 (/TAS)
P62241 (/TAS)
(42 more) |
Maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) GO:0000462
Any process involved in the maturation of a precursor Small SubUnit (SSU) ribosomal RNA (rRNA) molecule into a mature SSU-rRNA molecule from the pre-rRNA molecule originally produced as a tricistronic rRNA transcript that contains the Small Subunit (SSU) rRNA, 5.8S rRNA, and the Large Subunit (LSU) in that order from 5' to 3' along the primary transcript.
|
20 |
P0CX39 (/IGI)
P0CX39 (/IGI)
P0CX39 (/IGI)
P0CX39 (/IGI)
P0CX39 (/IGI)
P0CX39 (/IGI)
P0CX39 (/IGI)
P0CX39 (/IGI)
P0CX39 (/IGI)
P0CX39 (/IGI)
(10 more) |
Cytoplasmic translation GO:0002181
The chemical reactions and pathways resulting in the formation of a protein in the cytoplasm. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein.
|
20 |
P0CX39 (/IC)
P0CX39 (/IC)
P0CX39 (/IC)
P0CX39 (/IC)
P0CX39 (/IC)
P0CX39 (/IC)
P0CX39 (/IC)
P0CX39 (/IC)
P0CX39 (/IC)
P0CX39 (/IC)
(10 more) |
Translation GO:0006412
The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
|
17 |
Q8IM10 (/ISS)
Q8IM10 (/ISS)
Q8IM10 (/ISS)
Q8IM10 (/ISS)
Q8IM10 (/ISS)
Q8IM10 (/ISS)
Q8IM10 (/ISS)
Q8IM10 (/ISS)
Q8IM10 (/ISS)
Q8IM10 (/ISS)
(7 more) |
Cytoplasmic translational elongation GO:0002182
The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis in the cytoplasm.
|
2 | O14049 (/NAS) Q9P7B2 (/NAS) |
Ribosome biogenesis GO:0042254
A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of ribosome subunits; includes transport to the sites of protein synthesis.
|
2 | O14049 (/ISO) Q9P7B2 (/ISO) |
There are 32 GO terms relating to "cellular component"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Ribonucleoprotein complex GO:1990904
A macromolecular complex containing both protein and RNA molecules.
|
208 |
P62242 (/ISS)
P62242 (/ISS)
P62242 (/ISS)
P62242 (/ISS)
P62242 (/ISS)
P62242 (/ISS)
P62242 (/ISS)
P62242 (/ISS)
P62242 (/ISS)
P62242 (/ISS)
(198 more) |
Cytosolic small ribosomal subunit GO:0022627
The small subunit of a ribosome located in the cytosol.
|
129 |
P0CX39 (/IDA)
P0CX39 (/IDA)
P0CX39 (/IDA)
P0CX39 (/IDA)
P0CX39 (/IDA)
P0CX39 (/IDA)
P0CX39 (/IDA)
P0CX39 (/IDA)
P0CX39 (/IDA)
P0CX39 (/IDA)
(119 more) |
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
|
111 |
P62241 (/IDA)
P62241 (/IDA)
P62241 (/IDA)
P62241 (/IDA)
P62241 (/IDA)
P62241 (/IDA)
P62241 (/IDA)
P62241 (/IDA)
P62241 (/IDA)
P62241 (/IDA)
(101 more) |
Endoplasmic reticulum GO:0005783
The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached).
|
109 |
P62241 (/IDA)
P62241 (/IDA)
P62241 (/IDA)
P62241 (/IDA)
P62241 (/IDA)
P62241 (/IDA)
P62241 (/IDA)
P62241 (/IDA)
P62241 (/IDA)
P62241 (/IDA)
(99 more) |
Cytosolic small ribosomal subunit GO:0022627
The small subunit of a ribosome located in the cytosol.
|
54 |
O14049 (/ISO)
P62242 (/ISO)
P62242 (/ISO)
P62242 (/ISO)
P62242 (/ISO)
P62242 (/ISO)
P62242 (/ISO)
P62242 (/ISO)
P62242 (/ISO)
P62242 (/ISO)
(44 more) |
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
52 |
P62241 (/HDA)
P62241 (/HDA)
P62241 (/HDA)
P62241 (/HDA)
P62241 (/HDA)
P62241 (/HDA)
P62241 (/HDA)
P62241 (/HDA)
P62241 (/HDA)
P62241 (/HDA)
(42 more) |
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
|
52 |
P62241 (/TAS)
P62241 (/TAS)
P62241 (/TAS)
P62241 (/TAS)
P62241 (/TAS)
P62241 (/TAS)
P62241 (/TAS)
P62241 (/TAS)
P62241 (/TAS)
P62241 (/TAS)
(42 more) |
Endoplasmic reticulum GO:0005783
The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached).
|
52 |
P62242 (/ISO)
P62242 (/ISO)
P62242 (/ISO)
P62242 (/ISO)
P62242 (/ISO)
P62242 (/ISO)
P62242 (/ISO)
P62242 (/ISO)
P62242 (/ISO)
P62242 (/ISO)
(42 more) |
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
|
52 |
P62242 (/ISO)
P62242 (/ISO)
P62242 (/ISO)
P62242 (/ISO)
P62242 (/ISO)
P62242 (/ISO)
P62242 (/ISO)
P62242 (/ISO)
P62242 (/ISO)
P62242 (/ISO)
(42 more) |
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
|
52 |
P62241 (/TAS)
P62241 (/TAS)
P62241 (/TAS)
P62241 (/TAS)
P62241 (/TAS)
P62241 (/TAS)
P62241 (/TAS)
P62241 (/TAS)
P62241 (/TAS)
P62241 (/TAS)
(42 more) |
Focal adhesion GO:0005925
Small region on the surface of a cell that anchors the cell to the extracellular matrix and that forms a point of termination of actin filaments.
|
52 |
P62241 (/HDA)
P62241 (/HDA)
P62241 (/HDA)
P62241 (/HDA)
P62241 (/HDA)
P62241 (/HDA)
P62241 (/HDA)
P62241 (/HDA)
P62241 (/HDA)
P62241 (/HDA)
(42 more) |
Membrane GO:0016020
A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
|
52 |
P62241 (/HDA)
P62241 (/HDA)
P62241 (/HDA)
P62241 (/HDA)
P62241 (/HDA)
P62241 (/HDA)
P62241 (/HDA)
P62241 (/HDA)
P62241 (/HDA)
P62241 (/HDA)
(42 more) |
Cytosolic small ribosomal subunit GO:0022627
The small subunit of a ribosome located in the cytosol.
|
52 |
P62241 (/HDA)
P62241 (/HDA)
P62241 (/HDA)
P62241 (/HDA)
P62241 (/HDA)
P62241 (/HDA)
P62241 (/HDA)
P62241 (/HDA)
P62241 (/HDA)
P62241 (/HDA)
(42 more) |
Cytosolic small ribosomal subunit GO:0022627
The small subunit of a ribosome located in the cytosol.
|
52 |
P62241 (/TAS)
P62241 (/TAS)
P62241 (/TAS)
P62241 (/TAS)
P62241 (/TAS)
P62241 (/TAS)
P62241 (/TAS)
P62241 (/TAS)
P62241 (/TAS)
P62241 (/TAS)
(42 more) |
Extracellular exosome GO:0070062
A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
|
52 |
P62241 (/HDA)
P62241 (/HDA)
P62241 (/HDA)
P62241 (/HDA)
P62241 (/HDA)
P62241 (/HDA)
P62241 (/HDA)
P62241 (/HDA)
P62241 (/HDA)
P62241 (/HDA)
(42 more) |
Ribonucleoprotein complex GO:1990904
A macromolecular complex containing both protein and RNA molecules.
|
52 |
P62241 (/IDA)
P62241 (/IDA)
P62241 (/IDA)
P62241 (/IDA)
P62241 (/IDA)
P62241 (/IDA)
P62241 (/IDA)
P62241 (/IDA)
P62241 (/IDA)
P62241 (/IDA)
(42 more) |
Ribonucleoprotein complex GO:1990904
A macromolecular complex containing both protein and RNA molecules.
|
52 |
P62242 (/ISO)
P62242 (/ISO)
P62242 (/ISO)
P62242 (/ISO)
P62242 (/ISO)
P62242 (/ISO)
P62242 (/ISO)
P62242 (/ISO)
P62242 (/ISO)
P62242 (/ISO)
(42 more) |
90S preribosome GO:0030686
A large ribonucleoprotein complex considered to be the earliest preribosomal complex. In S. cerevisiae, it has a size of 90S and consists of the 35S pre-rRNA, early-associating ribosomal proteins most of which are part of the small ribosomal subunit, the U3 snoRNA and associated proteins.
|
20 |
P0CX39 (/HDA)
P0CX39 (/HDA)
P0CX39 (/HDA)
P0CX39 (/HDA)
P0CX39 (/HDA)
P0CX39 (/HDA)
P0CX39 (/HDA)
P0CX39 (/HDA)
P0CX39 (/HDA)
P0CX39 (/HDA)
(10 more) |
Cytosolic small ribosomal subunit GO:0022627
The small subunit of a ribosome located in the cytosol.
|
17 |
Q8IM10 (/ISS)
Q8IM10 (/ISS)
Q8IM10 (/ISS)
Q8IM10 (/ISS)
Q8IM10 (/ISS)
Q8IM10 (/ISS)
Q8IM10 (/ISS)
Q8IM10 (/ISS)
Q8IM10 (/ISS)
Q8IM10 (/ISS)
(7 more) |
Membrane GO:0016020
A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
|
5 | Q93VG5 (/IDA) Q93VG5 (/IDA) Q9FIF3 (/IDA) Q9FIF3 (/IDA) Q9FIF3 (/IDA) |
Cytosolic ribosome GO:0022626
A ribosome located in the cytosol.
|
5 | Q93VG5 (/IDA) Q93VG5 (/IDA) Q9FIF3 (/IDA) Q9FIF3 (/IDA) Q9FIF3 (/IDA) |
Cell surface GO:0009986
The external part of the cell wall and/or plasma membrane.
|
3 | Q59T44 (/IDA) Q59T44 (/IDA) Q59T44 (/IDA) |
Cell wall GO:0005618
The rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal, most prokaryotic cells and some protozoan parasites, maintaining their shape and protecting them from osmotic lysis. In plants it is made of cellulose and, often, lignin; in fungi it is composed largely of polysaccharides; in bacteria it is composed of peptidoglycan; in protozoan parasites such as Giardia species, it's made of carbohydrates and proteins.
|
2 | Q93VG5 (/IDA) Q93VG5 (/IDA) |
Nucleolus GO:0005730
A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.
|
2 | Q93VG5 (/IDA) Q93VG5 (/IDA) |
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
|
2 | O14049 (/HDA) Q9P7B2 (/HDA) |
Plasma membrane GO:0005886
The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
|
2 | Q93VG5 (/IDA) Q93VG5 (/IDA) |
Plasmodesma GO:0009506
A fine cytoplasmic channel, found in all higher plants, that connects the cytoplasm of one cell to that of an adjacent cell.
|
2 | Q93VG5 (/IDA) Q93VG5 (/IDA) |
Chloroplast GO:0009507
A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma.
|
2 | Q93VG5 (/IDA) Q93VG5 (/IDA) |
Polysomal ribosome GO:0042788
A ribosome bound to mRNA that forms part of a polysome.
|
2 | Q93VG5 (/IDA) Q93VG5 (/IDA) |
Nucleolus GO:0005730
A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.
|
1 | P25204 (/ISO) |
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
|
1 | P25204 (/ISO) |
Extracellular matrix GO:0031012
A structure lying external to one or more cells, which provides structural support, biochemical or biomechanical cues for cells or tissues.
|
1 | Q54E24 (/HDA) |