CATH Superfamily 2.40.50.40
The name of this superfamily has been modified since the most recent official CATH+ release (v4_4_0). At the point of the last release, this superfamily was: waiting to be named.
FunFam 3: chromodomain-helicase-DNA-binding protein 3 isofor...
Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.
There are 29 GO terms relating to "molecular function"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
|
11 |
A2A8L1 (/IPI)
B1AR17 (/IPI)
E9Q614 (/IPI)
F7C528 (/IPI)
G5EBZ4 (/IPI)
O97159 (/IPI)
O97159 (/IPI)
Q12873 (/IPI)
Q14839 (/IPI)
Q6PDQ2 (/IPI)
(1 more) |
ATPase activity GO:0016887
Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.
|
4 | B1AR17 (/ISO) E9Q614 (/ISO) F7C528 (/ISO) Q8BR71 (/ISO) |
Double-stranded DNA helicase activity GO:0036121
Catalysis of the reaction: ATP + H2O = ADP + phosphate, in the presence of double-stranded DNA; drives the unwinding of a DNA helix.
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4 | B1AR17 (/ISO) E9Q614 (/ISO) F7C528 (/ISO) Q8BR71 (/ISO) |
Nucleosome-dependent ATPase activity GO:0070615
Catalysis of the reaction: ATP + H2O = ADP + phosphate. This reaction requires the presence of one or more nucleosomes.
|
4 | B1AR17 (/ISO) E9Q614 (/ISO) F7C528 (/ISO) Q8BR71 (/ISO) |
Chromatin binding GO:0003682
Interacting selectively and non-covalently with chromatin, the network of fibers of DNA, protein, and sometimes RNA, that make up the chromosomes of the eukaryotic nucleus during interphase.
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3 | D3ZD32 (/IDA) O97159 (/IDA) O97159 (/IDA) |
ATPase activity GO:0016887
Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.
|
3 | O97159 (/IDA) O97159 (/IDA) Q12873 (/IDA) |
Nucleosome-dependent ATPase activity GO:0070615
Catalysis of the reaction: ATP + H2O = ADP + phosphate. This reaction requires the presence of one or more nucleosomes.
|
3 | O97159 (/IDA) O97159 (/IDA) Q12873 (/IDA) |
DNA binding GO:0003677
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
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2 | O97159 (/IDA) O97159 (/IDA) |
DNA binding GO:0003677
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
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2 | Q12873 (/TAS) Q14839 (/TAS) |
DNA helicase activity GO:0003678
Catalysis of the reaction: ATP + H2O = ADP + phosphate; this reaction drives the unwinding of the DNA helix.
|
2 | Q12873 (/TAS) Q14839 (/TAS) |
Showing 1 to 10 of 29 entries
There are 54 GO terms relating to "biological process"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Chromatin assembly or disassembly GO:0006333
The formation or destruction of chromatin structures.
|
4 | B1AR17 (/IDA) E9Q614 (/IDA) F7C528 (/IDA) Q8BR71 (/IDA) |
Spindle organization GO:0007051
A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the spindle, the array of microtubules and associated molecules that forms between opposite poles of a eukaryotic cell during DNA segregation and serves to move the duplicated chromosomes apart.
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4 | B1AR17 (/ISO) E9Q614 (/ISO) F7C528 (/ISO) Q8BR71 (/ISO) |
Centrosome cycle GO:0007098
The cell cycle process in which centrosome duplication and separation takes place. The centrosome cycle can operate with a considerable degree of independence from other processes of the cell cycle.
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4 | B1AR17 (/ISO) E9Q614 (/ISO) F7C528 (/ISO) Q8BR71 (/ISO) |
Central nervous system development GO:0007417
The process whose specific outcome is the progression of the central nervous system over time, from its formation to the mature structure. The central nervous system is the core nervous system that serves an integrating and coordinating function. In vertebrates it consists of the brain and spinal cord. In those invertebrates with a central nervous system it typically consists of a brain, cerebral ganglia and a nerve cord.
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4 | A0A2R8Q3B4 (/IMP) A0A2R8Q555 (/IMP) A0A2R8QAE3 (/IMP) X1WBL0 (/IMP) |
ATP-dependent chromatin remodeling GO:0043044
Dynamic structural changes to eukaryotic chromatin that require energy from the hydrolysis of ATP, ranging from local changes necessary for transcriptional regulation to global changes necessary for chromosome segregation, mediated by ATP-dependent chromatin-remodelling factors.
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4 | A0A0R4IJ89 (/IDA) A0A0R4IM65 (/IDA) A0A2R8QC65 (/IDA) A0A2R8QGR4 (/IDA) |
ATP-dependent chromatin remodeling GO:0043044
Dynamic structural changes to eukaryotic chromatin that require energy from the hydrolysis of ATP, ranging from local changes necessary for transcriptional regulation to global changes necessary for chromosome segregation, mediated by ATP-dependent chromatin-remodelling factors.
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4 | B1AR17 (/ISO) E9Q614 (/ISO) F7C528 (/ISO) Q8BR71 (/ISO) |
Developmental growth GO:0048589
The increase in size or mass of an entire organism, a part of an organism or a cell, where the increase in size or mass has the specific outcome of the progression of the organism over time from one condition to another.
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4 | A0A2R8Q3B4 (/IMP) A0A2R8Q555 (/IMP) A0A2R8QAE3 (/IMP) X1WBL0 (/IMP) |
Embryonic viscerocranium morphogenesis GO:0048703
The process in which the anatomical structures of the viscerocranium are generated and organized during the embryonic phase. The viscerocranium is the part of the skull comprising the facial bones.
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4 | A0A0R4IJ89 (/IMP) A0A0R4IM65 (/IMP) A0A2R8QC65 (/IMP) A0A2R8QGR4 (/IMP) |
Head development GO:0060322
The biological process whose specific outcome is the progression of a head from an initial condition to its mature state. The head is the anterior-most division of the body.
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4 | A0A0R4IJ89 (/IMP) A0A0R4IM65 (/IMP) A0A2R8QC65 (/IMP) A0A2R8QGR4 (/IMP) |
ATP-dependent chromatin remodeling GO:0043044
Dynamic structural changes to eukaryotic chromatin that require energy from the hydrolysis of ATP, ranging from local changes necessary for transcriptional regulation to global changes necessary for chromosome segregation, mediated by ATP-dependent chromatin-remodelling factors.
|
3 | O97159 (/IMP) O97159 (/IMP) Q12873 (/IMP) |
Showing 1 to 10 of 54 entries
There are 35 GO terms relating to "cellular component"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
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10 | A0A0C4DGG9 (/IDA) A2A8L1 (/IDA) D3ZD32 (/IDA) F5GWX5 (/IDA) O97159 (/IDA) O97159 (/IDA) Q12873 (/IDA) Q14839 (/IDA) Q6PDQ2 (/IDA) Q8TDI0 (/IDA) |
NuRD complex GO:0016581
An approximately 2 MDa multi-subunit complex that exhibits ATP-dependent chromatin remodeling activity in addition to histone deacetylase (HDAC) activity, and has been shown to establish transcriptional repression of a number of target genes in vertebrates, invertebrates and fungi. Amongst its subunits, the NuRD complex contains histone deacetylases, histone binding proteins and Mi-2-like proteins.
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8 | A2A8L1 (/IDA) B1AR17 (/IDA) E9Q614 (/IDA) F7C528 (/IDA) Q12873 (/IDA) Q14839 (/IDA) Q6PDQ2 (/IDA) Q8BR71 (/IDA) |
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
6 | A2A8L1 (/ISO) B1AR17 (/ISO) E9Q614 (/ISO) F7C528 (/ISO) Q6PDQ2 (/ISO) Q8BR71 (/ISO) |
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
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5 | B1AR17 (/ISO) E9Q614 (/ISO) F7C528 (/ISO) Q6PDQ2 (/ISO) Q8BR71 (/ISO) |
Centrosome GO:0005813
A structure comprised of a core structure (in most organisms, a pair of centrioles) and peripheral material from which a microtubule-based structure, such as a spindle apparatus, is organized. Centrosomes occur close to the nucleus during interphase in many eukaryotic cells, though in animal cells it changes continually during the cell-division cycle.
|
5 | B1AR17 (/ISO) E9Q614 (/ISO) F7C528 (/ISO) Q6PDQ2 (/ISO) Q8BR71 (/ISO) |
NuRD complex GO:0016581
An approximately 2 MDa multi-subunit complex that exhibits ATP-dependent chromatin remodeling activity in addition to histone deacetylase (HDAC) activity, and has been shown to establish transcriptional repression of a number of target genes in vertebrates, invertebrates and fungi. Amongst its subunits, the NuRD complex contains histone deacetylases, histone binding proteins and Mi-2-like proteins.
|
5 | B1AR17 (/ISO) E9Q614 (/ISO) F7C528 (/ISO) Q6PDQ2 (/ISO) Q8BR71 (/ISO) |
NuRD complex GO:0016581
An approximately 2 MDa multi-subunit complex that exhibits ATP-dependent chromatin remodeling activity in addition to histone deacetylase (HDAC) activity, and has been shown to establish transcriptional repression of a number of target genes in vertebrates, invertebrates and fungi. Amongst its subunits, the NuRD complex contains histone deacetylases, histone binding proteins and Mi-2-like proteins.
|
5 | D3ZD32 (/ISS) G5EBZ4 (/ISS) O97159 (/ISS) O97159 (/ISS) Q8TDI0 (/ISS) |
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
|
4 | B1AR17 (/TAS) Q12873 (/TAS) Q14839 (/TAS) Q6PDQ2 (/TAS) |
Nucleolus GO:0005730
A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.
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4 | B1AR17 (/ISO) E9Q614 (/ISO) F7C528 (/ISO) Q8BR71 (/ISO) |
Microtubule organizing center GO:0005815
An intracellular structure that can catalyze gamma-tubulin-dependent microtubule nucleation and that can anchor microtubules by interacting with their minus ends, plus ends or sides.
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4 | B1AR17 (/ISO) E9Q614 (/ISO) F7C528 (/ISO) Q8BR71 (/ISO) |
Showing 1 to 10 of 35 entries