The name of this superfamily has been modified since the most recent official CATH+ release (v4_4_0). At the point of the last release, this superfamily was named:
"Nucleic acid-binding proteins
".
FunFam 72: SOSS complex subunit B2
Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.
There are 9 GO terms relating to "molecular function"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Single-stranded DNA binding GO:0003697
Interacting selectively and non-covalently with single-stranded DNA.
|
12 |
A6QLK2 (/ISS)
Q3SWT1 (/ISS)
Q5FVP2 (/ISS)
Q5PRC7 (/ISS)
Q66K94 (/ISS)
Q6DE02 (/ISS)
Q6DE02 (/ISS)
Q6NRF9 (/ISS)
Q8BGW5 (/ISS)
Q8R2Y9 (/ISS)
(2 more) |
Single-stranded DNA binding GO:0003697
Interacting selectively and non-covalently with single-stranded DNA.
|
6 | Q8BGW5 (/IDA) Q9BQ15 (/IDA) Q9BQ15 (/IDA) Q9BQ15 (/IDA) Q9BQ15 (/IDA) Q9BQ15 (/IDA) |
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
|
6 | Q96AH0 (/IPI) Q9BQ15 (/IPI) Q9BQ15 (/IPI) Q9BQ15 (/IPI) Q9BQ15 (/IPI) Q9BQ15 (/IPI) |
DNA polymerase binding GO:0070182
Interacting selectively and non-covalently with a DNA polymerase.
|
5 | Q9BQ15 (/IPI) Q9BQ15 (/IPI) Q9BQ15 (/IPI) Q9BQ15 (/IPI) Q9BQ15 (/IPI) |
G-rich strand telomeric DNA binding GO:0098505
Interacting selectively and non-covalently with G-rich, single-stranded, telomere-associated DNA.
|
5 | Q9BQ15 (/IDA) Q9BQ15 (/IDA) Q9BQ15 (/IDA) Q9BQ15 (/IDA) Q9BQ15 (/IDA) |
Single-stranded DNA binding GO:0003697
Interacting selectively and non-covalently with single-stranded DNA.
|
1 | Q8R2Y9 (/ISO) |
RNA binding GO:0003723
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
|
1 | Q8BGW5 (/IDA) |
DNA polymerase binding GO:0070182
Interacting selectively and non-covalently with a DNA polymerase.
|
1 | Q8R2Y9 (/ISO) |
G-rich strand telomeric DNA binding GO:0098505
Interacting selectively and non-covalently with G-rich, single-stranded, telomere-associated DNA.
|
1 | Q8R2Y9 (/ISO) |
There are 20 GO terms relating to "biological process"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
DNA repair GO:0006281
The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
|
16 |
A6QLK2 (/ISS)
Q3SWT1 (/ISS)
Q5FVP2 (/ISS)
Q5PRC7 (/ISS)
Q66K94 (/ISS)
Q6DE02 (/ISS)
Q6DE02 (/ISS)
Q6NRF9 (/ISS)
Q8BGW5 (/ISS)
Q8R2Y9 (/ISS)
(6 more) |
Double-strand break repair via homologous recombination GO:0000724
The error-free repair of a double-strand break in DNA in which the broken DNA molecule is repaired using homologous sequences. A strand in the broken DNA searches for a homologous region in an intact chromosome to serve as the template for DNA synthesis. The restoration of two intact DNA molecules results in the exchange, reciprocal or nonreciprocal, of genetic material between the intact DNA molecule and the broken DNA molecule.
|
10 | A6QLK2 (/ISS) Q3SWT1 (/ISS) Q5FVP2 (/ISS) Q5PRC7 (/ISS) Q66K94 (/ISS) Q6DE02 (/ISS) Q6DE02 (/ISS) Q6NRF9 (/ISS) Q8BGW5 (/ISS) Q8R2Y9 (/ISS) |
Cellular response to DNA damage stimulus GO:0006974
Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to its DNA from environmental insults or errors during metabolism.
|
10 | A6QLK2 (/ISS) Q3SWT1 (/ISS) Q5FVP2 (/ISS) Q5PRC7 (/ISS) Q66K94 (/ISS) Q6DE02 (/ISS) Q6DE02 (/ISS) Q6NRF9 (/ISS) Q8BGW5 (/ISS) Q8R2Y9 (/ISS) |
Mitotic cell cycle checkpoint GO:0007093
A cell cycle checkpoint that ensures accurate chromosome replication and segregation by preventing progression through a mitotic cell cycle until conditions are suitable for the cell to proceed to the next stage.
|
10 | A6QLK2 (/ISS) Q3SWT1 (/ISS) Q5FVP2 (/ISS) Q5PRC7 (/ISS) Q66K94 (/ISS) Q6DE02 (/ISS) Q6DE02 (/ISS) Q6NRF9 (/ISS) Q8BGW5 (/ISS) Q8R2Y9 (/ISS) |
Response to ionizing radiation GO:0010212
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a ionizing radiation stimulus. Ionizing radiation is radiation with sufficient energy to remove electrons from atoms and may arise from spontaneous decay of unstable isotopes, resulting in alpha and beta particles and gamma rays. Ionizing radiation also includes X-rays.
|
10 | A6QLK2 (/ISS) Q3SWT1 (/ISS) Q5FVP2 (/ISS) Q5PRC7 (/ISS) Q66K94 (/ISS) Q6DE02 (/ISS) Q6DE02 (/ISS) Q6NRF9 (/ISS) Q8BGW5 (/ISS) Q8R2Y9 (/ISS) |
DNA repair GO:0006281
The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
|
7 | Q8R2Y9 (/IMP) Q96AH0 (/IMP) Q9BQ15 (/IMP) Q9BQ15 (/IMP) Q9BQ15 (/IMP) Q9BQ15 (/IMP) Q9BQ15 (/IMP) |
Double-strand break repair via homologous recombination GO:0000724
The error-free repair of a double-strand break in DNA in which the broken DNA molecule is repaired using homologous sequences. A strand in the broken DNA searches for a homologous region in an intact chromosome to serve as the template for DNA synthesis. The restoration of two intact DNA molecules results in the exchange, reciprocal or nonreciprocal, of genetic material between the intact DNA molecule and the broken DNA molecule.
|
6 | Q96AH0 (/IMP) Q9BQ15 (/IMP) Q9BQ15 (/IMP) Q9BQ15 (/IMP) Q9BQ15 (/IMP) Q9BQ15 (/IMP) |
Cellular response to DNA damage stimulus GO:0006974
Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to its DNA from environmental insults or errors during metabolism.
|
6 | Q96AH0 (/IMP) Q9BQ15 (/IMP) Q9BQ15 (/IMP) Q9BQ15 (/IMP) Q9BQ15 (/IMP) Q9BQ15 (/IMP) |
Mitotic cell cycle checkpoint GO:0007093
A cell cycle checkpoint that ensures accurate chromosome replication and segregation by preventing progression through a mitotic cell cycle until conditions are suitable for the cell to proceed to the next stage.
|
6 | Q96AH0 (/IMP) Q9BQ15 (/IMP) Q9BQ15 (/IMP) Q9BQ15 (/IMP) Q9BQ15 (/IMP) Q9BQ15 (/IMP) |
Response to ionizing radiation GO:0010212
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a ionizing radiation stimulus. Ionizing radiation is radiation with sufficient energy to remove electrons from atoms and may arise from spontaneous decay of unstable isotopes, resulting in alpha and beta particles and gamma rays. Ionizing radiation also includes X-rays.
|
6 | Q96AH0 (/IMP) Q9BQ15 (/IMP) Q9BQ15 (/IMP) Q9BQ15 (/IMP) Q9BQ15 (/IMP) Q9BQ15 (/IMP) |
SnRNA transcription by RNA polymerase II GO:0042795
The synthesis of small nuclear RNA (snRNA) from a DNA template by RNA Polymerase II (Pol II), originating at a Pol II promoter.
|
6 | Q96AH0 (/TAS) Q9BQ15 (/TAS) Q9BQ15 (/TAS) Q9BQ15 (/TAS) Q9BQ15 (/TAS) Q9BQ15 (/TAS) |
Positive regulation of telomere capping GO:1904355
Any process that activates or increases the frequency, rate or extent of telomere capping.
|
6 | Q8R2Y9 (/IMP) Q9BQ15 (/IMP) Q9BQ15 (/IMP) Q9BQ15 (/IMP) Q9BQ15 (/IMP) Q9BQ15 (/IMP) |
Establishment of protein localization to telomere GO:0070200
The directed movement of a protein to a specific location in the telomeric region of a chromosome.
|
5 | Q9BQ15 (/IMP) Q9BQ15 (/IMP) Q9BQ15 (/IMP) Q9BQ15 (/IMP) Q9BQ15 (/IMP) |
Double-strand break repair via homologous recombination GO:0000724
The error-free repair of a double-strand break in DNA in which the broken DNA molecule is repaired using homologous sequences. A strand in the broken DNA searches for a homologous region in an intact chromosome to serve as the template for DNA synthesis. The restoration of two intact DNA molecules results in the exchange, reciprocal or nonreciprocal, of genetic material between the intact DNA molecule and the broken DNA molecule.
|
2 | Q8BGW5 (/ISO) Q8R2Y9 (/ISO) |
DNA repair GO:0006281
The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
|
2 | Q8BGW5 (/ISO) Q8R2Y9 (/ISO) |
Cellular response to DNA damage stimulus GO:0006974
Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to its DNA from environmental insults or errors during metabolism.
|
2 | Q8BGW5 (/ISO) Q8R2Y9 (/ISO) |
Mitotic cell cycle checkpoint GO:0007093
A cell cycle checkpoint that ensures accurate chromosome replication and segregation by preventing progression through a mitotic cell cycle until conditions are suitable for the cell to proceed to the next stage.
|
2 | Q8BGW5 (/ISO) Q8R2Y9 (/ISO) |
Response to ionizing radiation GO:0010212
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a ionizing radiation stimulus. Ionizing radiation is radiation with sufficient energy to remove electrons from atoms and may arise from spontaneous decay of unstable isotopes, resulting in alpha and beta particles and gamma rays. Ionizing radiation also includes X-rays.
|
2 | Q8BGW5 (/ISO) Q8R2Y9 (/ISO) |
Establishment of protein localization to telomere GO:0070200
The directed movement of a protein to a specific location in the telomeric region of a chromosome.
|
1 | Q8R2Y9 (/ISO) |
Positive regulation of telomere capping GO:1904355
Any process that activates or increases the frequency, rate or extent of telomere capping.
|
1 | Q8R2Y9 (/ISO) |
There are 15 GO terms relating to "cellular component"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
|
15 |
A0A024RB89 (/IDA)
A0A024RB89 (/IDA)
A0A024RB89 (/IDA)
A0A024RB89 (/IDA)
A0A024RB89 (/IDA)
C9JMP5 (/IDA)
C9JT95 (/IDA)
C9JT95 (/IDA)
H7C0W4 (/IDA)
Q96AH0 (/IDA)
(5 more) |
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
|
15 |
A0A024RB89 (/IDA)
A0A024RB89 (/IDA)
A0A024RB89 (/IDA)
A0A024RB89 (/IDA)
A0A024RB89 (/IDA)
C9JMP5 (/IDA)
C9JT95 (/IDA)
C9JT95 (/IDA)
H7C0W4 (/IDA)
Q96AH0 (/IDA)
(5 more) |
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
11 |
A6QLK2 (/ISS)
Q3SWT1 (/ISS)
Q5FVP2 (/ISS)
Q5PRC7 (/ISS)
Q66K94 (/ISS)
Q6DE02 (/ISS)
Q6DE02 (/ISS)
Q6NRF9 (/ISS)
Q8BGW5 (/ISS)
Q8R2Y9 (/ISS)
(1 more) |
SOSS complex GO:0070876
A protein complex that functions downstream of the MRN complex to promote DNA repair and the G2/M checkpoint. The SOSS complex associates with single-stranded DNA at DNA lesions and is composed of SOSS-B (SOSS-B1/OBFC2B or SOSS-B2/OBFC2A), SOSS-A/INTS3 and SOSS-C/C9orf80.
|
10 | A6QLK2 (/ISS) Q3SWT1 (/ISS) Q5FVP2 (/ISS) Q5PRC7 (/ISS) Q66K94 (/ISS) Q6DE02 (/ISS) Q6DE02 (/ISS) Q6NRF9 (/ISS) Q8BGW5 (/ISS) Q8R2Y9 (/ISS) |
Nuclear chromosome, telomeric region GO:0000784
The terminal region of a linear nuclear chromosome that includes the telomeric DNA repeats and associated proteins.
|
7 | Q8BGW5 (/IDA) Q8R2Y9 (/IDA) Q9BQ15 (/IDA) Q9BQ15 (/IDA) Q9BQ15 (/IDA) Q9BQ15 (/IDA) Q9BQ15 (/IDA) |
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
7 | Q8BGW5 (/IDA) Q96AH0 (/IDA) Q9BQ15 (/IDA) Q9BQ15 (/IDA) Q9BQ15 (/IDA) Q9BQ15 (/IDA) Q9BQ15 (/IDA) |
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
|
6 | Q96AH0 (/TAS) Q9BQ15 (/TAS) Q9BQ15 (/TAS) Q9BQ15 (/TAS) Q9BQ15 (/TAS) Q9BQ15 (/TAS) |
SOSS complex GO:0070876
A protein complex that functions downstream of the MRN complex to promote DNA repair and the G2/M checkpoint. The SOSS complex associates with single-stranded DNA at DNA lesions and is composed of SOSS-B (SOSS-B1/OBFC2B or SOSS-B2/OBFC2A), SOSS-A/INTS3 and SOSS-C/C9orf80.
|
6 | Q96AH0 (/IDA) Q9BQ15 (/IDA) Q9BQ15 (/IDA) Q9BQ15 (/IDA) Q9BQ15 (/IDA) Q9BQ15 (/IDA) |
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
2 | Q8BGW5 (/ISO) Q8R2Y9 (/ISO) |
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
|
2 | Q8BGW5 (/ISO) Q8R2Y9 (/ISO) |
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
|
2 | Q8BGW5 (/ISO) Q8R2Y9 (/ISO) |
SOSS complex GO:0070876
A protein complex that functions downstream of the MRN complex to promote DNA repair and the G2/M checkpoint. The SOSS complex associates with single-stranded DNA at DNA lesions and is composed of SOSS-B (SOSS-B1/OBFC2B or SOSS-B2/OBFC2A), SOSS-A/INTS3 and SOSS-C/C9orf80.
|
2 | Q8BGW5 (/ISO) Q8R2Y9 (/ISO) |
Nuclear chromosome, telomeric region GO:0000784
The terminal region of a linear nuclear chromosome that includes the telomeric DNA repeats and associated proteins.
|
1 | Q8R2Y9 (/ISO) |
Nuclear chromosome, telomeric region GO:0000784
The terminal region of a linear nuclear chromosome that includes the telomeric DNA repeats and associated proteins.
|
1 | Q96AH0 (/ISS) |
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
|
1 | Q9VM17 (/ISS) |