The name of this superfamily has been modified since the most recent official CATH+ release (v4_4_0). At the point of the last release, this superfamily was named:

"
Nucleic acid-binding proteins
".

Functional Families

Overview of the Structural Clusters (SC) and Functional Families within this CATH Superfamily. Clusters with a representative structure are represented by a filled circle.
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FunFam 67: 26S protease regulatory subunit 4

Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.

There are 8 GO terms relating to "molecular function"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO TermAnnotationsEvidence
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
90 P36612 (/IPI) P62191 (/IPI) P62191 (/IPI) P62191 (/IPI) P62191 (/IPI) P62191 (/IPI) P62191 (/IPI) P62191 (/IPI) P62191 (/IPI) P62191 (/IPI)
(80 more)
RNA binding GO:0003723
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
44 P62191 (/HDA) P62191 (/HDA) P62191 (/HDA) P62191 (/HDA) P62191 (/HDA) P62191 (/HDA) P62191 (/HDA) P62191 (/HDA) P62191 (/HDA) P62191 (/HDA)
(34 more)
ATPase activity GO:0016887
Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.
44 P62191 (/ISS) P62191 (/ISS) P62191 (/ISS) P62191 (/ISS) P62191 (/ISS) P62191 (/ISS) P62191 (/ISS) P62191 (/ISS) P62191 (/ISS) P62191 (/ISS)
(34 more)
ATPase activity GO:0016887
Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.
44 P62193 (/TAS) P62193 (/TAS) P62193 (/TAS) P62193 (/TAS) P62193 (/TAS) P62193 (/TAS) P62193 (/TAS) P62193 (/TAS) P62193 (/TAS) P62193 (/TAS)
(34 more)
TBP-class protein binding GO:0017025
Interacting selectively and non-covalently with a member of the class of TATA-binding proteins (TBP), including any of the TBP-related factors (TRFs).
44 P62193 (/IPI) P62193 (/IPI) P62193 (/IPI) P62193 (/IPI) P62193 (/IPI) P62193 (/IPI) P62193 (/IPI) P62193 (/IPI) P62193 (/IPI) P62193 (/IPI)
(34 more)
TBP-class protein binding GO:0017025
Interacting selectively and non-covalently with a member of the class of TATA-binding proteins (TBP), including any of the TBP-related factors (TRFs).
44 P62192 (/ISO) P62192 (/ISO) P62192 (/ISO) P62192 (/ISO) P62192 (/ISO) P62192 (/ISO) P62192 (/ISO) P62192 (/ISO) P62192 (/ISO) P62192 (/ISO)
(34 more)
ATPase activity GO:0016887
Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.
4 P48601 (/ISM) P48601 (/ISM) P48601 (/ISM) P48601 (/ISM)
Proteasome-activating ATPase activity GO:0036402
Catalysis of the reaction: ATP + H2O = ADP + phosphate, which promotes unfolding of protein substrates, and channel opening of the core proteasome.
1 P36612 (/ISM)
Showing 1 to 8 of 8 entries

There are 32 GO terms relating to "biological process"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO TermAnnotationsEvidence
MAPK cascade GO:0000165
An intracellular protein kinase cascade containing at least a MAPK, a MAPKK and a MAP3K. The cascade can also contain an additional tiers: the upstream MAP4K. The kinases in each tier phosphorylate and activate the kinase in the downstream tier to transmit a signal within a cell.
44 P62191 (/TAS) P62191 (/TAS) P62191 (/TAS) P62191 (/TAS) P62191 (/TAS) P62191 (/TAS) P62191 (/TAS) P62191 (/TAS) P62191 (/TAS) P62191 (/TAS)
(34 more)
Protein polyubiquitination GO:0000209
Addition of multiple ubiquitin groups to a protein, forming a ubiquitin chain.
44 P62191 (/TAS) P62191 (/TAS) P62191 (/TAS) P62191 (/TAS) P62191 (/TAS) P62191 (/TAS) P62191 (/TAS) P62191 (/TAS) P62191 (/TAS) P62191 (/TAS)
(34 more)
Stimulatory C-type lectin receptor signaling pathway GO:0002223
Any series of molecular signals generated as a consequence of binding to a C-type lectin receptor capable of cellular activation.
44 P62191 (/TAS) P62191 (/TAS) P62191 (/TAS) P62191 (/TAS) P62191 (/TAS) P62191 (/TAS) P62191 (/TAS) P62191 (/TAS) P62191 (/TAS) P62191 (/TAS)
(34 more)
Antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent GO:0002479
The process in which an antigen-presenting cell expresses a peptide antigen of exogenous origin on its cell surface in association with an MHC class I protein complex following intracellular transport via a TAP (transporter associated with antigen processing) pathway. The peptide is typically a fragment of a larger exogenous protein which has been degraded within the cell and is dependent on TAP transport from the cytosol to ER for association with the MHC class I molecule. Class I here refers to classical class I molecules.
44 P62191 (/TAS) P62191 (/TAS) P62191 (/TAS) P62191 (/TAS) P62191 (/TAS) P62191 (/TAS) P62191 (/TAS) P62191 (/TAS) P62191 (/TAS) P62191 (/TAS)
(34 more)
Protein folding GO:0006457
The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure.
44 P62191 (/TAS) P62191 (/TAS) P62191 (/TAS) P62191 (/TAS) P62191 (/TAS) P62191 (/TAS) P62191 (/TAS) P62191 (/TAS) P62191 (/TAS) P62191 (/TAS)
(34 more)
Regulation of cellular amino acid metabolic process GO:0006521
Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving amino acids.
44 P62191 (/TAS) P62191 (/TAS) P62191 (/TAS) P62191 (/TAS) P62191 (/TAS) P62191 (/TAS) P62191 (/TAS) P62191 (/TAS) P62191 (/TAS) P62191 (/TAS)
(34 more)
Negative regulation of G2/M transition of mitotic cell cycle GO:0010972
Any signalling pathway that decreases or inhibits the activity of a cell cycle cyclin-dependent protein kinase to modulate the switch from G2 phase to M phase of the mitotic cell cycle.
44 P62191 (/TAS) P62191 (/TAS) P62191 (/TAS) P62191 (/TAS) P62191 (/TAS) P62191 (/TAS) P62191 (/TAS) P62191 (/TAS) P62191 (/TAS) P62191 (/TAS)
(34 more)
Protein deubiquitination GO:0016579
The removal of one or more ubiquitin groups from a protein.
44 P62191 (/TAS) P62191 (/TAS) P62191 (/TAS) P62191 (/TAS) P62191 (/TAS) P62191 (/TAS) P62191 (/TAS) P62191 (/TAS) P62191 (/TAS) P62191 (/TAS)
(34 more)
Anaphase-promoting complex-dependent catabolic process GO:0031145
The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, with ubiquitin-protein ligation catalyzed by the anaphase-promoting complex, and mediated by the proteasome.
44 P62191 (/TAS) P62191 (/TAS) P62191 (/TAS) P62191 (/TAS) P62191 (/TAS) P62191 (/TAS) P62191 (/TAS) P62191 (/TAS) P62191 (/TAS) P62191 (/TAS)
(34 more)
SCF-dependent proteasomal ubiquitin-dependent protein catabolic process GO:0031146
The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, with ubiquitin-protein ligation catalyzed by an SCF (Skp1/Cul1/F-box protein) complex, and mediated by the proteasome.
44 P62191 (/TAS) P62191 (/TAS) P62191 (/TAS) P62191 (/TAS) P62191 (/TAS) P62191 (/TAS) P62191 (/TAS) P62191 (/TAS) P62191 (/TAS) P62191 (/TAS)
(34 more)
Showing 1 to 10 of 32 entries

There are 21 GO terms relating to "cellular component"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO TermAnnotationsEvidence
Proteasome accessory complex GO:0022624
A protein complex, that caps one or both ends of the proteasome core complex and regulates entry into, or exit from, the proteasome core complex.
89 P62191 (/ISS) P62191 (/ISS) P62191 (/ISS) P62191 (/ISS) P62191 (/ISS) P62191 (/ISS) P62191 (/ISS) P62191 (/ISS) P62191 (/ISS) P62191 (/ISS)
(79 more)
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
88 P62191 (/IDA) P62191 (/IDA) P62191 (/IDA) P62191 (/IDA) P62191 (/IDA) P62191 (/IDA) P62191 (/IDA) P62191 (/IDA) P62191 (/IDA) P62191 (/IDA)
(78 more)
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
88 P62191 (/IDA) P62191 (/IDA) P62191 (/IDA) P62191 (/IDA) P62191 (/IDA) P62191 (/IDA) P62191 (/IDA) P62191 (/IDA) P62191 (/IDA) P62191 (/IDA)
(78 more)
Proteasome regulatory particle GO:0005838
A multisubunit complex, which caps one or both ends of the proteasome core complex. This complex recognizes and unfolds ubiquitinated proteins, and translocates them to the proteasome core complex.
49 P36612 (/IDA) P48601 (/IDA) P48601 (/IDA) P48601 (/IDA) P48601 (/IDA) P62192 (/IDA) P62192 (/IDA) P62192 (/IDA) P62192 (/IDA) P62192 (/IDA)
(39 more)
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
48 P48601 (/TAS) P48601 (/TAS) P48601 (/TAS) P48601 (/TAS) P62191 (/TAS) P62191 (/TAS) P62191 (/TAS) P62191 (/TAS) P62191 (/TAS) P62191 (/TAS)
(38 more)
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
48 P48601 (/TAS) P48601 (/TAS) P48601 (/TAS) P48601 (/TAS) P62191 (/TAS) P62191 (/TAS) P62191 (/TAS) P62191 (/TAS) P62191 (/TAS) P62191 (/TAS)
(38 more)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
45 P36612 (/HDA) P62191 (/HDA) P62191 (/HDA) P62191 (/HDA) P62191 (/HDA) P62191 (/HDA) P62191 (/HDA) P62191 (/HDA) P62191 (/HDA) P62191 (/HDA)
(35 more)
Proteasome complex GO:0000502
A large multisubunit complex which catalyzes protein degradation, found in eukaryotes, archaea and some bacteria. In eukaryotes, this complex consists of the barrel shaped proteasome core complex and one or two associated proteins or complexes that act in regulating entry into or exit from the core.
44 P62191 (/IDA) P62191 (/IDA) P62191 (/IDA) P62191 (/IDA) P62191 (/IDA) P62191 (/IDA) P62191 (/IDA) P62191 (/IDA) P62191 (/IDA) P62191 (/IDA)
(34 more)
Proteasome complex GO:0000502
A large multisubunit complex which catalyzes protein degradation, found in eukaryotes, archaea and some bacteria. In eukaryotes, this complex consists of the barrel shaped proteasome core complex and one or two associated proteins or complexes that act in regulating entry into or exit from the core.
44 P62192 (/ISO) P62192 (/ISO) P62192 (/ISO) P62192 (/ISO) P62192 (/ISO) P62192 (/ISO) P62192 (/ISO) P62192 (/ISO) P62192 (/ISO) P62192 (/ISO)
(34 more)
Proteasome complex GO:0000502
A large multisubunit complex which catalyzes protein degradation, found in eukaryotes, archaea and some bacteria. In eukaryotes, this complex consists of the barrel shaped proteasome core complex and one or two associated proteins or complexes that act in regulating entry into or exit from the core.
44 P62191 (/NAS) P62191 (/NAS) P62191 (/NAS) P62191 (/NAS) P62191 (/NAS) P62191 (/NAS) P62191 (/NAS) P62191 (/NAS) P62191 (/NAS) P62191 (/NAS)
(34 more)
Showing 1 to 10 of 21 entries
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