The name of this superfamily has been modified since the most recent official CATH+ release (v4_4_0). At the point of the last release, this superfamily was named:
"Hypothetical Protein Pfu-838710-001
".
FunFam 4: Mediator of RNA polymerase II transcription subuni...
Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.
There are 2 GO terms relating to "molecular function"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Transcription coregulator activity GO:0003712
A protein or a member of a complex that interacts specifically and non-covalently with a DNA-bound DNA-binding transcription factor to either activate or repress the transcription of specific genes. Coregulators often act by altering chromatin structure and modifications. For example, one class of transcription coregulators modifies chromatin structure through covalent modification of histones. A second ATP-dependent class modifies the conformation of chromatin. A third class modulates interactions of DNA-binding transcription factor with other transcription coregulators.
|
2 | Q9SJZ6 (/IMP) Q9SJZ6 (/IMP) |
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
|
2 | Q9SJZ6 (/IPI) Q9SJZ6 (/IPI) |
There are 19 GO terms relating to "biological process"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Regulation of transcription, DNA-templated GO:0006355
Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
|
2 | Q9SJZ6 (/IMP) Q9SJZ6 (/IMP) |
Response to ethylene GO:0009723
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ethylene (ethene) stimulus.
|
2 | Q9SJZ6 (/IMP) Q9SJZ6 (/IMP) |
Response to abscisic acid GO:0009737
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an abscisic acid stimulus.
|
2 | Q9SJZ6 (/IMP) Q9SJZ6 (/IMP) |
Regulation of vernalization response GO:0010219
Any process that modulates the frequency, rate or extent of the vernalization response, by which induction of flowering is normally caused by extended exposure to cold temperatures.
|
2 | Q9SJZ6 (/IMP) Q9SJZ6 (/IMP) |
Regulation of DNA-templated transcription, termination GO:0031554
Any process that modulates the frequency, rate, extent, or location of DNA-templated transcription termination, the process in which transcription is completed; the formation of phosphodiester bonds ceases, the RNA-DNA hybrid dissociates, and RNA polymerase releases the DNA.
|
2 | Q9SJZ6 (/IDA) Q9SJZ6 (/IDA) |
Regulation of DNA-templated transcription, elongation GO:0032784
Any process that modulates the frequency, rate or extent of transcription elongation, the extension of an RNA molecule after transcription initiation and promoter clearance by the addition of ribonucleotides catalyzed by a DNA-dependent RNA polymerase.
|
2 | Q9SJZ6 (/IDA) Q9SJZ6 (/IDA) |
Production of miRNAs involved in gene silencing by miRNA GO:0035196
Cleavage of stem-loop RNA precursors into microRNAs (miRNAs), a class of small RNAs that primarily silence genes by blocking the translation of mRNA transcripts into protein, or by increasing the degradation of non-protein-coding RNA transcripts.
|
2 | Q9SJZ6 (/IMP) Q9SJZ6 (/IMP) |
Negative regulation of transcription, DNA-templated GO:0045892
Any process that stops, prevents, or reduces the frequency, rate or extent of cellular DNA-templated transcription.
|
2 | Q9SJZ6 (/IMP) Q9SJZ6 (/IMP) |
Carpel development GO:0048440
The process whose specific outcome is the progression of the carpel over time, from its formation to the mature structure. A carpel is an organ (generally believed to be a modified foliar unit) at the centre of a flower, bearing one or more ovules and having its margins fused together or with other carpels to enclose the ovule in an ovary, and consisting also of a stigma and usually a style.
|
2 | Q9SJZ6 (/IGI) Q9SJZ6 (/IGI) |
Petal development GO:0048441
The process whose specific outcome is the progression of the petal over time, from its formation to the mature structure.
|
2 | Q9SJZ6 (/IGI) Q9SJZ6 (/IGI) |
Sepal development GO:0048442
The process whose specific outcome is the progression of the sepal over time, from its formation to the mature structure.
|
2 | Q9SJZ6 (/IGI) Q9SJZ6 (/IGI) |
Stamen development GO:0048443
The process whose specific outcome is the progression of the stamen over time, from its formation to the mature structure.
|
2 | Q9SJZ6 (/IGI) Q9SJZ6 (/IGI) |
Regulation of timing of transition from vegetative to reproductive phase GO:0048510
The process controlling the point in time during development when a vegetative meristem will change its identity to become an inflorescence or floral meristem, and/or the rate at which the change occurs.
|
2 | Q9SJZ6 (/IMP) Q9SJZ6 (/IMP) |
Specification of floral organ number GO:0048833
Any process that modulates the number of floral organs formed in a floral whorl.
|
2 | Q9SJZ6 (/IMP) Q9SJZ6 (/IMP) |
Regulation of defense response to fungus GO:1900150
Any process that modulates the frequency, rate or extent of defense response to fungus.
|
2 | Q9SJZ6 (/IMP) Q9SJZ6 (/IMP) |
Regulation of photoperiodism, flowering GO:2000028
Any process that modulates the frequency, rate or extent of photoperiodism, flowering.
|
2 | Q9SJZ6 (/IMP) Q9SJZ6 (/IMP) |
Regulation of salicylic acid mediated signaling pathway GO:2000031
Any process that modulates the frequency, rate or extent of salicylic acid mediated signaling pathway.
|
2 | Q9SJZ6 (/IMP) Q9SJZ6 (/IMP) |
Regulation of DNA-templated transcription, initiation GO:2000142
Any process that modulates the frequency, rate or extent of DNA-templated transcription initiation.
|
2 | Q9SJZ6 (/IDA) Q9SJZ6 (/IDA) |
Regulation of histone H3-K36 trimethylation GO:2001253
Any process that modulates the frequency, rate or extent of histone H3-K36 trimethylation.
|
2 | Q9SJZ6 (/IMP) Q9SJZ6 (/IMP) |
There are 2 GO terms relating to "cellular component"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
2 | Q9SJZ6 (/IDA) Q9SJZ6 (/IDA) |
Mediator complex GO:0016592
A protein complex that interacts with the carboxy-terminal domain of the largest subunit of RNA polymerase II and plays an active role in transducing the signal from a transcription factor to the transcriptional machinery. The mediator complex is required for activation of transcription of most protein-coding genes, but can also act as a transcriptional corepressor. The Saccharomyces complex contains several identifiable subcomplexes: a head domain comprising Srb2, -4, and -5, Med6, -8, and -11, and Rox3 proteins; a middle domain comprising Med1, -4, and -7, Nut1 and -2, Cse2, Rgr1, Soh1, and Srb7 proteins; a tail consisting of Gal11p, Med2p, Pgd1p, and Sin4p; and a regulatory subcomplex comprising Ssn2, -3, and -8, and Srb8 proteins. Metazoan mediator complexes have similar modular structures and include homologs of yeast Srb and Med proteins.
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2 | Q9SJZ6 (/IDA) Q9SJZ6 (/IDA) |