The name of this superfamily has been modified since the most recent official CATH+ release (v4_4_0). At the point of the last release, this superfamily was: waiting to be named.

Functional Families

Overview of the Structural Clusters (SC) and Functional Families within this CATH Superfamily. Clusters with a representative structure are represented by a filled circle.
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FunFam 1: Regulator of nonsense transcripts 1

Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.

There are 15 GO terms relating to "molecular function"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO TermAnnotationsEvidence
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
10 Q92900 (/IPI) Q92900 (/IPI) Q92900 (/IPI) Q92900 (/IPI) Q92900 (/IPI) Q92900 (/IPI) Q92900 (/IPI) Q92900 (/IPI) Q92900 (/IPI) Q9EPU0 (/IPI)
Chromatin binding GO:0003682
Interacting selectively and non-covalently with chromatin, the network of fibers of DNA, protein, and sometimes RNA, that make up the chromosomes of the eukaryotic nucleus during interphase.
9 Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA)
RNA binding GO:0003723
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
9 Q92900 (/HDA) Q92900 (/HDA) Q92900 (/HDA) Q92900 (/HDA) Q92900 (/HDA) Q92900 (/HDA) Q92900 (/HDA) Q92900 (/HDA) Q92900 (/HDA)
RNA binding GO:0003723
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
9 Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA)
RNA binding GO:0003723
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
9 Q92900 (/NAS) Q92900 (/NAS) Q92900 (/NAS) Q92900 (/NAS) Q92900 (/NAS) Q92900 (/NAS) Q92900 (/NAS) Q92900 (/NAS) Q92900 (/NAS)
RNA helicase activity GO:0003724
Catalysis of the reaction: ATP + H2O = ADP + phosphate; this reaction drives the unwinding of an RNA helix.
9 Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA)
Helicase activity GO:0004386
Catalysis of the reaction: ATP + H2O = ADP + phosphate, to drive the unwinding of a DNA or RNA helix.
9 Q92900 (/NAS) Q92900 (/NAS) Q92900 (/NAS) Q92900 (/NAS) Q92900 (/NAS) Q92900 (/NAS) Q92900 (/NAS) Q92900 (/NAS) Q92900 (/NAS)
Telomeric DNA binding GO:0042162
Interacting selectively and non-covalently with a telomere, a specific structure at the end of a linear chromosome required for the integrity and maintenance of the end.
9 Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA)
Chromatin binding GO:0003682
Interacting selectively and non-covalently with chromatin, the network of fibers of DNA, protein, and sometimes RNA, that make up the chromosomes of the eukaryotic nucleus during interphase.
1 Q9EPU0 (/ISO)
Chromatin binding GO:0003682
Interacting selectively and non-covalently with chromatin, the network of fibers of DNA, protein, and sometimes RNA, that make up the chromosomes of the eukaryotic nucleus during interphase.
1 Q9EPU0 (/ISS)
Showing 1 to 10 of 15 entries

There are 50 GO terms relating to "biological process"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO TermAnnotationsEvidence
Nuclear-transcribed mRNA catabolic process, nonsense-mediated decay GO:0000184
The nonsense-mediated decay pathway for nuclear-transcribed mRNAs degrades mRNAs in which an amino-acid codon has changed to a nonsense codon; this prevents the translation of such mRNAs into truncated, and potentially harmful, proteins.
13 F1RCY6 (/IMP) Q7ZVZ4 (/IMP) Q92900 (/IMP) Q92900 (/IMP) Q92900 (/IMP) Q92900 (/IMP) Q92900 (/IMP) Q92900 (/IMP) Q92900 (/IMP) Q92900 (/IMP)
(3 more)
Nuclear-transcribed mRNA catabolic process GO:0000956
The chemical reactions and pathways resulting in the breakdown of nuclear-transcribed mRNAs in eukaryotic cells.
10 F1RCY6 (/IMP) Q92900 (/IMP) Q92900 (/IMP) Q92900 (/IMP) Q92900 (/IMP) Q92900 (/IMP) Q92900 (/IMP) Q92900 (/IMP) Q92900 (/IMP) Q92900 (/IMP)
Nuclear-transcribed mRNA catabolic process, nonsense-mediated decay GO:0000184
The nonsense-mediated decay pathway for nuclear-transcribed mRNAs degrades mRNAs in which an amino-acid codon has changed to a nonsense codon; this prevents the translation of such mRNAs into truncated, and potentially harmful, proteins.
9 Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA)
Nuclear-transcribed mRNA catabolic process, nonsense-mediated decay GO:0000184
The nonsense-mediated decay pathway for nuclear-transcribed mRNAs degrades mRNAs in which an amino-acid codon has changed to a nonsense codon; this prevents the translation of such mRNAs into truncated, and potentially harmful, proteins.
9 Q92900 (/NAS) Q92900 (/NAS) Q92900 (/NAS) Q92900 (/NAS) Q92900 (/NAS) Q92900 (/NAS) Q92900 (/NAS) Q92900 (/NAS) Q92900 (/NAS)
Nuclear-transcribed mRNA catabolic process, nonsense-mediated decay GO:0000184
The nonsense-mediated decay pathway for nuclear-transcribed mRNAs degrades mRNAs in which an amino-acid codon has changed to a nonsense codon; this prevents the translation of such mRNAs into truncated, and potentially harmful, proteins.
9 Q92900 (/TAS) Q92900 (/TAS) Q92900 (/TAS) Q92900 (/TAS) Q92900 (/TAS) Q92900 (/TAS) Q92900 (/TAS) Q92900 (/TAS) Q92900 (/TAS)
Nuclear-transcribed mRNA catabolic process, endonucleolytic cleavage-dependent decay GO:0000294
A minor degradation pathway nuclear-transcribed mRNAs that begins with an endonucleolytic cleavage to generate unprotected ends.
9 Q92900 (/IMP) Q92900 (/IMP) Q92900 (/IMP) Q92900 (/IMP) Q92900 (/IMP) Q92900 (/IMP) Q92900 (/IMP) Q92900 (/IMP) Q92900 (/IMP)
DNA replication GO:0006260
The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA.
9 Q92900 (/IMP) Q92900 (/IMP) Q92900 (/IMP) Q92900 (/IMP) Q92900 (/IMP) Q92900 (/IMP) Q92900 (/IMP) Q92900 (/IMP) Q92900 (/IMP)
DNA repair GO:0006281
The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
9 Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA)
MRNA export from nucleus GO:0006406
The directed movement of mRNA from the nucleus to the cytoplasm.
9 Q92900 (/TAS) Q92900 (/TAS) Q92900 (/TAS) Q92900 (/TAS) Q92900 (/TAS) Q92900 (/TAS) Q92900 (/TAS) Q92900 (/TAS) Q92900 (/TAS)
Regulation of translational termination GO:0006449
Any process that modulates the frequency, rate or extent of translational termination.
9 Q92900 (/IMP) Q92900 (/IMP) Q92900 (/IMP) Q92900 (/IMP) Q92900 (/IMP) Q92900 (/IMP) Q92900 (/IMP) Q92900 (/IMP) Q92900 (/IMP)
Showing 1 to 10 of 50 entries

There are 17 GO terms relating to "cellular component"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO TermAnnotationsEvidence
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
24 A0A024R7L5 (/IDA) A0A024R7L5 (/IDA) A0A024R7L5 (/IDA) A0A024R7L5 (/IDA) A0A024R7L5 (/IDA) A0A024R7L5 (/IDA) A0A024R7L8 (/IDA) A0A024R7L8 (/IDA) A0A024R7L8 (/IDA) A0A024R7L8 (/IDA)
(14 more)
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
10 Q92900 (/TAS) Q92900 (/TAS) Q92900 (/TAS) Q92900 (/TAS) Q92900 (/TAS) Q92900 (/TAS) Q92900 (/TAS) Q92900 (/TAS) Q92900 (/TAS) Q9EPU0 (/TAS)
Nuclear chromosome, telomeric region GO:0000784
The terminal region of a linear nuclear chromosome that includes the telomeric DNA repeats and associated proteins.
9 Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA)
Chromatin GO:0000785
The ordered and organized complex of DNA, protein, and sometimes RNA, that forms the chromosome.
9 Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
9 Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA)
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
9 Q92900 (/NAS) Q92900 (/NAS) Q92900 (/NAS) Q92900 (/NAS) Q92900 (/NAS) Q92900 (/NAS) Q92900 (/NAS) Q92900 (/NAS) Q92900 (/NAS)
Exon-exon junction complex GO:0035145
A multi-subunit complex deposited by the spliceosome upstream of messenger RNA exon-exon junctions. The exon-exon junction complex provides a binding platform for factors involved in mRNA export and nonsense-mediated mRNA decay.
9 Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA)
Supraspliceosomal complex GO:0044530
Multicomponent complex of RNA and proteins that is composed of four active spliceosomes, termed native spliceosomes, connected to each other by the pre-mRNA. The supraspliceosome is the nuclear machine where the pre-mRNA processing takes place, like the 5'-end capping, 3'-end cleavage, splicing and editing.
9 Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA) Q92900 (/IDA)
Neuronal ribonucleoprotein granule GO:0071598
A ribonucleoprotein complex that is found in the cytoplasm of axons and dendrites, and transports translationally silenced mRNAs to dendritic synapses, where they are released and translated in response to specific exogenous stimuli.
2 Q9VYS3 (/IDA) Q9VYS3 (/IDA)
Messenger ribonucleoprotein complex GO:1990124
A ribonucleoprotein complex containing both protein and messenger RNA (mRNA) molecules.
2 Q9VYS3 (/IDA) Q9VYS3 (/IDA)
Showing 1 to 10 of 17 entries
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